Wall clock time and date at job start Tue Mar 31 2020 03:15:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42894 * 114.00095 * 2 1 4 4 C 1.53001 * 109.47011 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.47061 * 64.99778 * 4 3 2 6 6 C 1.37484 * 119.99836 * 180.02562 * 5 4 3 7 7 N 1.37483 * 120.00078 * 359.97438 * 6 5 4 8 8 N 1.30338 * 120.00203 * 180.02562 * 6 5 4 9 9 C 1.46497 * 120.00699 * 173.80079 * 8 6 5 10 10 C 1.50700 * 109.47192 * 114.32926 * 9 8 6 11 11 C 1.38302 * 119.92829 * 90.00949 * 10 9 8 12 12 C 1.38101 * 120.06648 * 180.02562 * 11 10 9 13 13 C 1.38874 * 119.93184 * 359.96792 * 12 11 10 14 14 O 1.35753 * 120.06950 * 180.02562 * 13 12 11 15 15 C 1.34830 * 116.99808 * 5.43528 * 14 13 12 16 16 H 1.07996 * 120.00017 * 354.91605 * 15 14 13 17 17 C 1.38656 * 119.99926 * 174.91067 * 15 14 13 18 18 N 1.31561 * 120.00099 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00012 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47210 * 90.00175 * 19 17 15 21 21 H 1.48499 * 109.47008 * 209.99935 * 19 17 15 22 22 H 1.48494 * 109.47307 * 330.00240 * 19 17 15 23 23 C 1.38881 * 119.86111 * 0.28028 * 13 12 11 24 24 C 1.38100 * 119.93018 * 359.44694 * 23 13 12 25 25 H 1.08994 * 109.47465 * 300.00349 * 1 2 3 26 26 H 1.08999 * 109.46519 * 60.00289 * 1 2 3 27 27 H 1.09003 * 109.47240 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47350 * 59.99677 * 3 2 1 29 29 H 1.09000 * 109.47015 * 299.99569 * 3 2 1 30 30 H 1.09001 * 109.47327 * 305.00275 * 4 3 2 31 31 H 1.09003 * 109.47420 * 185.00077 * 4 3 2 32 32 H 0.96991 * 119.99971 * 0.02562 * 5 4 3 33 33 H 0.96998 * 119.99920 * 184.98121 * 7 6 5 34 34 H 0.96999 * 119.99939 * 4.99001 * 7 6 5 35 35 H 1.09006 * 109.46654 * 354.33370 * 9 8 6 36 36 H 1.08999 * 109.47152 * 234.33608 * 9 8 6 37 37 H 1.08005 * 119.96762 * 359.97438 * 11 10 9 38 38 H 1.08000 * 120.02846 * 179.97438 * 12 11 10 39 39 H 0.96997 * 120.00311 * 180.02562 * 18 17 15 40 40 H 1.08001 * 120.03093 * 179.72201 * 23 13 12 41 41 H 1.07998 * 119.96459 * 180.27470 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9767 0.5638 -1.2509 6 6 5.3158 0.3506 -1.4777 7 7 6.2409 0.7205 -0.5304 8 7 5.7085 -0.2012 -2.5914 9 6 7.1382 -0.3051 -2.8933 10 6 7.5421 -1.7567 -2.9189 11 6 7.4763 -2.4705 -4.1017 12 6 7.8452 -3.8010 -4.1283 13 6 8.2832 -4.4221 -2.9659 14 8 8.6470 -5.7297 -2.9889 15 6 8.6678 -6.3381 -4.1920 16 1 8.3240 -5.8110 -5.0697 17 6 9.1307 -7.6405 -4.3023 18 7 9.5491 -8.2827 -3.2331 19 14 9.1602 -8.4832 -5.9692 20 1 10.4649 -8.2270 -6.6304 21 1 8.9758 -9.9455 -5.7879 22 1 8.0633 -7.9470 -6.8144 23 6 8.3432 -3.7039 -1.7787 24 6 7.9783 -2.3721 -1.7598 25 1 -0.3634 0.5138 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.6886 1.8463 0.8899 29 1 1.6887 1.8463 -0.8900 30 1 3.8508 0.5683 0.8427 31 1 3.9786 2.1764 0.0902 32 1 3.3241 0.3032 -1.9194 33 1 7.1887 0.6371 -0.7194 34 1 5.9459 1.0648 0.3271 35 1 7.7103 0.2178 -2.1267 36 1 7.3378 0.1449 -3.8658 37 1 7.1353 -1.9870 -5.0053 38 1 7.7932 -4.3579 -5.0521 39 1 9.8732 -9.1937 -3.3103 40 1 8.6791 -4.1854 -0.8721 41 1 8.0289 -1.8120 -0.8378 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171043153.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:15:53 Heat of formation + Delta-G solvation = -8.491046 kcal Electronic energy + Delta-G solvation = -22252.206650 eV Core-core repulsion = 18747.830668 eV Total energy + Delta-G solvation = -3504.375982 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.14455 -38.77030 -37.93465 -36.47505 -34.39608 -32.33057 -31.74303 -30.30751 -30.00589 -28.69321 -26.64944 -25.58008 -24.44344 -22.68025 -21.81357 -20.82239 -19.79084 -17.95250 -17.67990 -17.15079 -16.90762 -16.76597 -15.86422 -15.65137 -14.89091 -14.50514 -14.48209 -14.36162 -14.15530 -13.82657 -13.45319 -13.39317 -12.76018 -12.57827 -12.54265 -12.35667 -12.15587 -11.79783 -11.57154 -11.48385 -11.15798 -10.70373 -10.65203 -10.50809 -10.34333 -10.13939 -9.21158 -9.16905 -8.92494 -8.68192 -8.01493 -7.60398 -6.98999 -6.35215 -3.93489 2.36936 2.45277 3.02317 3.14826 3.19790 3.20502 3.24986 3.35756 3.97961 4.05446 4.46122 4.67242 4.71942 4.84088 4.95361 4.99055 5.10616 5.19376 5.32876 5.34323 5.39695 5.47124 5.74146 5.82285 5.89100 6.04751 6.17789 6.36773 6.48008 6.58387 6.70656 6.84397 7.00101 7.07245 7.19451 7.38882 7.44507 7.57179 7.59480 7.98330 8.02390 8.10846 8.82817 9.10940 9.83273 10.83374 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.020252 B = 0.002671 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.218922 B =10482.044107 C =11111.078421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.051 3.949 4 C 0.127 3.873 5 N -0.723 5.723 6 C 0.616 3.384 7 N -0.898 5.898 8 N -0.651 5.651 9 C 0.137 3.863 10 C -0.171 4.171 11 C -0.054 4.054 12 C -0.233 4.233 13 C 0.152 3.848 14 O -0.182 6.182 15 C -0.389 4.389 16 H 0.091 0.909 17 C 0.037 3.963 18 N -0.867 5.867 19 Si 0.940 3.060 20 H -0.274 1.274 21 H -0.278 1.278 22 H -0.268 1.268 23 C -0.193 4.193 24 C -0.070 4.070 25 H 0.041 0.959 26 H 0.042 0.958 27 H 0.088 0.912 28 H 0.065 0.935 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.418 0.582 33 H 0.408 0.592 34 H 0.386 0.614 35 H 0.024 0.976 36 H 0.067 0.933 37 H 0.106 0.894 38 H 0.125 0.875 39 H 0.268 0.732 40 H 0.113 0.887 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.283 21.594 7.178 26.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.303 6.303 3 C -0.026 4.026 4 C 0.002 3.998 5 N -0.369 5.369 6 C 0.250 3.750 7 N -0.458 5.458 8 N -0.393 5.393 9 C 0.007 3.993 10 C -0.173 4.173 11 C -0.073 4.073 12 C -0.253 4.253 13 C 0.099 3.901 14 O -0.086 6.086 15 C -0.465 4.465 16 H 0.109 0.891 17 C -0.166 4.166 18 N -0.502 5.502 19 Si 0.765 3.235 20 H -0.200 1.200 21 H -0.203 1.203 22 H -0.192 1.192 23 C -0.213 4.213 24 C -0.089 4.089 25 H 0.059 0.941 26 H 0.061 0.939 27 H 0.107 0.893 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.255 0.745 33 H 0.242 0.758 34 H 0.214 0.786 35 H 0.042 0.958 36 H 0.085 0.915 37 H 0.125 0.875 38 H 0.143 0.857 39 H 0.078 0.922 40 H 0.132 0.868 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -13.334 20.700 6.740 25.528 hybrid contribution 0.316 0.018 -0.114 0.336 sum -13.018 20.718 6.626 25.350 Atomic orbital electron populations 1.22772 0.80695 1.03176 0.99892 1.87992 1.19930 1.27031 1.95389 1.22722 0.92923 0.85727 1.01273 1.21303 0.92805 0.97961 0.87737 1.43671 1.03144 1.69298 1.20818 1.18884 0.82336 0.87557 0.86187 1.43151 1.08923 1.75727 1.18026 1.72607 1.16355 1.31541 1.18818 1.20249 0.87229 0.92751 0.99081 1.19318 1.08092 0.95863 0.94014 1.20570 0.96616 0.93375 0.96710 1.21160 1.09229 0.95783 0.99107 1.19367 0.92220 0.85176 0.93326 1.83975 1.74992 1.17101 1.32507 1.21323 1.43978 0.96842 0.84398 0.89146 1.25270 0.96259 0.95816 0.99276 1.70045 1.39801 1.11988 1.28384 0.85721 0.78939 0.78502 0.80324 1.19955 1.20345 1.19217 1.20136 1.10263 0.94113 0.96768 1.20388 0.98399 0.93706 0.96366 0.94085 0.93925 0.89347 0.91730 0.92339 0.91454 0.90875 0.74455 0.75780 0.78624 0.95788 0.91464 0.87545 0.85700 0.92176 0.86846 0.88019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.38 -3.41 10.65 -35.23 -0.38 -3.79 16 3 C 0.05 0.30 6.07 37.16 0.23 0.53 16 4 C 0.13 0.86 5.44 -4.04 -0.02 0.83 16 5 N -0.72 -7.51 5.61 -61.79 -0.35 -7.85 16 6 C 0.62 7.93 8.63 -320.09 -2.76 5.17 16 7 N -0.90 -8.73 8.77 30.14 0.26 -8.47 16 8 N -0.65 -10.59 10.60 -62.96 -0.67 -11.26 16 9 C 0.14 2.19 6.40 -5.20 -0.03 2.16 16 10 C -0.17 -3.31 5.47 -104.58 -0.57 -3.88 16 11 C -0.05 -1.12 9.69 -39.61 -0.38 -1.50 16 12 C -0.23 -5.53 9.17 -39.40 -0.36 -5.90 16 13 C 0.15 3.96 6.65 -39.11 -0.26 3.70 16 14 O -0.18 -5.47 9.76 0.04 0.00 -5.47 16 15 C -0.39 -11.39 9.49 30.89 0.29 -11.10 16 16 H 0.09 2.47 5.20 -52.49 -0.27 2.20 16 17 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 18 N -0.87 -26.32 13.67 55.48 0.76 -25.56 16 19 Si 0.94 21.35 29.55 -169.99 -5.02 16.33 16 20 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 21 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 22 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 23 C -0.19 -4.44 9.99 -39.39 -0.39 -4.83 16 24 C -0.07 -1.37 9.69 -39.61 -0.38 -1.76 16 25 H 0.04 0.19 8.14 -51.93 -0.42 -0.24 16 26 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 27 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.48 7.94 -51.93 -0.41 0.07 16 31 H 0.07 0.34 8.06 -51.93 -0.42 -0.08 16 32 H 0.42 4.61 8.59 -40.82 -0.35 4.26 16 33 H 0.41 3.99 6.21 -40.82 -0.25 3.74 16 34 H 0.39 2.69 7.38 -40.82 -0.30 2.38 16 35 H 0.02 0.33 5.39 -51.93 -0.28 0.05 16 36 H 0.07 1.05 8.08 -51.93 -0.42 0.63 16 37 H 0.11 1.98 8.06 -52.48 -0.42 1.55 16 38 H 0.13 2.95 5.64 -52.49 -0.30 2.65 16 39 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 40 H 0.11 2.50 8.06 -52.49 -0.42 2.08 16 41 H 0.10 1.69 8.06 -52.49 -0.42 1.27 16 LS Contribution 348.81 15.07 5.26 5.26 Total: -1.00 -35.40 348.81 -9.29 -44.69 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: -5.52 Total: 10.42 kcal Atomic # 6 Polarization: -10.67 SS G_CDS: -3.64 Total: -14.30 kcal Atomic # 7 Polarization: -53.15 SS G_CDS: 0.01 Total: -53.14 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: -0.37 Total: -9.26 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -35.40 -9.29 -44.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171043153.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.201 kcal (2) G-P(sol) polarization free energy of solvation -35.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds