Wall clock time and date at job start Tue Mar 31 2020 03:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42908 * 113.99515 * 2 1 4 4 C 1.53006 * 109.46680 * 180.02562 * 3 2 1 5 5 N 1.46495 * 109.47132 * 64.99802 * 4 3 2 6 6 C 1.46499 * 120.00408 * 274.57834 * 5 4 3 7 7 C 1.50704 * 109.47062 * 263.55010 * 6 5 4 8 8 H 1.07995 * 119.99873 * 359.97438 * 7 6 5 9 9 C 1.37871 * 119.99758 * 179.97438 * 7 6 5 10 10 N 1.31514 * 119.99990 * 179.97438 * 9 7 6 11 11 Si 1.86805 * 120.00301 * 359.97438 * 9 7 6 12 12 H 1.48502 * 109.46813 * 90.00040 * 11 9 7 13 13 H 1.48498 * 109.47165 * 209.99795 * 11 9 7 14 14 H 1.48500 * 109.47179 * 330.00336 * 11 9 7 15 15 C 1.34779 * 119.99988 * 94.58105 * 5 4 3 16 16 O 1.21576 * 120.00204 * 4.36124 * 15 5 4 17 17 C 1.47713 * 120.00154 * 184.36423 * 15 5 4 18 18 N 1.31846 * 126.57130 * 354.30679 * 17 15 5 19 19 N 1.28457 * 110.05944 * 180.02562 * 18 17 15 20 20 H 0.96998 * 124.88193 * 179.97438 * 19 18 17 21 21 C 1.35251 * 110.23306 * 359.97438 * 19 18 17 22 22 C 1.35054 * 107.07384 * 0.02562 * 21 19 18 23 23 C 1.50945 * 110.52393 * 179.97438 * 22 21 19 24 24 C 1.54515 * 105.05766 * 343.17612 * 23 22 21 25 25 C 1.51231 * 142.76872 * 180.02562 * 21 19 18 26 26 H 1.09004 * 109.46634 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.46840 * 299.99940 * 1 2 3 28 28 H 1.08999 * 109.47608 * 59.99693 * 1 2 3 29 29 H 1.08995 * 109.47301 * 60.00012 * 3 2 1 30 30 H 1.09004 * 109.46932 * 299.99592 * 3 2 1 31 31 H 1.08994 * 109.47159 * 304.99409 * 4 3 2 32 32 H 1.09007 * 109.46856 * 184.99668 * 4 3 2 33 33 H 1.09008 * 109.46469 * 23.54445 * 6 5 4 34 34 H 1.08998 * 109.47498 * 143.54715 * 6 5 4 35 35 H 0.97005 * 120.00281 * 180.02562 * 10 9 7 36 36 H 1.08999 * 110.34463 * 102.09994 * 23 22 21 37 37 H 1.09005 * 110.33979 * 224.25710 * 23 22 21 38 38 H 1.09001 * 110.93073 * 143.71161 * 24 23 22 39 39 H 1.09007 * 110.92981 * 267.36961 * 24 23 22 40 40 H 1.09006 * 110.32672 * 315.69742 * 25 21 19 41 41 H 1.08990 * 110.32873 * 77.81359 * 25 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9756 0.5645 -1.2527 6 6 4.0092 -0.8950 -1.3750 7 6 5.4045 -1.3906 -1.0946 8 1 6.1879 -0.6887 -0.8501 9 6 5.6807 -2.7403 -1.1501 10 7 6.8984 -3.1728 -0.9058 11 14 4.3254 -3.9545 -1.5723 12 1 4.2816 -4.1558 -3.0429 13 1 4.5971 -5.2520 -0.9030 14 1 3.0201 -3.4210 -1.1067 15 6 4.3498 1.3366 -2.2921 16 8 4.3981 2.5448 -2.1655 17 6 4.7013 0.7149 -3.5851 18 7 4.7953 -0.5760 -3.8363 19 7 5.1209 -0.7633 -5.0647 20 1 5.2486 -1.6311 -5.4787 21 6 5.2600 0.4238 -5.6980 22 6 5.0015 1.3900 -4.7904 23 6 5.1360 2.7558 -5.4188 24 6 5.9290 2.5209 -6.7240 25 6 5.5959 1.0424 -7.0365 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.6885 1.8465 0.8899 30 1 1.6885 1.8464 -0.8901 31 1 3.8514 0.5685 0.8409 32 1 3.9785 2.1767 0.0889 33 1 3.3161 -1.3356 -0.6582 34 1 3.7180 -1.1817 -2.3855 35 1 7.0929 -4.1224 -0.9453 36 1 4.1523 3.1687 -5.6422 37 1 5.6857 3.4250 -4.7567 38 1 5.5748 3.1779 -7.5183 39 1 6.9984 2.6531 -6.5590 40 1 6.4600 0.5452 -7.4772 41 1 4.7400 0.9790 -7.7083 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103215613.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:15:09 Heat of formation + Delta-G solvation = -6.699840 kcal Electronic energy + Delta-G solvation = -24534.228340 eV Core-core repulsion = 21029.930031 eV Total energy + Delta-G solvation = -3504.298309 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.74083 -40.59533 -38.71360 -37.66692 -36.60984 -34.52365 -33.05883 -31.34109 -29.59290 -29.34851 -28.38477 -27.19969 -25.45774 -24.31196 -23.10847 -22.35571 -20.88465 -19.77915 -19.04513 -18.52224 -17.82632 -17.41599 -17.09865 -17.01552 -16.49880 -16.12961 -15.85400 -15.60949 -15.12237 -14.78949 -14.36980 -14.27113 -14.08521 -13.61421 -13.56420 -13.28930 -13.15915 -12.85396 -12.69485 -12.64956 -12.50148 -12.05465 -11.99679 -11.97698 -11.87649 -11.68725 -11.24971 -11.02875 -10.69230 -10.56914 -10.23404 -9.52470 -9.36565 -8.22707 -6.23037 0.69216 1.20077 1.35212 1.38524 1.50838 1.86107 2.27391 2.39394 2.46776 2.90459 3.14612 3.36257 3.70630 3.77590 4.07904 4.10539 4.24799 4.27524 4.32090 4.38305 4.52094 4.55265 4.59735 4.76985 4.82391 4.85906 4.86093 4.92285 4.95635 5.05111 5.15793 5.19113 5.23177 5.42284 5.53166 5.57680 5.74922 6.20667 6.28271 6.30721 6.58161 6.73024 7.00503 7.28713 7.39826 8.94893 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.011619 B = 0.007199 C = 0.005201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2409.352118 B = 3888.461911 C = 5381.772846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.412 6.412 3 C 0.059 3.941 4 C 0.110 3.890 5 N -0.580 5.580 6 C 0.222 3.778 7 C -0.504 4.504 8 H 0.017 0.983 9 C 0.025 3.975 10 N -0.952 5.952 11 Si 0.938 3.062 12 H -0.260 1.260 13 H -0.287 1.287 14 H -0.250 1.250 15 C 0.592 3.408 16 O -0.583 6.583 17 C -0.026 4.026 18 N -0.232 5.232 19 N -0.366 5.366 20 H 0.452 0.548 21 C -0.018 4.018 22 C -0.202 4.202 23 C -0.046 4.046 24 C -0.103 4.103 25 C -0.028 4.028 26 H 0.090 0.910 27 H 0.060 0.940 28 H 0.043 0.957 29 H 0.090 0.910 30 H 0.044 0.956 31 H 0.081 0.919 32 H 0.098 0.902 33 H 0.041 0.959 34 H 0.060 0.940 35 H 0.264 0.736 36 H 0.082 0.918 37 H 0.057 0.943 38 H 0.116 0.884 39 H 0.076 0.924 40 H 0.098 0.902 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.071 7.901 -11.768 17.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.332 6.332 3 C -0.019 4.019 4 C -0.013 4.013 5 N -0.309 5.309 6 C 0.100 3.900 7 C -0.543 4.543 8 H 0.035 0.965 9 C -0.172 4.172 10 N -0.593 5.593 11 Si 0.761 3.239 12 H -0.185 1.185 13 H -0.212 1.212 14 H -0.174 1.174 15 C 0.380 3.620 16 O -0.464 6.464 17 C -0.185 4.185 18 N -0.067 5.067 19 N -0.080 5.080 20 H 0.297 0.703 21 C -0.145 4.145 22 C -0.212 4.212 23 C -0.084 4.084 24 C -0.141 4.141 25 C -0.066 4.066 26 H 0.108 0.892 27 H 0.078 0.922 28 H 0.061 0.939 29 H 0.108 0.892 30 H 0.062 0.938 31 H 0.099 0.901 32 H 0.116 0.884 33 H 0.059 0.941 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.101 0.899 37 H 0.076 0.924 38 H 0.135 0.865 39 H 0.095 0.905 40 H 0.116 0.884 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -9.976 7.170 -11.116 16.568 hybrid contribution 0.029 -0.556 0.106 0.567 sum -9.947 6.614 -11.010 16.245 Atomic orbital electron populations 1.22900 0.79798 1.03451 1.00810 1.87976 1.21361 1.28324 1.95534 1.22924 0.92730 0.84847 1.01356 1.21647 0.93570 0.99825 0.86250 1.47822 1.62263 1.08447 1.12385 1.19854 0.95493 0.75792 0.98873 1.21305 0.94575 0.92367 1.46029 0.96495 1.25527 0.97431 0.99767 0.94492 1.70071 1.21886 1.15177 1.52197 0.85863 0.80594 0.77961 0.79454 1.18507 1.21250 1.17415 1.17326 0.76291 0.85474 0.82923 1.90616 1.57322 1.14257 1.84168 1.21379 1.11536 0.90067 0.95512 1.74341 1.16637 1.18284 0.97475 1.43083 1.49679 1.09181 1.06066 0.70256 1.22936 1.05908 0.85044 1.00575 1.21334 1.08742 0.99544 0.91624 1.20474 1.01315 0.90446 0.96157 1.22516 1.00522 0.94928 0.96114 1.20862 1.03645 0.94388 0.87740 0.89164 0.92179 0.93883 0.89250 0.93820 0.90080 0.88385 0.94127 0.92272 0.92713 0.89930 0.92385 0.86530 0.90499 0.88382 0.87119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 11.01 113.37 1.25 1.89 16 2 O -0.41 -14.22 9.22 -148.98 -1.37 -15.60 16 3 C 0.06 1.87 6.28 71.98 0.45 2.33 16 4 C 0.11 4.29 5.91 86.38 0.51 4.80 16 5 N -0.58 -27.34 2.46 -829.69 -2.04 -29.38 16 6 C 0.22 11.27 3.58 85.63 0.31 11.57 16 7 C -0.50 -29.89 9.04 25.60 0.23 -29.66 16 8 H 0.02 1.15 8.06 -2.91 -0.02 1.12 16 9 C 0.02 1.45 5.47 84.65 0.46 1.92 16 10 N -0.95 -60.19 13.96 21.45 0.30 -59.89 16 11 Si 0.94 44.63 27.47 68.60 1.88 46.52 16 12 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 13 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 14 H -0.25 -11.39 6.54 99.48 0.65 -10.74 16 15 C 0.59 28.57 7.62 86.75 0.66 29.23 16 16 O -0.58 -28.57 16.42 -3.96 -0.06 -28.63 16 17 C -0.03 -1.18 6.81 42.42 0.29 -0.89 16 18 N -0.23 -10.29 8.10 -48.24 -0.39 -10.69 16 19 N -0.37 -12.48 6.84 -47.57 -0.33 -12.81 16 20 H 0.45 12.11 8.96 -220.00 -1.97 10.13 16 21 C -0.02 -0.53 8.12 41.47 0.34 -0.19 16 22 C -0.20 -7.37 6.83 -19.75 -0.13 -7.50 16 23 C -0.05 -1.25 6.77 30.44 0.21 -1.04 16 24 C -0.10 -1.76 7.15 31.71 0.23 -1.53 16 25 C -0.03 -0.48 6.79 30.61 0.21 -0.27 16 26 H 0.09 2.00 8.14 -2.38 -0.02 1.98 16 27 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 28 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 31 H 0.08 3.22 8.11 -2.39 -0.02 3.20 16 32 H 0.10 3.69 7.24 -2.38 -0.02 3.68 16 33 H 0.04 2.07 5.90 -2.38 -0.01 2.06 16 34 H 0.06 3.01 4.75 -2.39 -0.01 3.00 16 35 H 0.26 15.58 8.31 -92.70 -0.77 14.81 16 36 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 38 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 40 H 0.10 1.31 8.14 -2.38 -0.02 1.29 16 41 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -81.61 337.48 2.01 -79.60 By element: Atomic # 1 Polarization: 21.21 SS G_CDS: -0.98 Total: 20.23 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: 5.00 Total: 10.65 kcal Atomic # 7 Polarization: -110.30 SS G_CDS: -2.46 Total: -112.76 kcal Atomic # 8 Polarization: -42.79 SS G_CDS: -1.44 Total: -44.23 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 1.88 Total: 46.52 kcal Total: -81.61 2.01 -79.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103215613.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.895 kcal (2) G-P(sol) polarization free energy of solvation -81.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds