Wall clock time and date at job start Tue Mar 31 2020 03:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86803 * 120.00156 * 2 1 4 4 H 1.48499 * 109.46834 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46893 * 300.00363 * 3 2 1 6 6 H 1.48502 * 109.46882 * 60.00232 * 3 2 1 7 7 C 1.38946 * 119.99990 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00395 * 180.02562 * 7 2 1 9 9 N 1.37105 * 119.99950 * 359.97438 * 7 2 1 10 10 C 1.34779 * 119.99867 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00284 * 0.02562 * 10 9 7 12 12 C 1.50697 * 119.99759 * 180.02562 * 10 9 7 13 13 N 1.46900 * 109.47237 * 173.73332 * 12 10 9 14 14 C 1.46845 * 111.00126 * 169.39888 * 13 12 10 15 15 C 1.53042 * 109.51991 * 185.83890 * 14 13 12 16 16 C 1.53108 * 109.28196 * 300.82034 * 15 14 13 17 17 C 1.53002 * 109.52692 * 177.56315 * 16 15 14 18 18 N 1.46500 * 109.47007 * 65.31572 * 17 16 15 19 19 C 1.34423 * 126.82051 * 125.00849 * 18 17 16 20 20 N 1.30828 * 108.07633 * 179.97438 * 19 18 17 21 21 C 1.33242 * 109.82973 * 359.97438 * 20 19 18 22 22 N 1.30707 * 108.94432 * 359.75060 * 21 20 19 23 23 C 1.53127 * 109.16238 * 57.65720 * 16 15 14 24 24 C 1.46852 * 111.00118 * 293.61170 * 13 12 10 25 25 H 0.97002 * 120.00090 * 359.97438 * 1 2 3 26 26 H 0.96992 * 119.99644 * 0.02562 * 9 7 2 27 27 H 1.08996 * 109.46989 * 293.73073 * 12 10 9 28 28 H 1.08994 * 109.47105 * 53.73252 * 12 10 9 29 29 H 1.08998 * 109.46555 * 305.85433 * 14 13 12 30 30 H 1.08993 * 109.45955 * 65.82786 * 14 13 12 31 31 H 1.09005 * 109.49799 * 180.87612 * 15 14 13 32 32 H 1.09001 * 109.50127 * 60.76638 * 15 14 13 33 33 H 1.09003 * 109.52716 * 297.75527 * 16 15 14 34 34 H 1.09001 * 109.47545 * 185.32319 * 17 16 15 35 35 H 1.09001 * 109.46490 * 305.31875 * 17 16 15 36 36 H 1.08005 * 125.96317 * 359.97438 * 19 18 17 37 37 H 1.08003 * 125.52332 * 180.02562 * 21 20 19 38 38 H 1.08994 * 109.50293 * 182.40848 * 23 16 15 39 39 H 1.08998 * 109.50093 * 62.28250 * 23 16 15 40 40 H 1.08992 * 109.46257 * 294.17720 * 24 13 12 41 41 H 1.09001 * 109.46118 * 54.14126 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3463 -0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8894 2.3964 1.2126 7 6 2.0088 -1.2033 -0.0005 8 1 3.0888 -1.2034 -0.0001 9 7 1.3232 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2101 -3.5579 -0.0001 12 6 1.2436 -4.8629 -0.0011 13 7 2.1911 -5.9754 -0.1522 14 6 1.5323 -7.2647 0.0928 15 6 2.5754 -8.3843 0.0706 16 6 3.2738 -8.3976 -1.2918 17 6 4.3598 -9.4754 -1.2993 18 7 3.7378 -10.7962 -1.1777 19 6 3.8944 -11.8401 -2.0100 20 7 3.1741 -12.8332 -1.5555 21 6 2.5467 -12.4630 -0.4398 22 7 2.8649 -11.2255 -0.1648 23 6 3.9105 -7.0280 -1.5437 24 6 2.8287 -5.9477 -1.4748 25 1 -0.4850 0.8401 0.0004 26 1 0.3533 -2.3906 -0.0005 27 1 0.7035 -4.9710 0.9394 28 1 0.5359 -4.8734 -0.8299 29 1 1.0431 -7.2433 1.0667 30 1 0.7886 -7.4457 -0.6831 31 1 2.0839 -9.3429 0.2371 32 1 3.3118 -8.2112 0.8554 33 1 2.5440 -8.6093 -2.0733 34 1 4.9188 -9.4216 -2.2335 35 1 5.0373 -9.3142 -0.4608 36 1 4.5079 -11.8563 -2.8987 37 1 1.8863 -13.0862 0.1450 38 1 4.3727 -7.0175 -2.5307 39 1 4.6679 -6.8336 -0.7844 40 1 2.0789 -6.1349 -2.2434 41 1 3.2810 -4.9698 -1.6395 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186248194.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:20:37 Heat of formation + Delta-G solvation = 59.368235 kcal Electronic energy + Delta-G solvation = -23181.407878 eV Core-core repulsion = 19712.267246 eV Total energy + Delta-G solvation = -3469.140632 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.28430 -39.31807 -37.78870 -35.32901 -33.86460 -32.50353 -31.48504 -31.20237 -30.62147 -28.46033 -26.17048 -24.30638 -23.18336 -22.62739 -22.04368 -21.29877 -19.73061 -19.15960 -17.85455 -17.45588 -16.29094 -15.87563 -15.42054 -15.20332 -14.90469 -14.69909 -14.58799 -14.15474 -13.96965 -13.82988 -13.59788 -13.07588 -12.98487 -12.64963 -12.22062 -12.18588 -11.67673 -11.52756 -11.38493 -11.06928 -11.05487 -10.90885 -10.42552 -10.35476 -10.30557 -10.22042 -10.15546 -9.95402 -9.78063 -9.47115 -8.41402 -7.96463 -7.82561 -6.41400 -3.82125 1.41457 2.08398 2.74549 3.15996 3.26429 3.33480 3.92225 4.01622 4.07573 4.13854 4.25230 4.45386 4.63034 4.79394 4.82163 5.05441 5.11108 5.24457 5.25310 5.36554 5.37891 5.52312 5.64355 5.68791 5.81214 5.85349 5.91239 5.97595 6.03707 6.11226 6.19157 6.28984 6.38824 6.39204 6.49098 6.57073 7.33214 7.46488 7.55560 7.85209 8.07424 8.62756 9.18827 9.55688 10.07571 10.76540 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.051179 B = 0.002616 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.970421 B =10700.866264 C =11025.328209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.021 3.979 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.297 4.297 8 H 0.103 0.897 9 N -0.566 5.566 10 C 0.444 3.556 11 O -0.577 6.577 12 C 0.046 3.954 13 N -0.514 5.514 14 C 0.057 3.943 15 C -0.114 4.114 16 C -0.098 4.098 17 C 0.131 3.869 18 N -0.371 5.371 19 C 0.249 3.751 20 N -0.551 5.551 21 C 0.190 3.810 22 N -0.309 5.309 23 C -0.105 4.105 24 C 0.058 3.942 25 H 0.271 0.729 26 H 0.392 0.608 27 H 0.088 0.912 28 H 0.045 0.955 29 H 0.073 0.927 30 H 0.025 0.975 31 H 0.090 0.910 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.102 0.898 35 H 0.093 0.907 36 H 0.216 0.784 37 H 0.214 0.786 38 H 0.065 0.935 39 H 0.078 0.922 40 H 0.021 0.979 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.138 -20.278 -4.317 21.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.180 4.180 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.427 4.427 8 H 0.121 0.879 9 N -0.203 5.203 10 C 0.230 3.770 11 O -0.461 6.461 12 C -0.086 4.086 13 N -0.239 5.239 14 C -0.071 4.071 15 C -0.152 4.152 16 C -0.118 4.118 17 C 0.009 3.991 18 N -0.162 5.162 19 C -0.048 4.048 20 N -0.279 5.279 21 C -0.113 4.113 22 N -0.137 5.137 23 C -0.143 4.143 24 C -0.070 4.070 25 H 0.080 0.920 26 H 0.225 0.775 27 H 0.107 0.893 28 H 0.063 0.937 29 H 0.092 0.908 30 H 0.043 0.957 31 H 0.108 0.892 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.120 0.880 35 H 0.111 0.889 36 H 0.233 0.767 37 H 0.231 0.769 38 H 0.084 0.916 39 H 0.097 0.903 40 H 0.039 0.961 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 4.951 -19.906 -3.498 20.808 hybrid contribution -0.837 0.903 -0.783 1.460 sum 4.114 -19.003 -4.281 19.909 Atomic orbital electron populations 1.69620 1.05941 1.28010 1.50829 1.25260 0.95629 0.99712 0.97443 0.85811 0.79698 0.81203 0.77693 1.19233 1.20804 1.20755 1.19739 0.93351 0.82208 1.47366 0.87888 1.41901 1.09197 1.04633 1.64600 1.19765 0.88430 0.84521 0.84307 1.90496 1.13646 1.86966 1.54944 1.21849 0.93754 0.91351 1.01602 1.61517 1.31053 1.01050 1.30287 1.22100 0.95257 0.89280 1.00509 1.21813 0.98734 0.98809 0.95794 1.21522 0.96622 0.94033 0.99602 1.22075 0.95505 0.77450 1.04042 1.50650 1.34655 1.12519 1.18377 1.26051 0.98227 0.83342 0.97196 1.70522 1.14129 1.29997 1.13241 1.26043 0.99522 0.91672 0.94024 1.78005 1.10618 1.14119 1.10982 1.21551 0.98771 0.92188 1.01805 1.22119 0.95703 1.00918 0.88260 0.91954 0.77531 0.89340 0.93747 0.90844 0.95710 0.89187 0.91182 0.91201 0.88009 0.88889 0.76734 0.76918 0.91624 0.90329 0.96118 0.88268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.62 13.05 55.50 0.72 -23.89 16 2 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 3 Si 0.93 21.02 29.55 -169.99 -5.02 15.99 16 4 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 5 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 7 C -0.30 -8.26 9.68 -14.93 -0.14 -8.40 16 8 H 0.10 3.00 7.16 -52.48 -0.38 2.63 16 9 N -0.57 -14.37 5.29 -10.96 -0.06 -14.42 16 10 C 0.44 10.46 7.31 -10.99 -0.08 10.38 16 11 O -0.58 -15.37 14.29 5.55 0.08 -15.29 16 12 C 0.05 0.83 5.45 -4.98 -0.03 0.81 16 13 N -0.51 -8.59 4.35 -236.12 -1.03 -9.62 16 14 C 0.06 0.77 5.46 -3.83 -0.02 0.75 16 15 C -0.11 -1.36 5.05 -26.65 -0.13 -1.49 16 16 C -0.10 -1.00 2.46 -90.50 -0.22 -1.22 16 17 C 0.13 1.00 6.00 -4.04 -0.02 0.97 16 18 N -0.37 -3.41 3.69 -62.63 -0.23 -3.65 16 19 C 0.25 2.02 12.63 -90.66 -1.14 0.87 16 20 N -0.55 -5.73 11.19 -15.83 -0.18 -5.91 16 21 C 0.19 1.88 13.03 -91.82 -1.20 0.68 16 22 N -0.31 -3.41 9.90 29.29 0.29 -3.12 16 23 C -0.10 -1.23 5.38 -26.65 -0.14 -1.37 16 24 C 0.06 0.90 5.12 -3.83 -0.02 0.88 16 25 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 26 H 0.39 9.55 7.90 -40.82 -0.32 9.23 16 27 H 0.09 1.48 7.98 -51.93 -0.41 1.06 16 28 H 0.04 0.75 8.12 -51.93 -0.42 0.33 16 29 H 0.07 0.97 8.01 -51.93 -0.42 0.55 16 30 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.09 1.09 5.58 -51.93 -0.29 0.80 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.10 0.47 8.09 -51.93 -0.42 0.05 16 35 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.22 0.78 8.06 -52.48 -0.42 0.36 16 37 H 0.21 1.40 8.06 -52.48 -0.42 0.98 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 41 H 0.10 1.90 6.06 -51.93 -0.31 1.58 16 LS Contribution 335.97 15.07 5.06 5.06 Total: -1.00 -33.51 335.97 -9.53 -43.04 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -5.91 Total: 8.47 kcal Atomic # 6 Polarization: 6.59 SS G_CDS: -3.25 Total: 3.34 kcal Atomic # 7 Polarization: -60.13 SS G_CDS: -0.48 Total: -60.61 kcal Atomic # 8 Polarization: -15.37 SS G_CDS: 0.08 Total: -15.29 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.51 -9.53 -43.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186248194.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.407 kcal (2) G-P(sol) polarization free energy of solvation -33.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds