Wall clock time and date at job start Tue Mar 31 2020 03:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86800 * 120.00045 * 2 1 4 4 H 1.48496 * 109.46681 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47048 * 299.99727 * 3 2 1 6 6 H 1.48501 * 109.47100 * 60.00176 * 3 2 1 7 7 C 1.38950 * 119.99401 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99459 * 179.97438 * 7 2 1 9 9 N 1.37095 * 120.00380 * 359.97438 * 7 2 1 10 10 C 1.34773 * 119.99878 * 179.97438 * 9 7 2 11 11 O 1.21297 * 120.00195 * 359.72970 * 10 9 7 12 12 C 1.50706 * 120.00081 * 180.02562 * 10 9 7 13 13 N 1.46895 * 109.47182 * 179.72734 * 12 10 9 14 14 C 1.46840 * 111.00229 * 66.04782 * 13 12 10 15 15 C 1.53039 * 109.52528 * 185.83875 * 14 13 12 16 16 C 1.53115 * 109.27819 * 300.81928 * 15 14 13 17 17 C 1.53118 * 109.16177 * 57.65187 * 16 15 14 18 18 H 1.09004 * 109.50235 * 62.28754 * 17 16 15 19 19 C 1.53004 * 109.50254 * 182.36725 * 17 16 15 20 20 N 1.46498 * 109.46992 * 294.99943 * 19 17 16 21 21 C 1.35313 * 125.86724 * 125.00494 * 20 19 17 22 22 C 1.35348 * 106.17732 * 179.97438 * 21 20 19 23 23 N 1.33776 * 106.49601 * 359.97438 * 22 21 20 24 24 N 1.28636 * 108.88285 * 359.73718 * 23 22 21 25 25 C 1.46848 * 110.99930 * 190.25648 * 13 12 10 26 26 H 0.97004 * 120.00112 * 0.02562 * 1 2 3 27 27 H 0.96998 * 119.99597 * 0.02562 * 9 7 2 28 28 H 1.09001 * 109.46564 * 299.73030 * 12 10 9 29 29 H 1.08998 * 109.47012 * 59.72084 * 12 10 9 30 30 H 1.08999 * 109.46429 * 305.85140 * 14 13 12 31 31 H 1.09002 * 109.47060 * 65.82053 * 14 13 12 32 32 H 1.08995 * 109.50260 * 60.76014 * 15 14 13 33 33 H 1.09006 * 109.50518 * 180.87539 * 15 14 13 34 34 H 1.09002 * 109.52270 * 177.56234 * 16 15 14 35 35 H 1.09005 * 109.52007 * 297.68498 * 16 15 14 36 36 H 1.08996 * 109.47076 * 55.00417 * 19 17 16 37 37 H 1.09008 * 109.46775 * 175.00176 * 19 17 16 38 38 H 1.07997 * 126.90802 * 359.97438 * 21 20 19 39 39 H 1.07994 * 126.75668 * 180.02562 * 22 21 20 40 40 H 1.09011 * 109.46223 * 294.17696 * 25 13 12 41 41 H 1.09000 * 109.46139 * 54.14011 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3463 0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0087 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3232 -2.3907 0.0016 10 6 1.9971 -3.5578 0.0016 11 8 3.2100 -3.5579 -0.0043 12 6 1.2435 -4.8630 0.0022 13 7 2.1981 -5.9795 -0.0045 14 6 2.9687 -6.0206 1.2447 15 6 4.0485 -7.1005 1.1444 16 6 3.3851 -8.4563 0.8873 17 6 2.5498 -8.3724 -0.3932 18 1 3.2018 -8.1562 -1.2395 19 6 1.8360 -9.7056 -0.6258 20 7 2.8284 -10.7531 -0.8788 21 6 2.9434 -11.9172 -0.1986 22 6 3.9819 -12.5803 -0.7589 23 7 4.4449 -11.8000 -1.7419 24 7 3.7364 -10.7275 -1.7908 25 6 1.5135 -7.2556 -0.2483 26 1 -0.4850 0.8401 -0.0004 27 1 0.3532 -2.3906 0.0016 28 1 0.6209 -4.9225 0.8949 29 1 0.6128 -4.9187 -0.8850 30 1 3.4387 -5.0517 1.4136 31 1 2.3017 -6.2501 2.0757 32 1 4.7241 -6.8642 0.3223 33 1 4.6103 -7.1413 2.0776 34 1 4.1528 -9.2214 0.7720 35 1 2.7399 -8.7114 1.7281 36 1 1.2520 -9.9640 0.2575 37 1 1.1732 -9.6175 -1.4867 38 1 2.3300 -12.2502 0.6255 39 1 4.3614 -13.5492 -0.4699 40 1 0.8532 -7.4794 0.5897 41 1 0.9265 -7.1837 -1.1639 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000119524641.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:19:11 Heat of formation + Delta-G solvation = 65.574489 kcal Electronic energy + Delta-G solvation = -23252.140443 eV Core-core repulsion = 19783.268935 eV Total energy + Delta-G solvation = -3468.871508 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.42448 -39.45959 -37.85262 -35.45448 -33.93464 -32.94553 -31.45866 -31.21171 -31.15913 -27.66111 -26.84536 -24.71704 -23.09451 -22.89296 -22.65756 -21.24257 -19.69629 -19.18216 -17.89652 -17.72043 -16.64655 -16.04142 -15.68662 -15.13511 -14.94012 -14.75496 -14.66469 -14.25326 -14.14693 -13.81127 -13.57999 -13.44046 -12.89649 -12.56918 -12.33850 -12.01393 -11.86022 -11.54214 -11.47779 -11.26549 -11.07894 -11.01597 -10.73257 -10.61487 -10.40120 -10.34626 -10.23101 -10.13337 -9.58360 -9.48824 -8.46653 -7.99522 -7.88132 -6.43137 -3.83741 1.42118 2.12727 2.41655 3.15477 3.26276 3.33494 3.80803 3.89286 4.08475 4.20940 4.34093 4.49181 4.56795 4.76736 4.86328 4.92547 5.00954 5.05246 5.12680 5.23205 5.29452 5.37692 5.50084 5.52234 5.58145 5.67858 5.75969 5.87054 5.91829 5.95281 6.00144 6.11055 6.25371 6.35347 6.43084 6.51212 7.24823 7.36535 7.54441 8.05476 8.35106 8.60452 9.17200 9.53138 10.04868 10.74708 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.044307 B = 0.002672 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.798423 B =10475.484499 C =10627.437050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.021 3.979 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.297 4.297 8 H 0.104 0.896 9 N -0.565 5.565 10 C 0.443 3.557 11 O -0.576 6.576 12 C 0.047 3.953 13 N -0.513 5.513 14 C 0.052 3.948 15 C -0.111 4.111 16 C -0.113 4.113 17 C -0.098 4.098 18 H 0.101 0.899 19 C 0.118 3.882 20 N -0.282 5.282 21 C -0.054 4.054 22 C -0.056 4.056 23 N -0.276 5.276 24 N -0.077 5.077 25 C 0.065 3.935 26 H 0.271 0.729 27 H 0.392 0.608 28 H 0.047 0.953 29 H 0.089 0.911 30 H 0.105 0.895 31 H 0.021 0.979 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.056 0.944 35 H 0.058 0.942 36 H 0.105 0.895 37 H 0.103 0.897 38 H 0.188 0.812 39 H 0.187 0.813 40 H 0.033 0.967 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.774 -21.605 3.476 21.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.180 4.180 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.427 4.427 8 H 0.121 0.879 9 N -0.201 5.201 10 C 0.229 3.771 11 O -0.460 6.460 12 C -0.084 4.084 13 N -0.237 5.237 14 C -0.075 4.075 15 C -0.149 4.149 16 C -0.151 4.151 17 C -0.117 4.117 18 H 0.119 0.881 19 C -0.003 4.003 20 N -0.076 5.076 21 C -0.205 4.205 22 C -0.213 4.213 23 N -0.142 5.142 24 N -0.057 5.057 25 C -0.064 4.064 26 H 0.081 0.919 27 H 0.225 0.775 28 H 0.065 0.935 29 H 0.107 0.893 30 H 0.123 0.877 31 H 0.039 0.961 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.123 0.877 37 H 0.121 0.879 38 H 0.205 0.795 39 H 0.204 0.796 40 H 0.051 0.949 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.150 -20.523 1.933 20.614 hybrid contribution -1.544 0.079 1.669 2.275 sum -1.694 -20.444 3.602 20.828 Atomic orbital electron populations 1.69619 1.05940 1.28042 1.50786 1.25260 0.95635 0.99726 0.97372 0.85807 0.79739 0.81154 0.77700 1.19205 1.20731 1.20795 1.19745 0.93385 0.82176 1.47374 0.87856 1.41872 1.09180 1.04604 1.64490 1.19721 0.88423 0.84520 0.84455 1.90497 1.13669 1.86842 1.54975 1.21838 0.93871 0.91197 1.01499 1.61404 1.24901 1.00967 1.36415 1.22275 0.95067 1.01695 0.88478 1.21510 0.98158 0.93121 1.02135 1.21634 0.98849 0.98475 0.96159 1.21509 0.98085 0.91247 1.00880 0.88053 1.22247 0.88393 0.85702 1.03967 1.47510 1.23509 1.14716 1.21874 1.23677 1.04303 0.88895 1.03607 1.23612 0.97637 1.02659 0.97427 1.75157 1.21123 0.99397 1.18529 1.78364 0.99216 1.17817 1.10307 1.21978 0.94299 0.89288 1.00844 0.91942 0.77521 0.93481 0.89275 0.87714 0.96083 0.90697 0.91699 0.92519 0.92340 0.87675 0.87931 0.79522 0.79586 0.94909 0.90334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.35 13.05 55.50 0.72 -23.62 16 2 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 3 Si 0.93 20.96 29.55 -169.99 -5.02 15.94 16 4 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.30 -8.20 9.68 -14.93 -0.14 -8.35 16 8 H 0.10 3.01 7.16 -52.48 -0.38 2.63 16 9 N -0.56 -14.08 5.29 -10.96 -0.06 -14.14 16 10 C 0.44 10.23 7.46 -10.98 -0.08 10.15 16 11 O -0.58 -15.26 13.92 5.54 0.08 -15.18 16 12 C 0.05 0.81 5.45 -4.98 -0.03 0.78 16 13 N -0.51 -8.10 4.39 -236.11 -1.04 -9.13 16 14 C 0.05 0.82 5.11 -3.84 -0.02 0.80 16 15 C -0.11 -1.49 6.09 -26.65 -0.16 -1.65 16 16 C -0.11 -1.21 5.14 -26.61 -0.14 -1.35 16 17 C -0.10 -1.00 2.40 -90.54 -0.22 -1.22 16 18 H 0.10 1.32 8.01 -51.93 -0.42 0.90 16 19 C 0.12 0.86 5.85 -4.04 -0.02 0.84 16 20 N -0.28 -2.71 2.94 -61.26 -0.18 -2.89 16 21 C -0.05 -0.40 11.57 -17.05 -0.20 -0.60 16 22 C -0.06 -0.51 12.05 -17.74 -0.21 -0.73 16 23 N -0.28 -3.66 12.41 30.23 0.38 -3.29 16 24 N -0.08 -1.02 12.84 60.35 0.77 -0.24 16 25 C 0.06 0.72 4.74 -3.83 -0.02 0.70 16 26 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 27 H 0.39 9.31 7.90 -40.82 -0.32 8.99 16 28 H 0.05 0.73 8.12 -51.93 -0.42 0.31 16 29 H 0.09 1.36 7.98 -51.93 -0.41 0.95 16 30 H 0.10 2.05 5.80 -51.93 -0.30 1.75 16 31 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.06 0.64 7.83 -51.93 -0.41 0.24 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.10 0.46 8.07 -51.93 -0.42 0.04 16 37 H 0.10 0.63 8.14 -51.92 -0.42 0.21 16 38 H 0.19 0.63 8.06 -52.49 -0.42 0.21 16 39 H 0.19 1.06 8.06 -52.49 -0.42 0.64 16 40 H 0.03 0.32 8.14 -51.92 -0.42 -0.11 16 41 H 0.08 0.79 8.01 -51.93 -0.42 0.37 16 LS Contribution 338.91 15.07 5.11 5.11 Total: -1.00 -33.61 338.91 -6.59 -40.20 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -6.01 Total: 7.40 kcal Atomic # 6 Polarization: 1.19 SS G_CDS: -1.34 Total: -0.15 kcal Atomic # 7 Polarization: -53.92 SS G_CDS: 0.60 Total: -53.32 kcal Atomic # 8 Polarization: -15.26 SS G_CDS: 0.08 Total: -15.18 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.61 -6.59 -40.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119524641.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.774 kcal (2) G-P(sol) polarization free energy of solvation -33.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds