Wall clock time and date at job start Tue Mar 31 2020 03:00:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21274 * 120.00231 * 2 1 4 4 N 1.34779 * 119.99745 * 179.97438 * 2 1 3 5 5 C 1.47426 * 125.65042 * 0.04336 * 4 2 1 6 6 C 1.54908 * 104.83416 * 204.09404 * 5 4 2 7 7 C 1.55159 * 101.57827 * 322.98750 * 6 5 4 8 8 H 1.08994 * 110.87587 * 277.06972 * 7 6 5 9 9 C 1.50699 * 110.71640 * 153.86401 * 7 6 5 10 10 O 1.21281 * 120.00377 * 341.37208 * 9 7 6 11 11 N 1.34780 * 120.00034 * 161.37018 * 9 7 6 12 12 C 1.46497 * 120.00427 * 174.83050 * 11 9 7 13 13 C 1.50701 * 109.46856 * 89.99758 * 12 11 9 14 14 H 1.07997 * 120.00374 * 0.02562 * 13 12 11 15 15 C 1.37883 * 120.00000 * 180.02562 * 13 12 11 16 16 N 1.31508 * 120.00266 * 180.02562 * 15 13 12 17 17 Si 1.86806 * 119.99660 * 0.02562 * 15 13 12 18 18 H 1.48504 * 109.46991 * 269.99570 * 17 15 13 19 19 H 1.48499 * 109.47191 * 29.99640 * 17 15 13 20 20 H 1.48497 * 109.47030 * 150.00053 * 17 15 13 21 21 C 1.46503 * 119.99630 * 354.83109 * 11 9 7 22 22 C 1.53005 * 109.46878 * 274.93976 * 21 11 9 23 23 C 1.47208 * 109.46789 * 180.02562 * 22 21 11 24 24 N 7.79702 * 134.41751 * 230.43896 * 2 1 3 25 25 C 1.47025 * 125.64853 * 179.97438 * 4 2 1 26 26 H 1.08999 * 109.47638 * 240.00081 * 1 2 3 27 27 H 1.09003 * 109.46931 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.47189 * 120.00097 * 1 2 3 29 29 H 1.09004 * 110.36455 * 322.93237 * 5 4 2 30 30 H 1.09000 * 110.36444 * 85.13967 * 5 4 2 31 31 H 1.09001 * 111.00184 * 204.91638 * 6 5 4 32 32 H 1.08995 * 111.00586 * 81.06168 * 6 5 4 33 33 H 1.09001 * 109.47022 * 330.00008 * 12 11 9 34 34 H 1.08991 * 109.47481 * 209.99747 * 12 11 9 35 35 H 0.97006 * 119.99893 * 180.02562 * 16 15 13 36 36 H 1.08997 * 109.47452 * 34.93853 * 21 11 9 37 37 H 1.09003 * 109.47144 * 154.94229 * 21 11 9 38 38 H 1.08998 * 109.47110 * 299.99629 * 22 21 11 39 39 H 1.08996 * 109.47303 * 60.00452 * 22 21 11 40 40 H 1.08997 * 109.87604 * 59.56140 * 25 4 2 41 41 H 1.08998 * 109.87921 * 298.39559 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 1.5730 -2.5104 0.0002 6 6 2.6544 -3.4353 0.6123 7 6 3.9548 -2.8234 0.0275 8 1 4.1411 -3.1968 -0.9794 9 6 5.1299 -3.1100 0.9264 10 8 4.9459 -3.4319 2.0812 11 7 6.3855 -3.0087 0.4471 12 6 7.5291 -3.1760 1.3473 13 6 7.9302 -4.6282 1.3852 14 1 7.3879 -5.3538 0.7972 15 6 8.9897 -5.0304 2.1706 16 7 9.3401 -6.2975 2.2033 17 14 9.9273 -3.7755 3.1882 18 1 11.0514 -3.2285 2.3867 19 1 9.0135 -2.6714 3.5773 20 1 10.4624 -4.4289 4.4097 21 6 6.6067 -2.7312 -0.9743 22 6 6.5701 -4.0427 -1.7616 23 6 6.7930 -3.7639 -3.1898 24 7 6.9640 -3.5470 -4.2935 25 6 3.6440 -1.3120 0.0001 26 1 -0.3634 -0.5138 0.8900 27 1 -0.3633 1.0277 -0.0005 28 1 -0.3633 -0.5138 -0.8900 29 1 0.6733 -2.5197 0.6156 30 1 1.3383 -2.8203 -1.0181 31 1 2.5225 -4.4646 0.2786 32 1 2.6494 -3.3753 1.7006 33 1 7.2531 -2.8490 2.3498 34 1 8.3656 -2.5773 0.9873 35 1 10.0853 -6.5806 2.7562 36 1 5.8250 -2.0657 -1.3406 37 1 7.5790 -2.2561 -1.1048 38 1 7.3518 -4.7082 -1.3955 39 1 5.5979 -4.5178 -1.6313 40 1 4.0642 -0.8312 0.8833 41 1 4.0604 -0.8640 -0.9021 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176128301.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:55 Heat of formation + Delta-G solvation = -64.260267 kcal Electronic energy + Delta-G solvation = -23795.401224 eV Core-core repulsion = 20288.606907 eV Total energy + Delta-G solvation = -3506.794317 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.58022 -40.39694 -38.22037 -37.88205 -36.72365 -34.76485 -33.22691 -32.28005 -30.75230 -30.40542 -29.11186 -25.60319 -24.99295 -24.20988 -22.38764 -20.40025 -19.86483 -19.16879 -18.39000 -18.23632 -18.00402 -17.23022 -16.85570 -16.34558 -16.18768 -15.81040 -15.45953 -15.29796 -14.74452 -14.60654 -14.34817 -14.21321 -13.84403 -13.73332 -13.60654 -13.54603 -13.43741 -13.23974 -12.98941 -12.94198 -12.83035 -12.53646 -12.40323 -12.26222 -12.00608 -11.87098 -11.73357 -11.57328 -11.02169 -10.72788 -10.64900 -9.70933 -9.49692 -8.24582 -6.26654 1.36925 1.41846 1.49841 1.56526 1.61952 1.78114 1.82931 2.00666 2.28715 2.37605 3.07921 3.11811 3.40862 3.50978 3.75389 3.92442 3.96541 4.13715 4.21669 4.25410 4.36522 4.48520 4.52214 4.63006 4.65506 4.77384 4.78472 4.85062 4.89158 5.00539 5.04424 5.12217 5.13325 5.25255 5.31987 5.53157 5.64471 6.31941 6.51524 6.59133 6.65201 6.76980 7.12258 7.30148 7.42768 8.90889 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.014871 B = 0.004579 C = 0.003954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.443584 B = 6113.348591 C = 7080.410619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.514 3.486 3 O -0.606 6.606 4 N -0.620 5.620 5 C 0.103 3.897 6 C -0.119 4.119 7 C -0.116 4.116 8 H 0.140 0.860 9 C 0.515 3.485 10 O -0.576 6.576 11 N -0.594 5.594 12 C 0.220 3.780 13 C -0.521 4.521 14 H 0.053 0.947 15 C 0.017 3.983 16 N -0.942 5.942 17 Si 0.930 3.070 18 H -0.258 1.258 19 H -0.257 1.257 20 H -0.290 1.290 21 C 0.115 3.885 22 C -0.042 4.042 23 C 0.246 3.754 24 N -0.487 5.487 25 C 0.122 3.878 26 H 0.109 0.891 27 H 0.089 0.911 28 H 0.117 0.883 29 H 0.106 0.894 30 H 0.107 0.893 31 H 0.112 0.888 32 H 0.066 0.934 33 H 0.018 0.982 34 H 0.050 0.950 35 H 0.265 0.735 36 H 0.108 0.892 37 H 0.097 0.903 38 H 0.111 0.889 39 H 0.131 0.869 40 H 0.041 0.959 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.852 7.622 -7.460 20.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.306 3.694 3 O -0.487 6.487 4 N -0.354 5.354 5 C -0.018 4.018 6 C -0.157 4.157 7 C -0.137 4.137 8 H 0.158 0.842 9 C 0.303 3.697 10 O -0.455 6.455 11 N -0.324 5.324 12 C 0.097 3.903 13 C -0.560 4.560 14 H 0.071 0.929 15 C -0.181 4.181 16 N -0.583 5.583 17 Si 0.755 3.245 18 H -0.182 1.182 19 H -0.182 1.182 20 H -0.216 1.216 21 C -0.009 4.009 22 C -0.083 4.083 23 C -0.071 4.071 24 N -0.165 5.165 25 C -0.002 4.002 26 H 0.128 0.872 27 H 0.108 0.892 28 H 0.135 0.865 29 H 0.124 0.876 30 H 0.125 0.875 31 H 0.130 0.870 32 H 0.085 0.915 33 H 0.036 0.964 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.126 0.874 37 H 0.115 0.885 38 H 0.129 0.871 39 H 0.149 0.851 40 H 0.060 0.940 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -17.289 8.292 -8.424 20.944 hybrid contribution 1.250 -0.137 1.361 1.853 sum -16.039 8.155 -7.063 19.330 Atomic orbital electron populations 1.21923 0.87235 1.06109 1.06538 1.21463 0.92304 0.81175 0.74437 1.90708 1.72330 1.32779 1.52928 1.48710 1.06616 1.07428 1.72652 1.22678 0.96807 0.78896 1.03419 1.22800 0.90962 1.00676 1.01242 1.22495 0.93652 0.96129 1.01435 0.84216 1.20824 0.84455 0.76366 0.88020 1.90679 1.85489 1.48295 1.21063 1.47887 1.05853 1.69308 1.09325 1.19451 0.84983 0.95637 0.90193 1.21571 1.14190 0.93424 1.26818 0.92924 1.25643 0.98276 0.96688 0.97535 1.70016 1.29468 1.17095 1.41711 0.85973 0.79689 0.79930 0.78944 1.18236 1.18151 1.21624 1.21613 1.05322 0.95177 0.78771 1.19887 1.07162 1.00823 0.80448 1.29205 0.91439 0.91812 0.94644 1.81314 1.10994 1.10237 1.13963 1.21644 0.82321 0.94274 1.01922 0.87249 0.89233 0.86500 0.87611 0.87516 0.86966 0.91536 0.96393 0.93256 0.92643 0.87360 0.88451 0.87100 0.85095 0.94032 0.89607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.65 9.33 71.24 0.66 -0.99 16 2 C 0.51 11.16 7.96 87.66 0.70 11.86 16 3 O -0.61 -19.73 17.41 -3.01 -0.05 -19.78 16 4 N -0.62 -11.79 3.33 -811.79 -2.70 -14.49 16 5 C 0.10 1.13 6.69 86.85 0.58 1.71 16 6 C -0.12 -2.06 6.35 31.99 0.20 -1.85 16 7 C -0.12 -2.38 2.34 -10.35 -0.02 -2.41 16 8 H 0.14 1.90 5.88 -2.39 -0.01 1.88 16 9 C 0.52 16.90 6.72 87.66 0.59 17.49 16 10 O -0.58 -25.13 15.36 -3.03 -0.05 -25.17 16 11 N -0.59 -19.41 2.47 -826.15 -2.04 -21.45 16 12 C 0.22 9.33 4.23 85.63 0.36 9.69 16 13 C -0.52 -26.85 9.73 25.60 0.25 -26.60 16 14 H 0.05 2.92 7.66 -2.91 -0.02 2.90 16 15 C 0.02 0.92 5.47 84.66 0.46 1.38 16 16 N -0.94 -55.80 13.96 21.45 0.30 -55.50 16 17 Si 0.93 42.03 27.47 68.60 1.88 43.91 16 18 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 19 H -0.26 -11.25 6.54 99.48 0.65 -10.60 16 20 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 21 C 0.12 2.57 5.04 86.38 0.44 3.01 16 22 C -0.04 -0.89 5.82 28.79 0.17 -0.72 16 23 C 0.25 5.73 15.44 89.42 1.38 7.11 16 24 N -0.49 -13.93 18.55 20.03 0.37 -13.55 16 25 C 0.12 2.72 6.12 86.73 0.53 3.26 16 26 H 0.11 0.71 7.85 -2.39 -0.02 0.69 16 27 H 0.09 1.01 8.12 -2.39 -0.02 0.99 16 28 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.11 0.70 7.48 -2.38 -0.02 0.68 16 30 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.07 1.60 7.22 -2.39 -0.02 1.59 16 33 H 0.02 0.86 6.55 -2.39 -0.02 0.85 16 34 H 0.05 1.91 7.29 -2.39 -0.02 1.89 16 35 H 0.26 14.84 8.31 -92.70 -0.77 14.07 16 36 H 0.11 1.73 5.87 -2.39 -0.01 1.71 16 37 H 0.10 2.10 7.84 -2.39 -0.02 2.08 16 38 H 0.11 3.01 7.53 -2.39 -0.02 3.00 16 39 H 0.13 2.13 7.12 -2.39 -0.02 2.11 16 40 H 0.04 1.20 7.81 -2.39 -0.02 1.18 16 41 H 0.09 1.71 7.55 -2.39 -0.02 1.70 16 Total: -1.00 -81.57 345.02 5.01 -76.56 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: 0.99 Total: 6.53 kcal Atomic # 6 Polarization: 16.63 SS G_CDS: 6.30 Total: 22.93 kcal Atomic # 7 Polarization: -100.92 SS G_CDS: -4.07 Total: -104.99 kcal Atomic # 8 Polarization: -44.85 SS G_CDS: -0.10 Total: -44.95 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 1.88 Total: 43.91 kcal Total: -81.57 5.01 -76.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176128301.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.304 kcal (2) G-P(sol) polarization free energy of solvation -81.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds