Wall clock time and date at job start Tue Mar 31 2020 03:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21274 * 120.00231 * 2 1 4 4 N 1.34779 * 119.99745 * 179.97438 * 2 1 3 5 5 C 1.47426 * 125.65042 * 0.04336 * 4 2 1 6 6 C 1.54908 * 104.83416 * 204.09404 * 5 4 2 7 7 C 1.55159 * 101.57827 * 322.98750 * 6 5 4 8 8 H 1.08994 * 110.87587 * 277.06972 * 7 6 5 9 9 C 1.50699 * 110.71640 * 153.86401 * 7 6 5 10 10 O 1.21281 * 120.00377 * 341.37208 * 9 7 6 11 11 N 1.34780 * 120.00034 * 161.37018 * 9 7 6 12 12 C 1.46497 * 120.00427 * 174.83050 * 11 9 7 13 13 C 1.50701 * 109.46856 * 89.99758 * 12 11 9 14 14 H 1.07997 * 120.00374 * 0.02562 * 13 12 11 15 15 C 1.37883 * 120.00000 * 180.02562 * 13 12 11 16 16 N 1.31508 * 120.00266 * 180.02562 * 15 13 12 17 17 Si 1.86806 * 119.99660 * 0.02562 * 15 13 12 18 18 H 1.48504 * 109.46991 * 269.99570 * 17 15 13 19 19 H 1.48499 * 109.47191 * 29.99640 * 17 15 13 20 20 H 1.48497 * 109.47030 * 150.00053 * 17 15 13 21 21 C 1.46503 * 119.99630 * 354.83109 * 11 9 7 22 22 C 1.53005 * 109.46878 * 274.93976 * 21 11 9 23 23 C 1.47208 * 109.46789 * 180.02562 * 22 21 11 24 24 N 7.79702 * 134.41751 * 230.43896 * 2 1 3 25 25 C 1.47025 * 125.64853 * 179.97438 * 4 2 1 26 26 H 1.08999 * 109.47638 * 240.00081 * 1 2 3 27 27 H 1.09003 * 109.46931 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.47189 * 120.00097 * 1 2 3 29 29 H 1.09004 * 110.36455 * 322.93237 * 5 4 2 30 30 H 1.09000 * 110.36444 * 85.13967 * 5 4 2 31 31 H 1.09001 * 111.00184 * 204.91638 * 6 5 4 32 32 H 1.08995 * 111.00586 * 81.06168 * 6 5 4 33 33 H 1.09001 * 109.47022 * 330.00008 * 12 11 9 34 34 H 1.08991 * 109.47481 * 209.99747 * 12 11 9 35 35 H 0.97006 * 119.99893 * 180.02562 * 16 15 13 36 36 H 1.08997 * 109.47452 * 34.93853 * 21 11 9 37 37 H 1.09003 * 109.47144 * 154.94229 * 21 11 9 38 38 H 1.08998 * 109.47110 * 299.99629 * 22 21 11 39 39 H 1.08996 * 109.47303 * 60.00452 * 22 21 11 40 40 H 1.08997 * 109.87604 * 59.56140 * 25 4 2 41 41 H 1.08998 * 109.87921 * 298.39559 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 1.5730 -2.5104 0.0002 6 6 2.6544 -3.4353 0.6123 7 6 3.9548 -2.8234 0.0275 8 1 4.1411 -3.1968 -0.9794 9 6 5.1299 -3.1100 0.9264 10 8 4.9459 -3.4319 2.0812 11 7 6.3855 -3.0087 0.4471 12 6 7.5291 -3.1760 1.3473 13 6 7.9302 -4.6282 1.3852 14 1 7.3879 -5.3538 0.7972 15 6 8.9897 -5.0304 2.1706 16 7 9.3401 -6.2975 2.2033 17 14 9.9273 -3.7755 3.1882 18 1 11.0514 -3.2285 2.3867 19 1 9.0135 -2.6714 3.5773 20 1 10.4624 -4.4289 4.4097 21 6 6.6067 -2.7312 -0.9743 22 6 6.5701 -4.0427 -1.7616 23 6 6.7930 -3.7639 -3.1898 24 7 6.9640 -3.5470 -4.2935 25 6 3.6440 -1.3120 0.0001 26 1 -0.3634 -0.5138 0.8900 27 1 -0.3633 1.0277 -0.0005 28 1 -0.3633 -0.5138 -0.8900 29 1 0.6733 -2.5197 0.6156 30 1 1.3383 -2.8203 -1.0181 31 1 2.5225 -4.4646 0.2786 32 1 2.6494 -3.3753 1.7006 33 1 7.2531 -2.8490 2.3498 34 1 8.3656 -2.5773 0.9873 35 1 10.0853 -6.5806 2.7562 36 1 5.8250 -2.0657 -1.3406 37 1 7.5790 -2.2561 -1.1048 38 1 7.3518 -4.7082 -1.3955 39 1 5.5979 -4.5178 -1.6313 40 1 4.0642 -0.8312 0.8833 41 1 4.0604 -0.8640 -0.9021 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176128301.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:56 Heat of formation + Delta-G solvation = -39.725273 kcal Electronic energy + Delta-G solvation = -23794.337306 eV Core-core repulsion = 20288.606907 eV Total energy + Delta-G solvation = -3505.730400 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.53588 -39.27188 -37.20198 -36.73411 -35.36771 -32.91800 -32.17009 -30.99185 -30.03221 -29.32621 -27.72396 -24.49147 -23.78307 -22.97281 -21.20116 -19.57748 -18.66942 -17.62146 -17.26098 -17.13398 -16.72912 -16.12151 -15.63495 -15.44710 -14.66675 -14.63642 -14.28524 -14.03198 -13.73540 -13.36598 -13.22267 -12.91071 -12.86641 -12.66119 -12.55734 -12.44840 -12.34411 -12.22383 -11.89535 -11.78910 -11.67024 -11.35371 -11.10492 -10.91068 -10.83929 -10.56656 -10.20419 -10.07576 -9.62363 -9.24955 -8.84681 -8.66964 -8.00232 -6.17103 -4.16829 2.45829 2.69666 2.76339 2.87996 3.08770 3.22313 3.30831 3.34483 3.51374 4.14966 4.25079 4.32975 4.34484 4.69003 4.73637 4.91726 4.97205 5.01206 5.09262 5.10568 5.14328 5.18300 5.19412 5.29994 5.42012 5.55189 5.60912 5.68173 5.80596 5.85296 6.02845 6.11484 6.14797 6.52555 6.83948 7.11350 7.30617 7.50313 7.64185 7.97049 7.98303 8.34616 8.71067 8.84560 9.43040 10.95532 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.014871 B = 0.004579 C = 0.003954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.443584 B = 6113.348591 C = 7080.410619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.524 3.476 3 O -0.547 6.547 4 N -0.619 5.619 5 C 0.099 3.901 6 C -0.117 4.117 7 C -0.129 4.129 8 H 0.105 0.895 9 C 0.521 3.479 10 O -0.522 6.522 11 N -0.591 5.591 12 C 0.214 3.786 13 C -0.532 4.532 14 H 0.079 0.921 15 C 0.075 3.925 16 N -0.894 5.894 17 Si 0.871 3.129 18 H -0.275 1.275 19 H -0.264 1.264 20 H -0.284 1.284 21 C 0.121 3.879 22 C -0.053 4.053 23 C 0.218 3.782 24 N -0.450 5.450 25 C 0.122 3.878 26 H 0.088 0.912 27 H 0.091 0.909 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.091 0.909 32 H 0.097 0.903 33 H 0.042 0.958 34 H 0.029 0.971 35 H 0.265 0.735 36 H 0.074 0.926 37 H 0.091 0.909 38 H 0.134 0.866 39 H 0.106 0.894 40 H 0.075 0.925 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.849 6.849 -5.904 18.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.314 3.686 3 O -0.425 6.425 4 N -0.354 5.354 5 C -0.024 4.024 6 C -0.155 4.155 7 C -0.151 4.151 8 H 0.123 0.877 9 C 0.306 3.694 10 O -0.397 6.397 11 N -0.322 5.322 12 C 0.094 3.906 13 C -0.570 4.570 14 H 0.097 0.903 15 C -0.128 4.128 16 N -0.532 5.532 17 Si 0.698 3.302 18 H -0.201 1.201 19 H -0.188 1.188 20 H -0.210 1.210 21 C -0.005 4.005 22 C -0.095 4.095 23 C -0.100 4.100 24 N -0.127 5.127 25 C -0.001 4.001 26 H 0.107 0.893 27 H 0.110 0.890 28 H 0.106 0.894 29 H 0.099 0.901 30 H 0.091 0.909 31 H 0.109 0.891 32 H 0.115 0.885 33 H 0.060 0.940 34 H 0.047 0.953 35 H 0.075 0.925 36 H 0.092 0.908 37 H 0.109 0.891 38 H 0.152 0.848 39 H 0.124 0.876 40 H 0.093 0.907 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -15.260 7.526 -6.819 18.331 hybrid contribution 0.670 0.157 0.869 1.108 sum -14.591 7.682 -5.950 17.530 Atomic orbital electron populations 1.21894 0.91312 1.05375 1.04216 1.20508 0.90397 0.81941 0.75766 1.90737 1.70868 1.30724 1.50152 1.48559 1.07142 1.06194 1.73523 1.22444 0.97234 0.81580 1.01166 1.22759 0.90994 0.98834 1.02895 1.22516 0.95464 0.96070 1.01035 0.87742 1.19902 0.83472 0.77965 0.88047 1.90705 1.84622 1.45940 1.18418 1.47900 1.06763 1.69567 1.07946 1.19784 0.82791 0.98151 0.89890 1.21286 1.15441 0.91775 1.28487 0.90323 1.24834 0.96828 0.95093 0.96024 1.69876 1.28297 1.15021 1.40015 0.86924 0.80549 0.82148 0.80588 1.20082 1.18841 1.20983 1.21332 1.03483 0.94311 0.81382 1.19999 1.06543 1.01508 0.81419 1.29296 0.92680 0.93023 0.95014 1.81268 1.09688 1.08975 1.12814 1.21749 0.80963 0.94444 1.02920 0.89337 0.88995 0.89437 0.90104 0.90917 0.89060 0.88479 0.93973 0.95313 0.92478 0.90804 0.89079 0.84831 0.87648 0.90702 0.90710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.16 9.33 36.01 0.34 -0.83 16 2 C 0.52 6.18 7.96 -10.98 -0.09 6.10 16 3 O -0.55 -8.96 17.41 5.56 0.10 -8.86 16 4 N -0.62 -6.68 3.33 -170.52 -0.57 -7.25 16 5 C 0.10 0.75 6.69 -2.53 -0.02 0.73 16 6 C -0.12 -1.16 6.35 -24.58 -0.16 -1.32 16 7 C -0.13 -1.48 2.34 -89.94 -0.21 -1.69 16 8 H 0.10 0.95 5.88 -51.93 -0.31 0.64 16 9 C 0.52 8.67 6.72 -10.98 -0.07 8.60 16 10 O -0.52 -11.08 15.36 5.56 0.09 -10.99 16 11 N -0.59 -9.91 2.47 -175.06 -0.43 -10.34 16 12 C 0.21 4.56 4.23 -5.20 -0.02 4.54 16 13 C -0.53 -13.47 9.73 -34.44 -0.34 -13.80 16 14 H 0.08 2.12 7.66 -52.49 -0.40 1.72 16 15 C 0.08 2.02 5.47 -17.82 -0.10 1.93 16 16 N -0.89 -25.77 13.96 55.43 0.77 -25.00 16 17 Si 0.87 20.22 27.47 -169.99 -4.67 15.55 16 18 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 19 H -0.26 -5.98 6.54 56.52 0.37 -5.61 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 C 0.12 1.49 5.04 -4.04 -0.02 1.47 16 22 C -0.05 -0.63 5.82 -29.51 -0.17 -0.80 16 23 C 0.22 2.79 15.44 -20.70 -0.32 2.47 16 24 N -0.45 -6.86 18.55 42.22 0.78 -6.08 16 25 C 0.12 1.46 6.12 -3.06 -0.02 1.45 16 26 H 0.09 0.47 7.85 -51.93 -0.41 0.06 16 27 H 0.09 0.63 8.12 -51.93 -0.42 0.21 16 28 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.08 0.46 7.48 -51.93 -0.39 0.08 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.10 1.20 7.22 -51.93 -0.37 0.82 16 33 H 0.04 1.00 6.55 -51.93 -0.34 0.66 16 34 H 0.03 0.58 7.29 -51.93 -0.38 0.20 16 35 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 36 H 0.07 0.72 5.87 -51.93 -0.30 0.42 16 37 H 0.09 1.09 7.84 -51.93 -0.41 0.68 16 38 H 0.13 1.87 7.53 -51.93 -0.39 1.48 16 39 H 0.11 1.04 7.12 -51.93 -0.37 0.67 16 40 H 0.07 1.07 7.81 -51.93 -0.41 0.66 16 41 H 0.07 0.84 7.55 -51.93 -0.39 0.45 16 LS Contribution 345.02 15.07 5.20 5.20 Total: -1.00 -34.99 345.02 -5.65 -40.64 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: -5.72 Total: -1.70 kcal Atomic # 6 Polarization: 10.04 SS G_CDS: -1.19 Total: 8.84 kcal Atomic # 7 Polarization: -49.23 SS G_CDS: 0.56 Total: -48.67 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: 0.18 Total: -19.86 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -4.67 Total: 15.55 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -34.99 -5.65 -40.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176128301.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.914 kcal (2) G-P(sol) polarization free energy of solvation -34.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds