Wall clock time and date at job start Tue Mar 31 2020 03:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.39865 * 119.86011 * 2 1 4 4 C 1.29699 * 121.13550 * 199.42078 * 3 2 1 5 5 C 1.46727 * 119.54327 * 179.88786 * 4 3 2 6 6 O 1.21668 * 119.99711 * 186.65513 * 5 4 3 7 7 N 1.34778 * 120.00521 * 6.65210 * 5 4 3 8 8 C 1.46498 * 119.99862 * 176.69336 * 7 5 4 9 9 C 1.50699 * 109.46885 * 90.00594 * 8 7 5 10 10 H 1.07998 * 120.00067 * 359.97438 * 9 8 7 11 11 C 1.37882 * 120.00239 * 179.97438 * 9 8 7 12 12 N 1.31507 * 120.00302 * 179.97438 * 11 9 8 13 13 Si 1.86803 * 119.99507 * 0.02562 * 11 9 8 14 14 H 1.48503 * 109.47052 * 89.99977 * 13 11 9 15 15 H 1.48501 * 109.46859 * 209.99673 * 13 11 9 16 16 H 1.48497 * 109.47407 * 329.99790 * 13 11 9 17 17 C 1.46497 * 119.99631 * 356.70088 * 7 5 4 18 18 C 1.53000 * 109.46815 * 277.20234 * 17 7 5 19 19 C 1.53003 * 117.50112 * 243.62365 * 18 17 7 20 20 C 1.53002 * 60.00033 * 252.51187 * 19 18 17 21 21 C 1.50544 * 120.90547 * 359.60824 * 4 3 2 22 22 C 1.53011 * 109.60220 * 326.07965 * 21 4 3 23 23 C 1.34747 * 119.79922 * 179.76405 * 2 1 3 24 24 O 1.21253 * 120.12605 * 359.72027 * 23 2 1 25 25 H 1.08997 * 109.46974 * 270.23687 * 1 2 3 26 26 H 1.08999 * 109.47513 * 30.24201 * 1 2 3 27 27 H 1.09000 * 109.46723 * 150.24097 * 1 2 3 28 28 H 1.08991 * 109.47321 * 330.00416 * 8 7 5 29 29 H 1.09000 * 109.46813 * 210.00163 * 8 7 5 30 30 H 0.96999 * 119.99852 * 180.02562 * 12 11 9 31 31 H 1.08996 * 109.47541 * 37.19921 * 17 7 5 32 32 H 1.09001 * 109.47203 * 157.20826 * 17 7 5 33 33 H 1.09002 * 115.55309 * 29.33190 * 18 17 7 34 34 H 1.09004 * 117.49308 * 359.97438 * 19 18 17 35 35 H 1.08997 * 117.50311 * 145.01991 * 19 18 17 36 36 H 1.09003 * 117.49646 * 252.50788 * 20 19 18 37 37 H 1.09001 * 117.50238 * 107.48667 * 20 19 18 38 38 H 1.09001 * 109.45275 * 86.11844 * 21 4 3 39 39 H 1.08996 * 109.44802 * 206.03780 * 21 4 3 40 40 H 1.09000 * 109.51272 * 167.36833 * 22 21 4 41 41 H 1.09003 * 109.51786 * 287.52359 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1613 1.2130 0.0000 4 6 3.4032 1.2733 -0.3691 5 6 4.0994 2.5648 -0.3579 6 8 5.2233 2.6540 -0.8154 7 7 3.4940 3.6524 0.1590 8 6 4.2156 4.9250 0.2364 9 6 3.9860 5.7102 -1.0293 10 1 3.3652 5.3019 -1.8130 11 6 4.5687 6.9499 -1.1867 12 7 4.3688 7.6349 -2.2914 13 14 5.6431 7.6558 0.1686 14 1 7.0521 7.2410 -0.0502 15 1 5.5547 9.1380 0.1489 16 1 5.1767 7.1495 1.4844 17 6 2.1145 3.5617 0.6437 18 6 1.1495 3.7065 -0.5346 19 6 0.2150 4.9180 -0.5378 20 6 -0.3430 3.5222 -0.2523 21 6 4.1420 0.0354 -0.8029 22 6 3.6423 -1.1681 -0.0009 23 6 2.1346 -1.1693 0.0048 24 8 1.5270 -2.2185 0.0143 25 1 -0.3633 0.0042 1.0276 26 1 -0.3634 0.8878 -0.5176 27 1 -0.3633 -0.8922 -0.5101 28 1 5.2815 4.7316 0.3557 29 1 3.8523 5.4973 1.0899 30 1 4.7790 8.5069 -2.4022 31 1 1.9605 2.5949 1.1228 32 1 1.9296 4.3581 1.3647 33 1 1.5263 3.3587 -1.4965 34 1 0.2875 5.6116 0.2999 35 1 -0.0230 5.3676 -1.5018 36 1 -0.9480 3.0536 -1.0285 37 1 -0.6372 3.2978 0.7730 38 1 3.9672 -0.1383 -1.8647 39 1 5.2094 0.1699 -0.6285 40 1 4.0054 -2.0877 -0.4599 41 1 4.0103 -1.1015 1.0230 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103438208.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:10:39 Heat of formation + Delta-G solvation = 3.696911 kcal Electronic energy + Delta-G solvation = -24621.933225 eV Core-core repulsion = 21118.085752 eV Total energy + Delta-G solvation = -3503.847472 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.94532 -40.76245 -38.40056 -38.19633 -36.19484 -35.16353 -34.58266 -32.69252 -30.34587 -28.87848 -27.75275 -25.89900 -25.31625 -23.56530 -23.07385 -21.92426 -21.05795 -19.08111 -18.85916 -18.77828 -18.06560 -17.37490 -17.15464 -16.72453 -16.43699 -15.87362 -15.81746 -15.37969 -14.99923 -14.76540 -14.43638 -14.34789 -14.26209 -13.80046 -13.56914 -13.44276 -13.30033 -13.10393 -12.95436 -12.56268 -12.46991 -12.35743 -12.17488 -11.93726 -11.86156 -11.64684 -11.26033 -11.06824 -10.79353 -10.73768 -10.40878 -9.74587 -9.47160 -8.25609 -6.29282 -0.19423 1.11963 1.34275 1.38035 1.41451 1.48970 1.99651 2.16186 2.36735 2.84299 3.08899 3.12036 3.44148 3.49719 3.90490 3.94174 4.02625 4.11944 4.18324 4.29549 4.50928 4.53965 4.57170 4.70244 4.71890 4.73294 4.82134 4.83217 4.90008 4.93358 4.93925 5.13119 5.14628 5.17052 5.38259 5.41972 5.49996 5.62921 6.28521 6.45557 6.55934 6.72791 6.81242 7.13462 7.34496 8.91170 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.020170 B = 0.005233 C = 0.004430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.899849 B = 5349.730237 C = 6318.726164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.465 5.465 3 N -0.183 5.183 4 C 0.079 3.921 5 C 0.557 3.443 6 O -0.565 6.565 7 N -0.572 5.572 8 C 0.221 3.779 9 C -0.519 4.519 10 H 0.031 0.969 11 C 0.012 3.988 12 N -0.947 5.947 13 Si 0.941 3.059 14 H -0.275 1.275 15 H -0.282 1.282 16 H -0.236 1.236 17 C 0.138 3.862 18 C -0.149 4.149 19 C -0.190 4.190 20 C -0.140 4.140 21 C -0.100 4.100 22 C -0.132 4.132 23 C 0.490 3.510 24 O -0.553 6.553 25 H 0.081 0.919 26 H 0.094 0.906 27 H 0.082 0.918 28 H 0.029 0.971 29 H 0.054 0.946 30 H 0.265 0.735 31 H 0.125 0.875 32 H 0.081 0.919 33 H 0.065 0.935 34 H 0.093 0.907 35 H 0.070 0.930 36 H 0.100 0.900 37 H 0.117 0.883 38 H 0.103 0.897 39 H 0.119 0.881 40 H 0.138 0.862 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.620 -14.735 9.415 19.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.285 5.285 3 N 0.004 4.996 4 C -0.114 4.114 5 C 0.342 3.658 6 O -0.442 6.442 7 N -0.301 5.301 8 C 0.100 3.900 9 C -0.558 4.558 10 H 0.050 0.950 11 C -0.185 4.185 12 N -0.588 5.588 13 Si 0.764 3.236 14 H -0.201 1.201 15 H -0.207 1.207 16 H -0.159 1.159 17 C 0.015 3.985 18 C -0.168 4.168 19 C -0.227 4.227 20 C -0.177 4.177 21 C -0.140 4.140 22 C -0.171 4.171 23 C 0.280 3.720 24 O -0.429 6.429 25 H 0.100 0.900 26 H 0.113 0.887 27 H 0.101 0.899 28 H 0.047 0.953 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.142 0.858 32 H 0.100 0.900 33 H 0.083 0.917 34 H 0.112 0.888 35 H 0.089 0.911 36 H 0.118 0.882 37 H 0.135 0.865 38 H 0.121 0.879 39 H 0.137 0.863 40 H 0.156 0.844 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -8.148 -14.690 9.434 19.267 hybrid contribution 1.066 0.544 -0.638 1.356 sum -7.082 -14.146 8.796 18.101 Atomic orbital electron populations 1.21923 0.73954 1.04395 1.04139 1.49353 1.08297 1.01341 1.69492 1.75416 1.08014 1.05779 1.10430 1.24789 0.92883 0.96406 0.97342 1.17746 0.85473 0.83384 0.79178 1.90813 1.20400 1.85466 1.47505 1.47973 1.14864 1.09330 1.57885 1.19536 0.92902 0.81072 0.96539 1.21408 1.30141 1.01959 1.02272 0.95027 1.25768 0.97512 0.97181 0.98083 1.70050 1.46341 1.13994 1.28376 0.85813 0.79298 0.77657 0.80788 1.20059 1.20730 1.15860 1.21818 0.77804 1.04112 0.94717 1.22234 0.92445 1.03366 0.98791 1.22947 1.05381 0.92077 1.02322 1.22984 0.93605 0.97491 1.03640 1.20897 1.02986 0.88377 1.01702 1.21890 0.89082 1.01172 1.04986 1.21775 0.92430 0.83072 0.74739 1.90707 1.71207 1.31334 1.49647 0.90046 0.88698 0.89901 0.95321 0.92857 0.92558 0.85786 0.90023 0.91694 0.88811 0.91146 0.88182 0.86454 0.87877 0.86315 0.84412 0.85845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.65 10.73 127.77 1.37 3.02 16 2 N -0.46 -10.33 3.86 -484.52 -1.87 -12.20 16 3 N -0.18 -4.57 6.02 -43.50 -0.26 -4.83 16 4 C 0.08 2.20 6.68 45.04 0.30 2.50 16 5 C 0.56 21.17 7.55 86.46 0.65 21.82 16 6 O -0.56 -25.74 15.91 -4.25 -0.07 -25.81 16 7 N -0.57 -22.11 2.47 -830.87 -2.06 -24.17 16 8 C 0.22 10.15 4.24 85.63 0.36 10.51 16 9 C -0.52 -29.21 9.94 25.60 0.25 -28.96 16 10 H 0.03 2.02 8.06 -2.91 -0.02 1.99 16 11 C 0.01 0.69 5.47 84.66 0.46 1.16 16 12 N -0.95 -58.83 13.96 21.45 0.30 -58.53 16 13 Si 0.94 42.84 27.47 68.60 1.88 44.72 16 14 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 15 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 16 H -0.24 -9.47 6.54 99.48 0.65 -8.82 16 17 C 0.14 4.14 5.31 86.38 0.46 4.60 16 18 C -0.15 -4.56 4.65 -10.79 -0.05 -4.61 16 19 C -0.19 -5.72 10.18 30.60 0.31 -5.41 16 20 C -0.14 -3.04 9.23 30.60 0.28 -2.75 16 21 C -0.10 -2.13 5.81 29.80 0.17 -1.96 16 22 C -0.13 -2.25 6.20 29.87 0.19 -2.06 16 23 C 0.49 11.29 7.55 87.68 0.66 11.95 16 24 O -0.55 -15.65 16.67 -2.94 -0.05 -15.70 16 25 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.09 1.46 6.87 -2.39 -0.02 1.44 16 27 H 0.08 1.45 7.41 -2.39 -0.02 1.43 16 28 H 0.03 1.38 6.90 -2.39 -0.02 1.36 16 29 H 0.05 2.24 6.91 -2.39 -0.02 2.22 16 30 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 31 H 0.13 3.15 5.25 -4.92 -0.03 3.13 16 32 H 0.08 2.31 7.55 -2.39 -0.02 2.29 16 33 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 34 H 0.09 2.76 8.03 -2.38 -0.02 2.74 16 35 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 36 H 0.10 1.91 7.95 -2.39 -0.02 1.89 16 37 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 39 H 0.12 2.49 7.63 -2.39 -0.02 2.47 16 40 H 0.14 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -74.45 338.53 4.27 -70.18 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: 0.97 Total: 16.52 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: 5.43 Total: 9.81 kcal Atomic # 7 Polarization: -95.83 SS G_CDS: -3.89 Total: -99.72 kcal Atomic # 8 Polarization: -41.39 SS G_CDS: -0.12 Total: -41.51 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 1.88 Total: 44.72 kcal Total: -74.45 4.27 -70.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103438208.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.877 kcal (2) G-P(sol) polarization free energy of solvation -74.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds