Wall clock time and date at job start Tue Mar 31 2020 03:00:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21285 * 120.00128 * 2 1 4 4 N 1.34772 * 120.00059 * 179.97438 * 2 1 3 5 5 C 1.47022 * 125.65013 * 359.95870 * 4 2 1 6 6 C 1.54327 * 107.27255 * 181.09600 * 5 4 2 7 7 C 1.55162 * 102.94042 * 22.19544 * 6 5 4 8 8 H 1.08991 * 111.03596 * 82.58676 * 7 6 5 9 9 C 1.50699 * 111.00076 * 206.42579 * 7 6 5 10 10 O 1.21284 * 120.00161 * 6.56143 * 9 7 6 11 11 N 1.34776 * 120.00101 * 186.56839 * 9 7 6 12 12 C 1.46498 * 119.99756 * 5.03309 * 11 9 7 13 13 C 1.50700 * 109.47463 * 96.75421 * 12 11 9 14 14 H 1.08007 * 119.99551 * 359.97438 * 13 12 11 15 15 C 1.37868 * 120.00254 * 180.02562 * 13 12 11 16 16 N 1.31515 * 120.00512 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99904 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47217 * 60.00072 * 17 15 13 19 19 H 1.48508 * 109.47171 * 179.97438 * 17 15 13 20 20 H 1.48495 * 109.47469 * 299.99705 * 17 15 13 21 21 C 1.46499 * 120.00117 * 185.03554 * 11 9 7 22 22 C 1.53000 * 109.47008 * 84.68628 * 21 11 9 23 23 C 1.47201 * 109.46937 * 179.97438 * 22 21 11 24 24 N 9.61180 * 156.49794 * 212.36903 * 2 1 3 25 25 C 1.47428 * 125.64789 * 180.02562 * 4 2 1 26 26 H 1.08992 * 109.47053 * 240.00013 * 1 2 3 27 27 H 1.08998 * 109.47006 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.46579 * 120.00071 * 1 2 3 29 29 H 1.09000 * 109.88225 * 300.51327 * 5 4 2 30 30 H 1.08996 * 109.88070 * 61.52140 * 5 4 2 31 31 H 1.08994 * 110.71837 * 263.83116 * 6 5 4 32 32 H 1.09001 * 110.71942 * 140.55590 * 6 5 4 33 33 H 1.09004 * 109.47103 * 216.75507 * 12 11 9 34 34 H 1.09005 * 109.47095 * 336.75246 * 12 11 9 35 35 H 0.97001 * 120.00340 * 179.97438 * 16 15 13 36 36 H 1.09002 * 109.46700 * 204.68260 * 21 11 9 37 37 H 1.09000 * 109.47166 * 324.68419 * 21 11 9 38 38 H 1.08997 * 109.47130 * 299.99879 * 22 21 11 39 39 H 1.09000 * 109.47328 * 59.99890 * 22 21 11 40 40 H 1.09004 * 110.36746 * 36.99732 * 25 4 2 41 41 H 1.09004 * 110.36546 * 274.67454 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.5747 -2.5066 0.0020 6 6 2.7282 -3.5315 0.0303 7 6 3.9082 -2.7106 0.6143 8 1 3.8592 -2.6750 1.7026 9 6 5.2318 -3.2648 0.1538 10 8 5.2632 -4.1540 -0.6703 11 7 6.3806 -2.7723 0.6579 12 6 6.3419 -1.7770 1.7322 13 6 6.5182 -2.4653 3.0613 14 1 6.6460 -3.5370 3.1016 15 6 6.5155 -1.7270 4.2256 16 7 6.3595 -0.4221 4.1766 17 14 6.7334 -2.5803 5.8730 18 1 8.0411 -3.2834 5.8972 19 1 6.6942 -1.5714 6.9621 20 1 5.6387 -3.5642 6.0696 21 6 7.6681 -3.2322 0.1315 22 6 8.0295 -2.4197 -1.1136 23 6 9.3234 -2.8813 -1.6422 24 7 10.3215 -3.2374 -2.0521 25 6 3.6480 -1.3122 0.0011 26 1 -0.3633 -0.5138 0.8899 27 1 -0.3633 1.0277 -0.0005 28 1 -0.3632 -0.5139 -0.8900 29 1 0.9483 -2.6290 0.8855 30 1 0.9761 -2.6435 -0.8985 31 1 2.9606 -3.8783 -0.9765 32 1 2.4826 -4.3706 0.6813 33 1 7.1454 -1.0548 1.5876 34 1 5.3820 -1.2609 1.7149 35 1 6.3572 0.0973 4.9959 36 1 8.4395 -3.0976 0.8897 37 1 7.5971 -4.2876 -0.1314 38 1 7.2580 -2.5541 -1.8718 39 1 8.1005 -1.3642 -0.8507 40 1 4.1056 -0.5372 0.6161 41 1 4.0341 -1.2669 -1.0172 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176128314.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:58 Heat of formation + Delta-G solvation = -47.897956 kcal Electronic energy + Delta-G solvation = -23878.430993 eV Core-core repulsion = 20372.346200 eV Total energy + Delta-G solvation = -3506.084794 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.29131 -39.12175 -37.08624 -36.51020 -35.29712 -32.97681 -32.16747 -31.06540 -29.75491 -28.65459 -27.27571 -24.55622 -23.56891 -23.00014 -21.29029 -19.31957 -18.35766 -17.56719 -17.01788 -16.93206 -16.47294 -15.81210 -15.48113 -15.19648 -14.71353 -14.59076 -14.39726 -13.94682 -13.46022 -13.33003 -13.13212 -12.74731 -12.61553 -12.54928 -12.38970 -12.30047 -12.16342 -12.02335 -11.73703 -11.51128 -11.42622 -11.11041 -11.00114 -10.81728 -10.71193 -10.58680 -10.22637 -9.89084 -9.81619 -9.28402 -8.66070 -8.55837 -7.98461 -6.26014 -4.34647 2.71033 2.79496 2.93284 2.99379 3.15351 3.19340 3.25767 3.28621 3.62462 4.25959 4.32365 4.49867 4.62222 4.93320 5.00636 5.07717 5.16231 5.20077 5.28834 5.32938 5.35861 5.39321 5.49869 5.63443 5.64484 5.75632 5.90868 6.00086 6.04693 6.11691 6.22329 6.27631 6.40802 6.56939 7.06291 7.32520 7.58880 7.66417 7.69267 7.93246 8.10943 8.24087 8.63005 8.79050 9.33989 10.80501 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.009070 B = 0.006188 C = 0.004338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3086.467979 B = 4523.615757 C = 6453.533665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.524 3.476 3 O -0.544 6.544 4 N -0.618 5.618 5 C 0.101 3.899 6 C -0.115 4.115 7 C -0.120 4.120 8 H 0.122 0.878 9 C 0.530 3.470 10 O -0.565 6.565 11 N -0.591 5.591 12 C 0.230 3.770 13 C -0.546 4.546 14 H 0.062 0.938 15 C 0.068 3.932 16 N -0.886 5.886 17 Si 0.896 3.104 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.276 1.276 21 C 0.127 3.873 22 C -0.046 4.046 23 C 0.221 3.779 24 N -0.450 5.450 25 C 0.120 3.880 26 H 0.087 0.913 27 H 0.090 0.910 28 H 0.085 0.915 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.038 0.962 34 H 0.048 0.952 35 H 0.267 0.733 36 H 0.092 0.908 37 H 0.080 0.920 38 H 0.108 0.892 39 H 0.112 0.888 40 H 0.096 0.904 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.818 -2.413 -6.847 13.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.313 3.687 3 O -0.421 6.421 4 N -0.353 5.353 5 C -0.022 4.022 6 C -0.153 4.153 7 C -0.142 4.142 8 H 0.140 0.860 9 C 0.318 3.682 10 O -0.445 6.445 11 N -0.321 5.321 12 C 0.111 3.889 13 C -0.584 4.584 14 H 0.080 0.920 15 C -0.136 4.136 16 N -0.524 5.524 17 Si 0.723 3.277 18 H -0.201 1.201 19 H -0.211 1.211 20 H -0.201 1.201 21 C 0.001 3.999 22 C -0.087 4.087 23 C -0.097 4.097 24 N -0.127 5.127 25 C -0.003 4.003 26 H 0.105 0.895 27 H 0.109 0.891 28 H 0.103 0.897 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.109 0.891 32 H 0.104 0.896 33 H 0.056 0.944 34 H 0.066 0.934 35 H 0.077 0.923 36 H 0.110 0.890 37 H 0.098 0.902 38 H 0.126 0.874 39 H 0.130 0.870 40 H 0.114 0.886 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.039 -2.556 -7.749 12.177 hybrid contribution -0.248 -0.249 1.376 1.420 sum -9.286 -2.804 -6.372 11.606 Atomic orbital electron populations 1.21883 0.91631 1.05194 1.04030 1.20447 0.90277 0.82073 0.75918 1.90749 1.70787 1.30599 1.49965 1.48530 1.07480 1.05866 1.73456 1.22102 0.96606 0.81846 1.01607 1.22557 0.92396 0.96914 1.03403 1.22453 0.92837 0.95198 1.03715 0.86048 1.20040 0.85476 0.81973 0.80728 1.90616 1.87727 1.30990 1.35172 1.48196 1.03810 1.43131 1.36933 1.19660 0.99352 0.86461 0.83428 1.21407 1.51919 0.94397 0.90680 0.92008 1.24927 0.94623 0.94772 0.99313 1.69901 1.48433 1.05131 1.28905 0.86586 0.78937 0.79228 0.82909 1.20094 1.21125 1.20112 1.21110 0.86992 0.98173 0.93611 1.19779 0.87107 1.02382 0.99467 1.29093 0.94520 0.93005 0.93033 1.81187 1.12241 1.09509 1.09789 1.22167 0.80509 0.96577 1.01032 0.89459 0.89109 0.89659 0.91191 0.91266 0.89123 0.89644 0.94377 0.93393 0.92290 0.88957 0.90172 0.87385 0.86982 0.88611 0.91429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.51 9.51 36.01 0.34 -1.16 16 2 C 0.52 7.47 7.96 -10.99 -0.09 7.38 16 3 O -0.54 -10.31 17.34 5.55 0.10 -10.21 16 4 N -0.62 -8.32 3.33 -170.52 -0.57 -8.88 16 5 C 0.10 1.02 6.49 -3.06 -0.02 1.00 16 6 C -0.11 -1.36 6.14 -24.89 -0.15 -1.51 16 7 C -0.12 -1.82 2.36 -89.63 -0.21 -2.03 16 8 H 0.12 2.05 7.50 -51.93 -0.39 1.66 16 9 C 0.53 9.06 6.94 -10.99 -0.08 8.98 16 10 O -0.56 -10.42 15.32 5.55 0.09 -10.34 16 11 N -0.59 -10.34 2.47 -175.06 -0.43 -10.77 16 12 C 0.23 4.77 4.92 -5.19 -0.03 4.75 16 13 C -0.55 -12.99 9.37 -34.44 -0.32 -13.31 16 14 H 0.06 1.49 7.81 -52.48 -0.41 1.08 16 15 C 0.07 1.69 5.46 -17.82 -0.10 1.59 16 16 N -0.89 -23.29 13.29 55.43 0.74 -22.56 16 17 Si 0.90 19.67 29.54 -169.99 -5.02 14.65 16 18 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 19 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 20 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 21 C 0.13 1.94 5.37 -4.04 -0.02 1.91 16 22 C -0.05 -0.58 5.99 -29.52 -0.18 -0.75 16 23 C 0.22 3.14 15.43 -20.75 -0.32 2.82 16 24 N -0.45 -7.45 18.54 42.16 0.78 -6.67 16 25 C 0.12 1.81 5.96 -2.54 -0.02 1.80 16 26 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.09 0.80 8.12 -51.93 -0.42 0.38 16 28 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.09 1.13 7.29 -51.93 -0.38 0.75 16 32 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.04 0.83 8.12 -51.93 -0.42 0.41 16 34 H 0.05 1.03 4.53 -51.93 -0.24 0.79 16 35 H 0.27 6.79 8.31 -40.82 -0.34 6.46 16 36 H 0.09 1.44 8.03 -51.93 -0.42 1.03 16 37 H 0.08 1.25 7.52 -51.93 -0.39 0.86 16 38 H 0.11 1.29 8.14 -51.93 -0.42 0.86 16 39 H 0.11 1.28 8.14 -51.93 -0.42 0.86 16 40 H 0.10 1.69 6.51 -51.93 -0.34 1.35 16 41 H 0.07 0.99 8.03 -51.93 -0.42 0.57 16 LS Contribution 351.80 15.07 5.30 5.30 Total: -1.00 -30.80 351.80 -6.12 -36.92 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -5.91 Total: 1.10 kcal Atomic # 6 Polarization: 12.65 SS G_CDS: -1.19 Total: 11.46 kcal Atomic # 7 Polarization: -49.40 SS G_CDS: 0.52 Total: -48.88 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: 0.18 Total: -20.55 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.02 Total: 14.65 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.80 -6.12 -36.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176128314.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.980 kcal (2) G-P(sol) polarization free energy of solvation -30.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds