Wall clock time and date at job start Tue Mar 31 2020 03:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86800 * 120.00045 * 2 1 4 4 H 1.48496 * 109.46681 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47048 * 299.99727 * 3 2 1 6 6 H 1.48501 * 109.47100 * 60.00176 * 3 2 1 7 7 C 1.38950 * 119.99401 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99459 * 179.97438 * 7 2 1 9 9 N 1.37095 * 120.00380 * 359.97438 * 7 2 1 10 10 C 1.34773 * 119.99878 * 179.97438 * 9 7 2 11 11 O 1.21297 * 120.00195 * 359.72970 * 10 9 7 12 12 C 1.50706 * 120.00081 * 180.02562 * 10 9 7 13 13 N 1.46895 * 109.47182 * 179.72734 * 12 10 9 14 14 C 1.46840 * 111.00229 * 66.04782 * 13 12 10 15 15 C 1.53039 * 109.52528 * 185.83875 * 14 13 12 16 16 C 1.53115 * 109.27819 * 300.81928 * 15 14 13 17 17 C 1.53118 * 109.16177 * 57.65187 * 16 15 14 18 18 H 1.09004 * 109.50235 * 62.28754 * 17 16 15 19 19 C 1.53004 * 109.50254 * 182.36725 * 17 16 15 20 20 N 1.46498 * 109.46992 * 294.99943 * 19 17 16 21 21 C 1.35313 * 125.86724 * 125.00494 * 20 19 17 22 22 C 1.35348 * 106.17732 * 179.97438 * 21 20 19 23 23 N 1.33776 * 106.49601 * 359.97438 * 22 21 20 24 24 N 1.28636 * 108.88285 * 359.73718 * 23 22 21 25 25 C 1.46848 * 110.99930 * 190.25648 * 13 12 10 26 26 H 0.97004 * 120.00112 * 0.02562 * 1 2 3 27 27 H 0.96998 * 119.99597 * 0.02562 * 9 7 2 28 28 H 1.09001 * 109.46564 * 299.73030 * 12 10 9 29 29 H 1.08998 * 109.47012 * 59.72084 * 12 10 9 30 30 H 1.08999 * 109.46429 * 305.85140 * 14 13 12 31 31 H 1.09002 * 109.47060 * 65.82053 * 14 13 12 32 32 H 1.08995 * 109.50260 * 60.76014 * 15 14 13 33 33 H 1.09006 * 109.50518 * 180.87539 * 15 14 13 34 34 H 1.09002 * 109.52270 * 177.56234 * 16 15 14 35 35 H 1.09005 * 109.52007 * 297.68498 * 16 15 14 36 36 H 1.08996 * 109.47076 * 55.00417 * 19 17 16 37 37 H 1.09008 * 109.46775 * 175.00176 * 19 17 16 38 38 H 1.07997 * 126.90802 * 359.97438 * 21 20 19 39 39 H 1.07994 * 126.75668 * 180.02562 * 22 21 20 40 40 H 1.09011 * 109.46223 * 294.17696 * 25 13 12 41 41 H 1.09000 * 109.46139 * 54.14011 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3463 0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0087 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3232 -2.3907 0.0016 10 6 1.9971 -3.5578 0.0016 11 8 3.2100 -3.5579 -0.0043 12 6 1.2435 -4.8630 0.0022 13 7 2.1981 -5.9795 -0.0045 14 6 2.9687 -6.0206 1.2447 15 6 4.0485 -7.1005 1.1444 16 6 3.3851 -8.4563 0.8873 17 6 2.5498 -8.3724 -0.3932 18 1 3.2018 -8.1562 -1.2395 19 6 1.8360 -9.7056 -0.6258 20 7 2.8284 -10.7531 -0.8788 21 6 2.9434 -11.9172 -0.1986 22 6 3.9819 -12.5803 -0.7589 23 7 4.4449 -11.8000 -1.7419 24 7 3.7364 -10.7275 -1.7908 25 6 1.5135 -7.2556 -0.2483 26 1 -0.4850 0.8401 -0.0004 27 1 0.3532 -2.3906 0.0016 28 1 0.6209 -4.9225 0.8949 29 1 0.6128 -4.9187 -0.8850 30 1 3.4387 -5.0517 1.4136 31 1 2.3017 -6.2501 2.0757 32 1 4.7241 -6.8642 0.3223 33 1 4.6103 -7.1413 2.0776 34 1 4.1528 -9.2214 0.7720 35 1 2.7399 -8.7114 1.7281 36 1 1.2520 -9.9640 0.2575 37 1 1.1732 -9.6175 -1.4867 38 1 2.3300 -12.2502 0.6255 39 1 4.3614 -13.5492 -0.4699 40 1 0.8532 -7.4794 0.5897 41 1 0.9265 -7.1837 -1.1639 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000119524641.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:19:10 Heat of formation + Delta-G solvation = 39.987929 kcal Electronic energy + Delta-G solvation = -23253.249960 eV Core-core repulsion = 19783.268935 eV Total energy + Delta-G solvation = -3469.981025 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -44.11556 -40.74236 -39.40849 -36.45786 -35.80152 -34.05292 -33.22501 -32.32680 -31.85845 -29.06331 -27.67312 -26.50551 -24.14017 -23.85421 -23.41328 -22.12208 -20.94826 -20.61791 -19.85841 -18.40810 -17.71389 -17.40261 -16.73132 -16.53246 -16.27375 -15.83833 -15.73536 -15.55668 -15.23626 -15.02000 -14.87922 -14.61364 -14.03292 -13.81733 -13.49547 -13.22507 -13.20293 -12.95529 -12.66296 -12.58681 -12.40814 -12.15886 -12.13008 -11.84618 -11.74027 -11.64475 -11.43352 -11.36522 -10.90373 -10.26105 -10.22963 -9.98771 -9.14486 -8.46676 -5.94677 0.77418 1.35667 1.40931 1.54443 1.56184 1.71449 2.07141 2.28340 2.75438 3.20541 3.36941 3.49745 3.69904 3.76320 3.78357 4.05476 4.17827 4.26414 4.30651 4.37736 4.39049 4.41453 4.45675 4.48265 4.56168 4.64877 4.71492 4.76209 4.86081 4.94929 5.03055 5.14495 5.27108 5.34378 5.40759 5.42388 5.76892 5.91916 6.11430 6.29227 6.62093 7.14375 7.58239 7.62849 8.14923 8.70957 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.044307 B = 0.002672 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.798423 B =10475.484499 C =10627.437050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.013 4.013 3 Si 0.990 3.010 4 H -0.276 1.276 5 H -0.271 1.271 6 H -0.270 1.270 7 C -0.330 4.330 8 H 0.076 0.924 9 N -0.575 5.575 10 C 0.439 3.561 11 O -0.617 6.617 12 C 0.061 3.939 13 N -0.541 5.541 14 C 0.057 3.943 15 C -0.109 4.109 16 C -0.102 4.102 17 C -0.091 4.091 18 H 0.062 0.938 19 C 0.119 3.881 20 N -0.282 5.282 21 C -0.032 4.032 22 C -0.072 4.072 23 N -0.322 5.322 24 N -0.130 5.130 25 C 0.066 3.934 26 H 0.277 0.723 27 H 0.397 0.603 28 H 0.072 0.928 29 H 0.113 0.887 30 H 0.055 0.945 31 H 0.043 0.957 32 H 0.040 0.960 33 H 0.074 0.926 34 H 0.048 0.952 35 H 0.089 0.911 36 H 0.150 0.850 37 H 0.115 0.885 38 H 0.237 0.763 39 H 0.214 0.786 40 H 0.065 0.935 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.162 -23.528 4.891 24.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.212 4.212 3 Si 0.814 3.186 4 H -0.201 1.201 5 H -0.196 1.196 6 H -0.195 1.195 7 C -0.460 4.460 8 H 0.094 0.906 9 N -0.213 5.213 10 C 0.227 3.773 11 O -0.503 6.503 12 C -0.070 4.070 13 N -0.266 5.266 14 C -0.070 4.070 15 C -0.146 4.146 16 C -0.140 4.140 17 C -0.111 4.111 18 H 0.081 0.919 19 C -0.001 4.001 20 N -0.076 5.076 21 C -0.184 4.184 22 C -0.230 4.230 23 N -0.187 5.187 24 N -0.109 5.109 25 C -0.062 4.062 26 H 0.087 0.913 27 H 0.230 0.770 28 H 0.090 0.910 29 H 0.131 0.869 30 H 0.073 0.927 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.093 0.907 34 H 0.067 0.933 35 H 0.107 0.893 36 H 0.168 0.832 37 H 0.133 0.867 38 H 0.253 0.747 39 H 0.230 0.770 40 H 0.083 0.917 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.560 -22.452 3.329 22.841 hybrid contribution -0.773 0.602 1.269 1.603 sum -3.333 -21.850 4.599 22.576 Atomic orbital electron populations 1.69669 1.06705 1.29153 1.50607 1.25990 0.96546 1.02259 0.96454 0.84911 0.77964 0.77348 0.78363 1.20056 1.19626 1.19499 1.19645 0.92552 0.84099 1.49661 0.90636 1.41937 1.09309 1.04667 1.65403 1.20897 0.88324 0.86100 0.81985 1.90481 1.15940 1.87801 1.56050 1.21699 0.93445 0.88175 1.03701 1.61307 1.25782 1.02784 1.36700 1.22093 0.95762 0.99758 0.89408 1.21454 0.97367 0.94507 1.01319 1.21544 0.98981 0.95932 0.97498 1.21351 0.97576 0.93049 0.99117 0.91922 1.22438 0.87632 0.83440 1.06582 1.47722 1.22959 1.15664 1.21206 1.24432 1.03385 0.87291 1.03268 1.24248 0.98277 1.03636 0.96808 1.75084 1.22514 1.00396 1.20667 1.78321 1.01214 1.18652 1.12720 1.22085 0.94551 0.86822 1.02709 0.91334 0.76958 0.90988 0.86936 0.92676 0.93942 0.94139 0.90741 0.93286 0.89251 0.83185 0.86670 0.74682 0.76962 0.91677 0.88980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.44 13.05 21.66 0.28 -49.15 16 2 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 3 Si 0.99 43.24 29.55 68.60 2.03 45.27 16 4 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 5 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 6 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 7 C -0.33 -18.81 9.68 84.04 0.81 -17.99 16 8 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16 9 N -0.58 -29.36 5.29 -306.98 -1.62 -30.98 16 10 C 0.44 20.76 7.46 87.66 0.65 21.41 16 11 O -0.62 -34.36 13.92 -3.08 -0.04 -34.40 16 12 C 0.06 1.99 5.45 85.56 0.47 2.46 16 13 N -0.54 -16.51 4.39 -900.93 -3.96 -20.47 16 14 C 0.06 1.79 5.11 86.33 0.44 2.23 16 15 C -0.11 -2.91 6.09 30.65 0.19 -2.72 16 16 C -0.10 -1.94 5.14 30.67 0.16 -1.78 16 17 C -0.09 -1.66 2.40 -10.74 -0.03 -1.69 16 18 H 0.06 1.66 8.01 -2.39 -0.02 1.64 16 19 C 0.12 1.25 5.85 86.38 0.51 1.76 16 20 N -0.28 -4.68 2.94 -347.73 -1.02 -5.70 16 21 C -0.03 -0.36 11.57 83.49 0.97 0.61 16 22 C -0.07 -1.17 12.05 83.73 1.01 -0.16 16 23 N -0.32 -8.53 12.41 -58.26 -0.72 -9.25 16 24 N -0.13 -3.42 12.84 37.02 0.48 -2.95 16 25 C 0.07 1.25 4.74 86.33 0.41 1.66 16 26 H 0.28 13.90 8.31 -92.71 -0.77 13.13 16 27 H 0.40 19.03 7.90 -92.71 -0.73 18.30 16 28 H 0.07 2.03 8.12 -2.39 -0.02 2.01 16 29 H 0.11 3.17 7.98 -2.39 -0.02 3.15 16 30 H 0.05 2.26 5.80 -2.39 -0.01 2.25 16 31 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 34 H 0.05 1.03 7.83 -2.39 -0.02 1.01 16 35 H 0.09 1.19 8.14 -2.38 -0.02 1.17 16 36 H 0.15 0.28 8.07 -2.39 -0.02 0.26 16 37 H 0.12 0.97 8.14 -2.38 -0.02 0.95 16 38 H 0.24 0.07 8.06 -2.91 -0.02 0.04 16 39 H 0.21 1.90 8.06 -2.91 -0.02 1.88 16 40 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 41 H 0.09 1.52 8.01 -2.39 -0.02 1.50 16 Total: -1.00 -79.61 338.91 1.77 -77.84 By element: Atomic # 1 Polarization: 23.93 SS G_CDS: 0.31 Total: 24.24 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: 6.05 Total: 5.56 kcal Atomic # 7 Polarization: -111.93 SS G_CDS: -6.57 Total: -118.50 kcal Atomic # 8 Polarization: -34.36 SS G_CDS: -0.04 Total: -34.40 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -79.61 1.77 -77.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119524641.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.825 kcal (2) G-P(sol) polarization free energy of solvation -79.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds