Wall clock time and date at job start Tue Mar 31 2020 03:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86808 * 119.99917 * 2 1 4 4 H 1.48491 * 109.47156 * 270.00226 * 3 2 1 5 5 H 1.48507 * 109.46698 * 30.00199 * 3 2 1 6 6 H 1.48503 * 109.47311 * 149.99777 * 3 2 1 7 7 C 1.38949 * 120.00336 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99950 * 0.02562 * 7 2 1 9 9 N 1.37100 * 120.00263 * 179.97438 * 7 2 1 10 10 C 1.34776 * 120.00134 * 180.02562 * 9 7 2 11 11 O 1.21295 * 119.99985 * 0.02562 * 10 9 7 12 12 C 1.50697 * 119.99723 * 180.02562 * 10 9 7 13 13 N 1.46900 * 109.46910 * 179.97438 * 12 10 9 14 14 C 1.46850 * 111.00255 * 294.21392 * 13 12 10 15 15 C 1.53035 * 109.52280 * 174.16126 * 14 13 12 16 16 C 1.53123 * 109.31308 * 59.15767 * 15 14 13 17 17 C 1.53119 * 109.15468 * 302.40086 * 16 15 14 18 18 H 1.09001 * 109.50683 * 297.63742 * 17 16 15 19 19 C 1.53000 * 109.50083 * 177.55762 * 17 16 15 20 20 N 1.46496 * 109.47114 * 65.07883 * 19 17 16 21 21 C 1.35314 * 125.86616 * 124.99942 * 20 19 17 22 22 C 1.35358 * 106.17498 * 180.02562 * 21 20 19 23 23 N 1.33767 * 106.49287 * 0.26477 * 22 21 20 24 24 N 1.28632 * 108.88855 * 359.56308 * 23 22 21 25 25 C 1.46844 * 111.00335 * 169.99786 * 13 12 10 26 26 H 0.97001 * 119.99633 * 359.97438 * 1 2 3 27 27 H 0.97003 * 119.99738 * 0.02562 * 9 7 2 28 28 H 1.08998 * 109.47300 * 60.00275 * 12 10 9 29 29 H 1.08999 * 109.47070 * 299.99987 * 12 10 9 30 30 H 1.09003 * 109.45973 * 294.17630 * 14 13 12 31 31 H 1.08993 * 109.46316 * 54.13996 * 14 13 12 32 32 H 1.09006 * 109.49970 * 179.12168 * 15 14 13 33 33 H 1.08998 * 109.50147 * 299.19339 * 15 14 13 34 34 H 1.08996 * 109.55423 * 182.47912 * 16 15 14 35 35 H 1.08997 * 109.49391 * 62.28979 * 16 15 14 36 36 H 1.09006 * 109.47400 * 305.07932 * 19 17 16 37 37 H 1.08998 * 109.47134 * 185.08289 * 19 17 16 38 38 H 1.08004 * 126.91628 * 0.06220 * 21 20 19 39 39 H 1.08002 * 126.74926 * 179.97438 * 22 21 20 40 40 H 1.09009 * 109.46012 * 65.82378 * 25 13 12 41 41 H 1.08994 * 109.45358 * 305.85659 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4455 2.6527 0.7001 6 1 3.5457 1.4403 0.7001 7 6 2.0089 -1.2033 -0.0005 8 1 1.4690 -2.1386 -0.0014 9 7 3.3799 -1.2033 -0.0011 10 6 4.0539 -2.3704 -0.0021 11 8 3.4474 -3.4209 -0.0031 12 6 5.5608 -2.3703 -0.0021 13 7 6.0506 -3.7553 -0.0027 14 6 5.6959 -4.4395 1.2473 15 6 6.0917 -5.9148 1.1529 16 6 7.5985 -6.0198 0.9014 17 6 7.9484 -5.2576 -0.3797 18 1 7.4388 -5.7165 -1.2269 19 6 9.4608 -5.3059 -0.6058 20 7 9.8732 -6.6893 -0.8554 21 6 10.5653 -7.1283 -1.9321 22 6 10.7285 -8.4606 -1.7579 23 7 10.1310 -8.7684 -0.6014 24 7 9.6389 -7.6962 -0.0887 25 6 7.4988 -3.8013 -0.2409 26 1 -0.4849 0.8401 0.0004 27 1 3.8649 -0.3632 -0.0007 28 1 5.9241 -1.8573 0.8883 29 1 5.9241 -1.8557 -0.8916 30 1 6.2251 -3.9740 2.0788 31 1 4.6213 -4.3615 1.4117 32 1 5.8425 -6.4189 2.0867 33 1 5.5519 -6.3844 0.3306 34 1 7.8775 -7.0675 0.7896 35 1 8.1387 -5.5858 1.7427 36 1 9.9728 -4.9282 0.2792 37 1 9.7194 -4.6888 -1.4662 38 1 10.9173 -6.5349 -2.7630 39 1 11.2368 -9.1420 -2.4242 40 1 8.0196 -3.3388 0.5977 41 1 7.7334 -3.2599 -1.1572 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000119524822.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:19:13 Heat of formation + Delta-G solvation = 48.770431 kcal Electronic energy + Delta-G solvation = -23324.810307 eV Core-core repulsion = 19855.210120 eV Total energy + Delta-G solvation = -3469.600187 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -44.11681 -40.80691 -39.47390 -36.46981 -35.83327 -34.07513 -33.68171 -32.31078 -31.87323 -29.17789 -27.69034 -26.35982 -24.07916 -23.82311 -23.26648 -22.09464 -21.22566 -20.75869 -20.15789 -18.44431 -17.70441 -17.42888 -16.78671 -16.43712 -16.31251 -15.86803 -15.59491 -15.41872 -15.23935 -15.04452 -14.90749 -14.53666 -14.32999 -13.88063 -13.78863 -13.45530 -13.09557 -12.92603 -12.67183 -12.59778 -12.40203 -12.20778 -11.97662 -11.84946 -11.74004 -11.51619 -11.35287 -11.21662 -10.95050 -10.31087 -10.22807 -10.20294 -9.16524 -8.40276 -6.01195 0.76632 1.30432 1.36807 1.45517 1.56208 1.71193 1.98549 2.24163 2.63122 3.15121 3.21803 3.53705 3.66916 3.72734 3.91262 4.06153 4.13886 4.21823 4.31789 4.35305 4.40168 4.41975 4.44623 4.50187 4.52863 4.69848 4.76604 4.78991 4.89290 5.02752 5.07448 5.14299 5.27229 5.40001 5.48006 5.54741 5.81149 5.92623 6.06205 6.26617 6.61684 6.90439 7.41934 7.62626 8.00553 8.77652 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.040226 B = 0.002826 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.906396 B = 9904.563641 C =10222.689612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.018 4.018 3 Si 0.968 3.032 4 H -0.256 1.256 5 H -0.277 1.277 6 H -0.229 1.229 7 C -0.327 4.327 8 H 0.052 0.948 9 N -0.593 5.593 10 C 0.449 3.551 11 O -0.608 6.608 12 C 0.057 3.943 13 N -0.540 5.540 14 C 0.056 3.944 15 C -0.108 4.108 16 C -0.116 4.116 17 C -0.088 4.088 18 H 0.065 0.935 19 C 0.119 3.881 20 N -0.286 5.286 21 C -0.034 4.034 22 C -0.072 4.072 23 N -0.324 5.324 24 N -0.119 5.119 25 C 0.066 3.934 26 H 0.278 0.722 27 H 0.390 0.610 28 H 0.079 0.921 29 H 0.128 0.872 30 H 0.040 0.960 31 H 0.053 0.947 32 H 0.066 0.934 33 H 0.042 0.958 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.117 0.883 37 H 0.151 0.849 38 H 0.236 0.764 39 H 0.212 0.788 40 H 0.059 0.941 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.604 -3.122 -3.742 29.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.216 4.216 3 Si 0.787 3.213 4 H -0.180 1.180 5 H -0.203 1.203 6 H -0.152 1.152 7 C -0.456 4.456 8 H 0.070 0.930 9 N -0.235 5.235 10 C 0.237 3.763 11 O -0.492 6.492 12 C -0.074 4.074 13 N -0.265 5.265 14 C -0.071 4.071 15 C -0.146 4.146 16 C -0.154 4.154 17 C -0.108 4.108 18 H 0.083 0.917 19 C -0.001 4.001 20 N -0.080 5.080 21 C -0.186 4.186 22 C -0.230 4.230 23 N -0.189 5.189 24 N -0.099 5.099 25 C -0.061 4.061 26 H 0.088 0.912 27 H 0.226 0.774 28 H 0.097 0.903 29 H 0.146 0.854 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.061 0.939 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.135 0.865 37 H 0.169 0.831 38 H 0.252 0.748 39 H 0.229 0.771 40 H 0.077 0.923 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 27.120 -4.434 -2.780 27.620 hybrid contribution -0.053 1.377 -0.225 1.396 sum 27.067 -3.057 -3.006 27.405 Atomic orbital electron populations 1.69818 1.08255 1.29215 1.50533 1.26161 0.96485 1.02869 0.96132 0.85331 0.79481 0.76474 0.79987 1.18008 1.20266 1.15215 1.18975 0.81612 0.94781 1.50235 0.93002 1.42035 1.05708 1.07634 1.68111 1.21024 0.91114 0.83224 0.80970 1.90534 1.71407 1.32717 1.54532 1.21811 0.89942 0.90929 1.04708 1.61318 1.14678 1.14096 1.36418 1.22098 1.00666 0.94797 0.89588 1.21461 0.96979 0.95118 1.01074 1.21791 0.94539 1.01800 0.97256 1.21324 0.93739 0.96833 0.98928 0.91677 1.22472 0.95014 0.75310 1.07350 1.47774 1.35141 1.10388 1.14668 1.24445 1.01616 0.96953 0.95574 1.24227 1.05479 0.96021 0.97276 1.75079 1.12781 1.20076 1.10930 1.78208 1.21363 0.90486 1.19794 1.22112 0.85779 0.95131 1.03100 0.91214 0.77441 0.90302 0.85395 0.94219 0.92841 0.91539 0.93936 0.90681 0.91107 0.86538 0.83115 0.74780 0.77090 0.92252 0.87587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.75 13.96 21.66 0.30 -56.45 16 2 C -0.02 -1.01 5.50 84.93 0.47 -0.55 16 3 Si 0.97 38.15 27.74 68.60 1.90 40.05 16 4 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 5 H -0.28 -10.95 7.11 99.48 0.71 -10.25 16 6 H -0.23 -7.45 6.52 99.48 0.65 -6.80 16 7 C -0.33 -19.12 10.16 84.04 0.85 -18.27 16 8 H 0.05 3.65 7.39 -2.91 -0.02 3.63 16 9 N -0.59 -27.50 5.09 -306.98 -1.56 -29.06 16 10 C 0.45 19.92 7.46 87.66 0.65 20.57 16 11 O -0.61 -33.71 13.90 -3.08 -0.04 -33.75 16 12 C 0.06 1.62 5.45 85.56 0.47 2.09 16 13 N -0.54 -15.19 4.40 -900.95 -3.96 -19.15 16 14 C 0.06 1.76 5.11 86.32 0.44 2.20 16 15 C -0.11 -3.08 6.09 30.65 0.19 -2.90 16 16 C -0.12 -2.54 4.92 30.68 0.15 -2.39 16 17 C -0.09 -1.48 2.55 -10.74 -0.03 -1.50 16 18 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 19 C 0.12 1.06 5.93 86.38 0.51 1.57 16 20 N -0.29 -4.44 3.44 -347.73 -1.20 -5.64 16 21 C -0.03 -0.38 11.57 83.49 0.97 0.59 16 22 C -0.07 -1.15 12.05 83.73 1.01 -0.14 16 23 N -0.32 -8.19 12.41 -58.25 -0.72 -8.92 16 24 N -0.12 -2.88 10.28 37.02 0.38 -2.50 16 25 C 0.07 1.07 4.74 86.33 0.41 1.48 16 26 H 0.28 15.39 8.31 -92.71 -0.77 14.62 16 27 H 0.39 14.69 5.76 -92.71 -0.53 14.16 16 28 H 0.08 1.84 8.12 -2.39 -0.02 1.82 16 29 H 0.13 2.74 7.99 -2.39 -0.02 2.72 16 30 H 0.04 1.07 8.14 -2.39 -0.02 1.06 16 31 H 0.05 2.22 5.78 -2.39 -0.01 2.20 16 32 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 33 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.07 1.91 5.64 -2.39 -0.01 1.90 16 35 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.12 0.73 8.14 -2.38 -0.02 0.71 16 37 H 0.15 0.10 8.07 -2.39 -0.02 0.08 16 38 H 0.24 0.08 8.06 -2.91 -0.02 0.06 16 39 H 0.21 1.88 8.06 -2.91 -0.02 1.85 16 40 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 41 H 0.11 1.15 8.01 -2.39 -0.02 1.13 16 Total: -1.00 -87.54 331.67 1.64 -85.90 By element: Atomic # 1 Polarization: 26.30 SS G_CDS: 0.45 Total: 26.75 kcal Atomic # 6 Polarization: -3.33 SS G_CDS: 6.09 Total: 2.76 kcal Atomic # 7 Polarization: -114.95 SS G_CDS: -6.76 Total: -121.71 kcal Atomic # 8 Polarization: -33.71 SS G_CDS: -0.04 Total: -33.75 kcal Atomic # 14 Polarization: 38.15 SS G_CDS: 1.90 Total: 40.05 kcal Total: -87.54 1.64 -85.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119524822.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.669 kcal (2) G-P(sol) polarization free energy of solvation -87.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds