Wall clock time and date at job start Tue Mar 31 2020 03:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42894 * 114.00095 * 2 1 4 4 C 1.53001 * 109.47011 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.47061 * 64.99778 * 4 3 2 6 6 C 1.37484 * 119.99836 * 180.02562 * 5 4 3 7 7 N 1.37483 * 120.00078 * 359.97438 * 6 5 4 8 8 N 1.30338 * 120.00203 * 180.02562 * 6 5 4 9 9 C 1.46497 * 120.00699 * 173.80079 * 8 6 5 10 10 C 1.50700 * 109.47192 * 114.32926 * 9 8 6 11 11 C 1.38302 * 119.92829 * 90.00949 * 10 9 8 12 12 C 1.38101 * 120.06648 * 180.02562 * 11 10 9 13 13 C 1.38874 * 119.93184 * 359.96792 * 12 11 10 14 14 O 1.35753 * 120.06950 * 180.02562 * 13 12 11 15 15 C 1.34830 * 116.99808 * 5.43528 * 14 13 12 16 16 H 1.07996 * 120.00017 * 354.91605 * 15 14 13 17 17 C 1.38656 * 119.99926 * 174.91067 * 15 14 13 18 18 N 1.31561 * 120.00099 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00012 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47210 * 90.00175 * 19 17 15 21 21 H 1.48499 * 109.47008 * 209.99935 * 19 17 15 22 22 H 1.48494 * 109.47307 * 330.00240 * 19 17 15 23 23 C 1.38881 * 119.86111 * 0.28028 * 13 12 11 24 24 C 1.38100 * 119.93018 * 359.44694 * 23 13 12 25 25 H 1.08994 * 109.47465 * 300.00349 * 1 2 3 26 26 H 1.08999 * 109.46519 * 60.00289 * 1 2 3 27 27 H 1.09003 * 109.47240 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47350 * 59.99677 * 3 2 1 29 29 H 1.09000 * 109.47015 * 299.99569 * 3 2 1 30 30 H 1.09001 * 109.47327 * 305.00275 * 4 3 2 31 31 H 1.09003 * 109.47420 * 185.00077 * 4 3 2 32 32 H 0.96991 * 119.99971 * 0.02562 * 5 4 3 33 33 H 0.96998 * 119.99920 * 184.98121 * 7 6 5 34 34 H 0.96999 * 119.99939 * 4.99001 * 7 6 5 35 35 H 1.09006 * 109.46654 * 354.33370 * 9 8 6 36 36 H 1.08999 * 109.47152 * 234.33608 * 9 8 6 37 37 H 1.08005 * 119.96762 * 359.97438 * 11 10 9 38 38 H 1.08000 * 120.02846 * 179.97438 * 12 11 10 39 39 H 0.96997 * 120.00311 * 180.02562 * 18 17 15 40 40 H 1.08001 * 120.03093 * 179.72201 * 23 13 12 41 41 H 1.07998 * 119.96459 * 180.27470 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9767 0.5638 -1.2509 6 6 5.3158 0.3506 -1.4777 7 7 6.2409 0.7205 -0.5304 8 7 5.7085 -0.2012 -2.5914 9 6 7.1382 -0.3051 -2.8933 10 6 7.5421 -1.7567 -2.9189 11 6 7.4763 -2.4705 -4.1017 12 6 7.8452 -3.8010 -4.1283 13 6 8.2832 -4.4221 -2.9659 14 8 8.6470 -5.7297 -2.9889 15 6 8.6678 -6.3381 -4.1920 16 1 8.3240 -5.8110 -5.0697 17 6 9.1307 -7.6405 -4.3023 18 7 9.5491 -8.2827 -3.2331 19 14 9.1602 -8.4832 -5.9692 20 1 10.4649 -8.2270 -6.6304 21 1 8.9758 -9.9455 -5.7879 22 1 8.0633 -7.9470 -6.8144 23 6 8.3432 -3.7039 -1.7787 24 6 7.9783 -2.3721 -1.7598 25 1 -0.3634 0.5138 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.6886 1.8463 0.8899 29 1 1.6887 1.8463 -0.8900 30 1 3.8508 0.5683 0.8427 31 1 3.9786 2.1764 0.0902 32 1 3.3241 0.3032 -1.9194 33 1 7.1887 0.6371 -0.7194 34 1 5.9459 1.0648 0.3271 35 1 7.7103 0.2178 -2.1267 36 1 7.3378 0.1449 -3.8658 37 1 7.1353 -1.9870 -5.0053 38 1 7.7932 -4.3579 -5.0521 39 1 9.8732 -9.1937 -3.3103 40 1 8.6791 -4.1854 -0.8721 41 1 8.0289 -1.8120 -0.8378 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171043153.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:15:52 Heat of formation + Delta-G solvation = -34.306645 kcal Electronic energy + Delta-G solvation = -22253.326099 eV Core-core repulsion = 18747.830668 eV Total energy + Delta-G solvation = -3505.495430 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.78381 -39.76589 -38.78611 -38.11359 -35.35179 -34.29080 -32.94255 -31.76507 -31.28649 -29.83995 -27.60419 -27.10828 -25.86259 -23.60106 -23.33182 -22.25354 -20.97882 -19.82980 -18.84241 -18.57593 -17.86379 -17.48067 -16.53016 -16.43198 -16.39090 -16.30818 -15.96380 -15.50715 -15.29592 -15.18253 -14.94279 -14.57073 -14.43857 -14.19157 -13.73853 -13.44154 -13.13810 -12.98012 -12.77259 -12.62926 -12.42566 -12.30595 -12.24462 -12.11555 -11.98747 -11.17252 -10.79727 -10.62097 -10.03531 -9.88109 -9.75967 -8.89533 -8.57204 -8.46533 -6.14603 0.61168 0.72213 1.34391 1.44225 1.52389 2.14379 2.18388 2.20267 2.83434 2.89146 3.14281 3.25154 3.53067 3.96944 4.06994 4.17206 4.24452 4.29652 4.41666 4.45470 4.53208 4.59426 4.62126 4.64321 4.75981 4.80331 4.89735 4.91511 5.00251 5.10346 5.17795 5.32715 5.60088 5.72896 5.77070 5.88119 6.03813 6.12809 6.25301 6.25744 6.58566 6.98005 7.19911 7.79436 7.84784 8.76985 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.020252 B = 0.002671 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.218922 B =10482.044107 C =11111.078421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.418 6.418 3 C 0.049 3.951 4 C 0.123 3.877 5 N -0.722 5.722 6 C 0.621 3.379 7 N -0.885 5.885 8 N -0.701 5.701 9 C 0.141 3.859 10 C -0.149 4.149 11 C -0.059 4.059 12 C -0.242 4.242 13 C 0.110 3.890 14 O -0.233 6.233 15 C -0.414 4.414 16 H 0.099 0.901 17 C -0.024 4.024 18 N -0.922 5.922 19 Si 1.020 2.980 20 H -0.262 1.262 21 H -0.269 1.269 22 H -0.255 1.255 23 C -0.204 4.204 24 C -0.062 4.062 25 H 0.056 0.944 26 H 0.050 0.950 27 H 0.083 0.917 28 H 0.089 0.911 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.101 0.899 32 H 0.413 0.587 33 H 0.410 0.590 34 H 0.402 0.598 35 H 0.052 0.948 36 H 0.070 0.930 37 H 0.131 0.869 38 H 0.117 0.883 39 H 0.273 0.727 40 H 0.113 0.887 41 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.417 24.662 7.331 29.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.338 6.338 3 C -0.027 4.027 4 C -0.001 4.001 5 N -0.366 5.366 6 C 0.255 3.745 7 N -0.445 5.445 8 N -0.447 5.447 9 C 0.010 3.990 10 C -0.151 4.151 11 C -0.078 4.078 12 C -0.261 4.261 13 C 0.060 3.940 14 O -0.140 6.140 15 C -0.490 4.490 16 H 0.116 0.884 17 C -0.221 4.221 18 N -0.561 5.561 19 Si 0.839 3.161 20 H -0.186 1.186 21 H -0.194 1.194 22 H -0.179 1.179 23 C -0.223 4.223 24 C -0.081 4.081 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.102 0.898 28 H 0.107 0.893 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.119 0.881 32 H 0.250 0.750 33 H 0.244 0.756 34 H 0.232 0.768 35 H 0.070 0.930 36 H 0.088 0.912 37 H 0.149 0.851 38 H 0.135 0.865 39 H 0.082 0.918 40 H 0.131 0.869 41 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -14.508 23.860 6.960 28.779 hybrid contribution 0.510 -0.553 0.024 0.753 sum -13.998 23.306 6.985 28.070 Atomic orbital electron populations 1.22873 0.79630 1.03348 1.01048 1.87938 1.21324 1.28905 1.95658 1.22863 0.92156 0.84941 1.02789 1.21582 0.93670 0.98931 0.85881 1.43929 1.02214 1.68646 1.21830 1.19055 0.83466 0.86151 0.85788 1.43040 1.08539 1.74789 1.18171 1.72597 1.15780 1.35195 1.21092 1.20196 0.88301 0.89976 1.00511 1.19917 1.04353 0.97840 0.92950 1.20891 0.96094 0.92208 0.98586 1.21242 1.09562 0.97119 0.98173 1.19893 0.94120 0.84705 0.95331 1.83935 1.77700 1.19242 1.33157 1.21816 1.44713 0.97688 0.84819 0.88395 1.26609 0.95372 0.96126 1.03993 1.70188 1.41915 1.12695 1.31280 0.84573 0.79677 0.77242 0.74610 1.18639 1.19377 1.17853 1.20417 1.10455 0.95520 0.95896 1.20774 0.96730 0.92347 0.98220 0.92546 0.93115 0.89806 0.89310 0.91605 0.91620 0.88128 0.75025 0.75551 0.76762 0.93038 0.91151 0.85141 0.86534 0.91826 0.86923 0.84160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 113.37 1.25 1.53 16 2 O -0.42 -6.71 10.65 -148.98 -1.59 -8.30 16 3 C 0.05 0.44 6.07 71.98 0.44 0.88 16 4 C 0.12 1.26 5.44 86.38 0.47 1.73 16 5 N -0.72 -13.09 5.61 -349.40 -1.96 -15.05 16 6 C 0.62 14.08 8.63 260.54 2.25 16.33 16 7 N -0.88 -13.74 8.77 -58.57 -0.51 -14.25 16 8 N -0.70 -20.93 10.60 -353.10 -3.74 -24.68 16 9 C 0.14 4.06 6.40 85.63 0.55 4.60 16 10 C -0.15 -5.44 5.47 -19.84 -0.11 -5.54 16 11 C -0.06 -2.40 9.69 22.25 0.22 -2.18 16 12 C -0.24 -11.74 9.17 22.39 0.21 -11.53 16 13 C 0.11 5.93 6.65 22.58 0.15 6.08 16 14 O -0.23 -14.91 9.76 -22.77 -0.22 -15.13 16 15 C -0.41 -25.48 9.49 67.92 0.64 -24.84 16 16 H 0.10 5.60 5.20 -2.91 -0.02 5.58 16 17 C -0.02 -1.42 5.49 84.83 0.47 -0.95 16 18 N -0.92 -58.64 13.67 21.61 0.30 -58.35 16 19 Si 1.02 44.80 29.55 68.60 2.03 46.82 16 20 H -0.26 -10.85 7.11 99.48 0.71 -10.15 16 21 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 22 H -0.25 -10.50 7.11 99.48 0.71 -9.79 16 23 C -0.20 -9.47 9.99 22.39 0.22 -9.25 16 24 C -0.06 -2.33 9.69 22.25 0.22 -2.12 16 25 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 26 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 27 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 29 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.07 0.73 7.94 -2.39 -0.02 0.71 16 31 H 0.10 0.51 8.06 -2.39 -0.02 0.49 16 32 H 0.41 8.37 8.59 -92.72 -0.80 7.57 16 33 H 0.41 6.25 6.21 -92.71 -0.58 5.67 16 34 H 0.40 3.92 7.38 -92.71 -0.68 3.23 16 35 H 0.05 1.18 5.39 -2.38 -0.01 1.17 16 36 H 0.07 1.98 8.08 -2.39 -0.02 1.96 16 37 H 0.13 4.62 8.06 -2.91 -0.02 4.60 16 38 H 0.12 5.72 5.64 -2.91 -0.02 5.71 16 39 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 40 H 0.11 5.13 8.06 -2.91 -0.02 5.10 16 41 H 0.14 4.14 8.06 -2.91 -0.02 4.12 16 Total: -1.00 -81.49 348.81 0.28 -81.20 By element: Atomic # 1 Polarization: 33.95 SS G_CDS: -0.97 Total: 32.98 kcal Atomic # 6 Polarization: -32.22 SS G_CDS: 6.96 Total: -25.25 kcal Atomic # 7 Polarization: -106.40 SS G_CDS: -5.92 Total: -112.32 kcal Atomic # 8 Polarization: -21.62 SS G_CDS: -1.81 Total: -23.43 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.82 kcal Total: -81.49 0.28 -81.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171043153.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.898 kcal (2) G-P(sol) polarization free energy of solvation -81.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds