Wall clock time and date at job start Tue Mar 31 2020 03:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.39865 * 119.86011 * 2 1 4 4 C 1.29699 * 121.13550 * 199.42078 * 3 2 1 5 5 C 1.46727 * 119.54327 * 179.88786 * 4 3 2 6 6 O 1.21668 * 119.99711 * 186.65513 * 5 4 3 7 7 N 1.34778 * 120.00521 * 6.65210 * 5 4 3 8 8 C 1.46498 * 119.99862 * 176.69336 * 7 5 4 9 9 C 1.50699 * 109.46885 * 90.00594 * 8 7 5 10 10 H 1.07998 * 120.00067 * 359.97438 * 9 8 7 11 11 C 1.37882 * 120.00239 * 179.97438 * 9 8 7 12 12 N 1.31507 * 120.00302 * 179.97438 * 11 9 8 13 13 Si 1.86803 * 119.99507 * 0.02562 * 11 9 8 14 14 H 1.48503 * 109.47052 * 89.99977 * 13 11 9 15 15 H 1.48501 * 109.46859 * 209.99673 * 13 11 9 16 16 H 1.48497 * 109.47407 * 329.99790 * 13 11 9 17 17 C 1.46497 * 119.99631 * 356.70088 * 7 5 4 18 18 C 1.53000 * 109.46815 * 277.20234 * 17 7 5 19 19 C 1.53003 * 117.50112 * 243.62365 * 18 17 7 20 20 C 1.53002 * 60.00033 * 252.51187 * 19 18 17 21 21 C 1.50544 * 120.90547 * 359.60824 * 4 3 2 22 22 C 1.53011 * 109.60220 * 326.07965 * 21 4 3 23 23 C 1.34747 * 119.79922 * 179.76405 * 2 1 3 24 24 O 1.21253 * 120.12605 * 359.72027 * 23 2 1 25 25 H 1.08997 * 109.46974 * 270.23687 * 1 2 3 26 26 H 1.08999 * 109.47513 * 30.24201 * 1 2 3 27 27 H 1.09000 * 109.46723 * 150.24097 * 1 2 3 28 28 H 1.08991 * 109.47321 * 330.00416 * 8 7 5 29 29 H 1.09000 * 109.46813 * 210.00163 * 8 7 5 30 30 H 0.96999 * 119.99852 * 180.02562 * 12 11 9 31 31 H 1.08996 * 109.47541 * 37.19921 * 17 7 5 32 32 H 1.09001 * 109.47203 * 157.20826 * 17 7 5 33 33 H 1.09002 * 115.55309 * 29.33190 * 18 17 7 34 34 H 1.09004 * 117.49308 * 359.97438 * 19 18 17 35 35 H 1.08997 * 117.50311 * 145.01991 * 19 18 17 36 36 H 1.09003 * 117.49646 * 252.50788 * 20 19 18 37 37 H 1.09001 * 117.50238 * 107.48667 * 20 19 18 38 38 H 1.09001 * 109.45275 * 86.11844 * 21 4 3 39 39 H 1.08996 * 109.44802 * 206.03780 * 21 4 3 40 40 H 1.09000 * 109.51272 * 167.36833 * 22 21 4 41 41 H 1.09003 * 109.51786 * 287.52359 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1613 1.2130 0.0000 4 6 3.4032 1.2733 -0.3691 5 6 4.0994 2.5648 -0.3579 6 8 5.2233 2.6540 -0.8154 7 7 3.4940 3.6524 0.1590 8 6 4.2156 4.9250 0.2364 9 6 3.9860 5.7102 -1.0293 10 1 3.3652 5.3019 -1.8130 11 6 4.5687 6.9499 -1.1867 12 7 4.3688 7.6349 -2.2914 13 14 5.6431 7.6558 0.1686 14 1 7.0521 7.2410 -0.0502 15 1 5.5547 9.1380 0.1489 16 1 5.1767 7.1495 1.4844 17 6 2.1145 3.5617 0.6437 18 6 1.1495 3.7065 -0.5346 19 6 0.2150 4.9180 -0.5378 20 6 -0.3430 3.5222 -0.2523 21 6 4.1420 0.0354 -0.8029 22 6 3.6423 -1.1681 -0.0009 23 6 2.1346 -1.1693 0.0048 24 8 1.5270 -2.2185 0.0143 25 1 -0.3633 0.0042 1.0276 26 1 -0.3634 0.8878 -0.5176 27 1 -0.3633 -0.8922 -0.5101 28 1 5.2815 4.7316 0.3557 29 1 3.8523 5.4973 1.0899 30 1 4.7790 8.5069 -2.4022 31 1 1.9605 2.5949 1.1228 32 1 1.9296 4.3581 1.3647 33 1 1.5263 3.3587 -1.4965 34 1 0.2875 5.6116 0.2999 35 1 -0.0230 5.3676 -1.5018 36 1 -0.9480 3.0536 -1.0285 37 1 -0.6372 3.2978 0.7730 38 1 3.9672 -0.1383 -1.8647 39 1 5.2094 0.1699 -0.6285 40 1 4.0054 -2.0877 -0.4599 41 1 4.0103 -1.1015 1.0230 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103438208.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:10:40 Heat of formation + Delta-G solvation = 25.076097 kcal Electronic energy + Delta-G solvation = -24621.006154 eV Core-core repulsion = 21118.085752 eV Total energy + Delta-G solvation = -3502.920401 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.84048 -39.40687 -37.10024 -37.04687 -34.65894 -34.16891 -32.62222 -31.51971 -28.63250 -27.83857 -26.39310 -24.80735 -23.96510 -22.07054 -21.94512 -20.57682 -19.75090 -17.78455 -17.64141 -17.02098 -16.87108 -16.35205 -15.78269 -15.38059 -14.93187 -14.60672 -14.52160 -14.02365 -13.66337 -13.45185 -13.24392 -13.19715 -12.72698 -12.62919 -12.40405 -12.29742 -12.05119 -11.70988 -11.46400 -11.28841 -11.14118 -10.97663 -10.75717 -10.59030 -10.19367 -9.97823 -9.81546 -9.56077 -9.54075 -9.17222 -8.69597 -8.59003 -7.86356 -6.08915 -4.07319 0.99301 2.14187 2.36552 3.26900 3.31588 3.34209 3.39010 3.53837 3.89836 4.27024 4.38094 4.41021 4.54424 4.83274 4.88620 5.09189 5.18372 5.24396 5.28782 5.31875 5.37528 5.46307 5.50551 5.59785 5.62375 5.78794 5.88657 5.90181 6.02855 6.08951 6.26411 6.35238 6.49522 6.61140 6.71312 6.82918 7.19257 7.51013 7.56648 7.82965 8.03669 8.42242 8.67691 8.96641 9.50446 11.04314 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.020170 B = 0.005233 C = 0.004430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.899849 B = 5349.730237 C = 6318.726164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.466 5.466 3 N -0.195 5.195 4 C 0.086 3.914 5 C 0.560 3.440 6 O -0.522 6.522 7 N -0.563 5.563 8 C 0.214 3.786 9 C -0.521 4.521 10 H 0.078 0.922 11 C 0.074 3.926 12 N -0.896 5.896 13 Si 0.872 3.128 14 H -0.274 1.274 15 H -0.285 1.285 16 H -0.266 1.266 17 C 0.136 3.864 18 C -0.131 4.131 19 C -0.168 4.168 20 C -0.185 4.185 21 C -0.105 4.105 22 C -0.141 4.141 23 C 0.494 3.506 24 O -0.528 6.528 25 H 0.063 0.937 26 H 0.086 0.914 27 H 0.082 0.918 28 H 0.038 0.962 29 H 0.034 0.966 30 H 0.264 0.736 31 H 0.103 0.897 32 H 0.073 0.927 33 H 0.097 0.903 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.100 0.900 39 H 0.115 0.885 40 H 0.116 0.884 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.866 -13.262 6.897 16.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.286 5.286 3 N -0.007 5.007 4 C -0.107 4.107 5 C 0.343 3.657 6 O -0.396 6.396 7 N -0.293 5.293 8 C 0.094 3.906 9 C -0.560 4.560 10 H 0.096 0.904 11 C -0.129 4.129 12 N -0.535 5.535 13 Si 0.699 3.301 14 H -0.199 1.199 15 H -0.211 1.211 16 H -0.191 1.191 17 C 0.012 3.988 18 C -0.150 4.150 19 C -0.205 4.205 20 C -0.223 4.223 21 C -0.145 4.145 22 C -0.181 4.181 23 C 0.282 3.718 24 O -0.402 6.402 25 H 0.082 0.918 26 H 0.105 0.895 27 H 0.100 0.900 28 H 0.056 0.944 29 H 0.051 0.949 30 H 0.074 0.926 31 H 0.120 0.880 32 H 0.091 0.909 33 H 0.115 0.885 34 H 0.110 0.890 35 H 0.108 0.892 36 H 0.103 0.897 37 H 0.107 0.893 38 H 0.118 0.882 39 H 0.133 0.867 40 H 0.134 0.866 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -7.348 -13.191 6.895 16.599 hybrid contribution 0.958 0.130 0.246 0.998 sum -6.389 -13.061 7.141 16.199 Atomic orbital electron populations 1.21703 0.75357 1.03941 1.02807 1.49179 1.07473 1.01858 1.70068 1.75587 1.08517 1.04914 1.11676 1.25267 0.92297 0.97508 0.95665 1.17218 0.85802 0.82170 0.80475 1.90850 1.18448 1.84446 1.45895 1.47927 1.13502 1.10303 1.57524 1.19831 0.92785 0.79651 0.98313 1.21235 1.31487 1.01572 1.01660 0.90389 1.24822 0.95915 0.96681 0.95444 1.69883 1.44501 1.13326 1.25748 0.86920 0.81826 0.78488 0.82850 1.19925 1.21129 1.19117 1.21601 0.79900 1.02594 0.94678 1.22381 0.90311 1.02230 1.00070 1.22932 1.03807 0.90725 1.03029 1.22892 0.96732 1.01077 1.01602 1.20875 1.03113 0.89276 1.01274 1.21846 0.91146 1.01195 1.03962 1.21311 0.91350 0.83552 0.75605 1.90710 1.70446 1.30619 1.48449 0.91824 0.89502 0.89975 0.94358 0.94860 0.92604 0.87987 0.90850 0.88498 0.88964 0.89218 0.89719 0.89330 0.88229 0.86677 0.86603 0.87638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.04 10.73 59.85 0.64 1.68 16 2 N -0.47 -5.78 3.86 -67.07 -0.26 -6.04 16 3 N -0.19 -2.62 6.02 34.90 0.21 -2.41 16 4 C 0.09 1.25 6.68 -80.14 -0.54 0.72 16 5 C 0.56 10.59 7.55 -12.83 -0.10 10.50 16 6 O -0.52 -11.63 15.91 5.22 0.08 -11.55 16 7 N -0.56 -10.92 2.47 -176.60 -0.44 -11.35 16 8 C 0.21 4.92 4.24 -5.19 -0.02 4.90 16 9 C -0.52 -14.19 9.94 -34.44 -0.34 -14.53 16 10 H 0.08 2.35 8.06 -52.49 -0.42 1.93 16 11 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 12 N -0.90 -26.83 13.96 55.43 0.77 -26.06 16 13 Si 0.87 20.75 27.47 -169.99 -4.67 16.09 16 14 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 15 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 16 H -0.27 -5.93 6.54 56.52 0.37 -5.56 16 17 C 0.14 2.14 5.31 -4.04 -0.02 2.12 16 18 C -0.13 -2.03 4.65 -90.62 -0.42 -2.45 16 19 C -0.17 -2.54 10.18 -26.73 -0.27 -2.81 16 20 C -0.19 -2.25 9.23 -26.73 -0.25 -2.50 16 21 C -0.11 -1.21 5.81 -27.95 -0.16 -1.37 16 22 C -0.14 -1.41 6.20 -27.84 -0.17 -1.58 16 23 C 0.49 6.32 7.55 -10.96 -0.08 6.24 16 24 O -0.53 -8.09 16.67 5.58 0.09 -8.00 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.09 0.81 6.87 -51.93 -0.36 0.45 16 27 H 0.08 0.82 7.41 -51.93 -0.39 0.44 16 28 H 0.04 0.93 6.90 -51.93 -0.36 0.57 16 29 H 0.03 0.73 6.91 -51.93 -0.36 0.37 16 30 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 31 H 0.10 1.43 5.25 -53.87 -0.28 1.15 16 32 H 0.07 1.12 7.55 -51.93 -0.39 0.72 16 33 H 0.10 1.74 8.14 -51.93 -0.42 1.32 16 34 H 0.09 1.38 8.03 -51.93 -0.42 0.96 16 35 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 36 H 0.08 0.94 7.95 -51.93 -0.41 0.53 16 37 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.11 1.28 7.63 -51.93 -0.40 0.89 16 40 H 0.12 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 338.53 15.07 5.10 5.10 Total: -1.00 -32.78 338.53 -6.84 -39.62 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -5.91 Total: 1.72 kcal Atomic # 6 Polarization: 4.71 SS G_CDS: -1.83 Total: 2.88 kcal Atomic # 7 Polarization: -46.15 SS G_CDS: 0.29 Total: -45.86 kcal Atomic # 8 Polarization: -19.72 SS G_CDS: 0.18 Total: -19.55 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.67 Total: 16.09 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.78 -6.84 -39.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103438208.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.698 kcal (2) G-P(sol) polarization free energy of solvation -32.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds