Wall clock time and date at job start Tue Mar 31 2020 03:15:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42908 * 113.99515 * 2 1 4 4 C 1.53006 * 109.46680 * 180.02562 * 3 2 1 5 5 N 1.46495 * 109.47132 * 64.99802 * 4 3 2 6 6 C 1.46499 * 120.00408 * 274.57834 * 5 4 3 7 7 C 1.50704 * 109.47062 * 263.55010 * 6 5 4 8 8 H 1.07995 * 119.99873 * 359.97438 * 7 6 5 9 9 C 1.37871 * 119.99758 * 179.97438 * 7 6 5 10 10 N 1.31514 * 119.99990 * 179.97438 * 9 7 6 11 11 Si 1.86805 * 120.00301 * 359.97438 * 9 7 6 12 12 H 1.48502 * 109.46813 * 90.00040 * 11 9 7 13 13 H 1.48498 * 109.47165 * 209.99795 * 11 9 7 14 14 H 1.48500 * 109.47179 * 330.00336 * 11 9 7 15 15 C 1.34779 * 119.99988 * 94.58105 * 5 4 3 16 16 O 1.21576 * 120.00204 * 4.36124 * 15 5 4 17 17 C 1.47713 * 120.00154 * 184.36423 * 15 5 4 18 18 N 1.31846 * 126.57130 * 354.30679 * 17 15 5 19 19 N 1.28457 * 110.05944 * 180.02562 * 18 17 15 20 20 H 0.96998 * 124.88193 * 179.97438 * 19 18 17 21 21 C 1.35251 * 110.23306 * 359.97438 * 19 18 17 22 22 C 1.35054 * 107.07384 * 0.02562 * 21 19 18 23 23 C 1.50945 * 110.52393 * 179.97438 * 22 21 19 24 24 C 1.54515 * 105.05766 * 343.17612 * 23 22 21 25 25 C 1.51231 * 142.76872 * 180.02562 * 21 19 18 26 26 H 1.09004 * 109.46634 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.46840 * 299.99940 * 1 2 3 28 28 H 1.08999 * 109.47608 * 59.99693 * 1 2 3 29 29 H 1.08995 * 109.47301 * 60.00012 * 3 2 1 30 30 H 1.09004 * 109.46932 * 299.99592 * 3 2 1 31 31 H 1.08994 * 109.47159 * 304.99409 * 4 3 2 32 32 H 1.09007 * 109.46856 * 184.99668 * 4 3 2 33 33 H 1.09008 * 109.46469 * 23.54445 * 6 5 4 34 34 H 1.08998 * 109.47498 * 143.54715 * 6 5 4 35 35 H 0.97005 * 120.00281 * 180.02562 * 10 9 7 36 36 H 1.08999 * 110.34463 * 102.09994 * 23 22 21 37 37 H 1.09005 * 110.33979 * 224.25710 * 23 22 21 38 38 H 1.09001 * 110.93073 * 143.71161 * 24 23 22 39 39 H 1.09007 * 110.92981 * 267.36961 * 24 23 22 40 40 H 1.09006 * 110.32672 * 315.69742 * 25 21 19 41 41 H 1.08990 * 110.32873 * 77.81359 * 25 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9756 0.5645 -1.2527 6 6 4.0092 -0.8950 -1.3750 7 6 5.4045 -1.3906 -1.0946 8 1 6.1879 -0.6887 -0.8501 9 6 5.6807 -2.7403 -1.1501 10 7 6.8984 -3.1728 -0.9058 11 14 4.3254 -3.9545 -1.5723 12 1 4.2816 -4.1558 -3.0429 13 1 4.5971 -5.2520 -0.9030 14 1 3.0201 -3.4210 -1.1067 15 6 4.3498 1.3366 -2.2921 16 8 4.3981 2.5448 -2.1655 17 6 4.7013 0.7149 -3.5851 18 7 4.7953 -0.5760 -3.8363 19 7 5.1209 -0.7633 -5.0647 20 1 5.2486 -1.6311 -5.4787 21 6 5.2600 0.4238 -5.6980 22 6 5.0015 1.3900 -4.7904 23 6 5.1360 2.7558 -5.4188 24 6 5.9290 2.5209 -6.7240 25 6 5.5959 1.0424 -7.0365 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.6885 1.8465 0.8899 30 1 1.6885 1.8464 -0.8901 31 1 3.8514 0.5685 0.8409 32 1 3.9785 2.1767 0.0889 33 1 3.3161 -1.3356 -0.6582 34 1 3.7180 -1.1817 -2.3855 35 1 7.0929 -4.1224 -0.9453 36 1 4.1523 3.1687 -5.6422 37 1 5.6857 3.4250 -4.7567 38 1 5.5748 3.1779 -7.5183 39 1 6.9984 2.6531 -6.5590 40 1 6.4600 0.5452 -7.4772 41 1 4.7400 0.9790 -7.7083 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103215613.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:15:10 Heat of formation + Delta-G solvation = 18.717742 kcal Electronic energy + Delta-G solvation = -24533.126151 eV Core-core repulsion = 21029.930031 eV Total energy + Delta-G solvation = -3503.196120 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.33992 -38.90027 -37.37103 -36.54648 -34.83163 -32.39011 -31.56355 -29.78772 -28.34531 -27.47908 -27.28102 -26.01684 -23.89368 -22.36430 -21.71499 -21.18855 -19.53214 -18.14797 -17.16871 -16.87065 -16.42026 -15.86904 -15.85162 -15.53332 -15.05766 -14.62539 -14.38308 -13.99708 -13.58895 -13.18752 -12.97990 -12.74417 -12.64106 -12.44881 -11.99310 -11.79665 -11.66019 -11.58790 -11.40162 -11.04770 -11.01600 -10.88672 -10.69617 -10.53476 -10.07318 -9.72967 -9.47692 -9.37417 -9.18618 -8.75518 -8.44855 -8.18093 -7.58606 -5.97637 -3.92447 2.29980 2.52593 3.14788 3.32095 3.39301 3.46482 3.87239 4.07694 4.20218 4.49517 4.58146 4.77404 5.04447 5.10135 5.34269 5.37240 5.37588 5.42927 5.50102 5.61317 5.63939 5.65092 5.67988 5.78947 5.80291 5.93211 5.96702 6.15052 6.22220 6.30720 6.37498 6.48542 6.79518 6.85043 7.18638 7.42546 7.48592 7.66391 7.74870 8.27934 8.47502 8.64716 9.01807 9.08732 9.64812 11.16133 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.011619 B = 0.007199 C = 0.005201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2409.352118 B = 3888.461911 C = 5381.772846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.378 6.378 3 C 0.048 3.952 4 C 0.119 3.881 5 N -0.573 5.573 6 C 0.203 3.797 7 C -0.508 4.508 8 H 0.070 0.930 9 C 0.076 3.924 10 N -0.905 5.905 11 Si 0.871 3.129 12 H -0.279 1.279 13 H -0.290 1.290 14 H -0.262 1.262 15 C 0.602 3.398 16 O -0.568 6.568 17 C 0.012 3.988 18 N -0.187 5.187 19 N -0.373 5.373 20 H 0.439 0.561 21 C -0.042 4.042 22 C -0.168 4.168 23 C -0.042 4.042 24 C -0.115 4.115 25 C -0.032 4.032 26 H 0.081 0.919 27 H 0.036 0.964 28 H 0.035 0.965 29 H 0.053 0.947 30 H 0.048 0.952 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.043 0.957 34 H 0.056 0.944 35 H 0.261 0.739 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.338 7.892 -9.270 14.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.297 6.297 3 C -0.030 4.030 4 C -0.005 4.005 5 N -0.302 5.302 6 C 0.081 3.919 7 C -0.546 4.546 8 H 0.088 0.912 9 C -0.125 4.125 10 N -0.545 5.545 11 Si 0.699 3.301 12 H -0.205 1.205 13 H -0.217 1.217 14 H -0.186 1.186 15 C 0.389 3.611 16 O -0.447 6.447 17 C -0.148 4.148 18 N -0.022 5.022 19 N -0.085 5.085 20 H 0.282 0.718 21 C -0.168 4.168 22 C -0.178 4.178 23 C -0.081 4.081 24 C -0.153 4.153 25 C -0.072 4.072 26 H 0.100 0.900 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.107 0.893 32 H 0.113 0.887 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.224 7.149 -8.625 13.898 hybrid contribution -0.580 -0.634 -0.672 1.091 sum -8.805 6.515 -9.297 14.367 Atomic orbital electron populations 1.22687 0.82173 1.02319 0.99305 1.88046 1.18699 1.27685 1.95233 1.23066 0.95201 0.84827 0.99911 1.21423 0.90987 1.00176 0.87877 1.47754 1.62052 1.09159 1.11199 1.20216 0.98211 0.74507 0.98934 1.21285 0.94070 0.92967 1.46323 0.91164 1.24717 0.95004 0.97904 0.94852 1.69918 1.19400 1.14520 1.50618 0.86923 0.83653 0.80866 0.78687 1.20462 1.21660 1.18629 1.16964 0.76574 0.85408 0.82172 1.90662 1.56534 1.13855 1.83655 1.21236 1.09704 0.89063 0.94811 1.74550 1.14521 1.17946 0.95165 1.43060 1.50765 1.07736 1.06919 0.71817 1.22074 1.09191 0.86641 0.98852 1.20754 1.08035 0.96687 0.92351 1.20308 1.00252 0.92806 0.94712 1.22469 1.00901 0.94457 0.97494 1.20566 1.01377 0.94872 0.90340 0.90015 0.94550 0.94591 0.92864 0.93358 0.89330 0.88691 0.93949 0.92708 0.92960 0.90880 0.90510 0.90282 0.90690 0.90901 0.90196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 101.05 1.11 1.53 16 2 O -0.38 -6.70 9.22 -35.23 -0.32 -7.02 16 3 C 0.05 0.78 6.28 37.16 0.23 1.01 16 4 C 0.12 2.26 5.91 -4.04 -0.02 2.24 16 5 N -0.57 -12.99 2.46 -176.22 -0.43 -13.43 16 6 C 0.20 5.01 3.58 -5.19 -0.02 4.99 16 7 C -0.51 -14.43 9.04 -34.44 -0.31 -14.74 16 8 H 0.07 2.25 8.06 -52.49 -0.42 1.82 16 9 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 10 N -0.90 -27.77 13.96 55.43 0.77 -27.00 16 11 Si 0.87 21.57 27.47 -169.99 -4.67 16.91 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 14 H -0.26 -6.31 6.54 56.52 0.37 -5.94 16 15 C 0.60 13.94 7.62 -12.39 -0.09 13.84 16 16 O -0.57 -13.38 16.42 5.30 0.09 -13.29 16 17 C 0.01 0.27 6.81 -82.80 -0.56 -0.30 16 18 N -0.19 -4.10 8.10 33.40 0.27 -3.83 16 19 N -0.37 -6.50 6.84 33.61 0.23 -6.27 16 20 H 0.44 6.17 8.96 -190.45 -1.71 4.46 16 21 C -0.04 -0.66 8.12 -81.96 -0.67 -1.33 16 22 C -0.17 -3.08 6.83 -104.44 -0.71 -3.80 16 23 C -0.04 -0.61 6.77 -26.97 -0.18 -0.79 16 24 C -0.12 -1.20 7.15 -25.01 -0.18 -1.38 16 25 C -0.03 -0.35 6.79 -26.70 -0.18 -0.53 16 26 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.04 0.40 8.14 -51.92 -0.42 -0.02 16 28 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.09 1.69 8.11 -51.93 -0.42 1.27 16 32 H 0.09 1.72 7.24 -51.92 -0.38 1.34 16 33 H 0.04 1.07 5.90 -51.92 -0.31 0.76 16 34 H 0.06 1.38 4.75 -51.93 -0.25 1.13 16 35 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 36 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 337.48 15.07 5.09 5.09 Total: -1.00 -35.46 337.48 -7.96 -43.42 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -7.30 Total: 2.58 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: -1.68 Total: 2.85 kcal Atomic # 7 Polarization: -51.36 SS G_CDS: 0.84 Total: -50.52 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: -0.24 Total: -20.31 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.67 Total: 16.91 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -35.46 -7.96 -43.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103215613.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.137 kcal (2) G-P(sol) polarization free energy of solvation -35.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds