Wall clock time and date at job start Tue Mar 31 2020 03:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86803 * 120.00156 * 2 1 4 4 H 1.48499 * 109.46834 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46893 * 300.00363 * 3 2 1 6 6 H 1.48502 * 109.46882 * 60.00232 * 3 2 1 7 7 C 1.38946 * 119.99990 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00395 * 180.02562 * 7 2 1 9 9 N 1.37105 * 119.99950 * 359.97438 * 7 2 1 10 10 C 1.34779 * 119.99867 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00284 * 0.02562 * 10 9 7 12 12 C 1.50697 * 119.99759 * 180.02562 * 10 9 7 13 13 N 1.46900 * 109.47237 * 173.73332 * 12 10 9 14 14 C 1.46845 * 111.00126 * 169.39888 * 13 12 10 15 15 C 1.53042 * 109.51991 * 185.83890 * 14 13 12 16 16 C 1.53108 * 109.28196 * 300.82034 * 15 14 13 17 17 C 1.53002 * 109.52692 * 177.56315 * 16 15 14 18 18 N 1.46500 * 109.47007 * 65.31572 * 17 16 15 19 19 C 1.34423 * 126.82051 * 125.00849 * 18 17 16 20 20 N 1.30828 * 108.07633 * 179.97438 * 19 18 17 21 21 C 1.33242 * 109.82973 * 359.97438 * 20 19 18 22 22 N 1.30707 * 108.94432 * 359.75060 * 21 20 19 23 23 C 1.53127 * 109.16238 * 57.65720 * 16 15 14 24 24 C 1.46852 * 111.00118 * 293.61170 * 13 12 10 25 25 H 0.97002 * 120.00090 * 359.97438 * 1 2 3 26 26 H 0.96992 * 119.99644 * 0.02562 * 9 7 2 27 27 H 1.08996 * 109.46989 * 293.73073 * 12 10 9 28 28 H 1.08994 * 109.47105 * 53.73252 * 12 10 9 29 29 H 1.08998 * 109.46555 * 305.85433 * 14 13 12 30 30 H 1.08993 * 109.45955 * 65.82786 * 14 13 12 31 31 H 1.09005 * 109.49799 * 180.87612 * 15 14 13 32 32 H 1.09001 * 109.50127 * 60.76638 * 15 14 13 33 33 H 1.09003 * 109.52716 * 297.75527 * 16 15 14 34 34 H 1.09001 * 109.47545 * 185.32319 * 17 16 15 35 35 H 1.09001 * 109.46490 * 305.31875 * 17 16 15 36 36 H 1.08005 * 125.96317 * 359.97438 * 19 18 17 37 37 H 1.08003 * 125.52332 * 180.02562 * 21 20 19 38 38 H 1.08994 * 109.50293 * 182.40848 * 23 16 15 39 39 H 1.08998 * 109.50093 * 62.28250 * 23 16 15 40 40 H 1.08992 * 109.46257 * 294.17720 * 24 13 12 41 41 H 1.09001 * 109.46118 * 54.14126 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3463 -0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8894 2.3964 1.2126 7 6 2.0088 -1.2033 -0.0005 8 1 3.0888 -1.2034 -0.0001 9 7 1.3232 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2101 -3.5579 -0.0001 12 6 1.2436 -4.8629 -0.0011 13 7 2.1911 -5.9754 -0.1522 14 6 1.5323 -7.2647 0.0928 15 6 2.5754 -8.3843 0.0706 16 6 3.2738 -8.3976 -1.2918 17 6 4.3598 -9.4754 -1.2993 18 7 3.7378 -10.7962 -1.1777 19 6 3.8944 -11.8401 -2.0100 20 7 3.1741 -12.8332 -1.5555 21 6 2.5467 -12.4630 -0.4398 22 7 2.8649 -11.2255 -0.1648 23 6 3.9105 -7.0280 -1.5437 24 6 2.8287 -5.9477 -1.4748 25 1 -0.4850 0.8401 0.0004 26 1 0.3533 -2.3906 -0.0005 27 1 0.7035 -4.9710 0.9394 28 1 0.5359 -4.8734 -0.8299 29 1 1.0431 -7.2433 1.0667 30 1 0.7886 -7.4457 -0.6831 31 1 2.0839 -9.3429 0.2371 32 1 3.3118 -8.2112 0.8554 33 1 2.5440 -8.6093 -2.0733 34 1 4.9188 -9.4216 -2.2335 35 1 5.0373 -9.3142 -0.4608 36 1 4.5079 -11.8563 -2.8987 37 1 1.8863 -13.0862 0.1450 38 1 4.3727 -7.0175 -2.5307 39 1 4.6679 -6.8336 -0.7844 40 1 2.0789 -6.1349 -2.2434 41 1 3.2810 -4.9698 -1.6395 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186248194.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:20:36 Heat of formation + Delta-G solvation = 37.547854 kcal Electronic energy + Delta-G solvation = -23182.354080 eV Core-core repulsion = 19712.267246 eV Total energy + Delta-G solvation = -3470.086834 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.93495 -40.69932 -39.36413 -36.41808 -35.77889 -33.52814 -33.16477 -32.19150 -31.66577 -29.64803 -27.53089 -25.93687 -24.23181 -23.63675 -22.70530 -22.10135 -21.03161 -20.71462 -19.87801 -18.10760 -17.76467 -17.06508 -16.62176 -16.41200 -16.25957 -15.92432 -15.62195 -15.41199 -15.31290 -15.08652 -14.78474 -14.20614 -14.08943 -13.89321 -13.49705 -13.35309 -13.18800 -13.00755 -12.69295 -12.56149 -12.40760 -12.13832 -12.10854 -11.89721 -11.54620 -11.32971 -11.26049 -10.87071 -10.67666 -10.51398 -10.25110 -10.00132 -9.19308 -8.46789 -5.95460 0.78574 1.36140 1.41176 1.49393 1.55521 2.05118 2.08645 2.28001 2.77164 3.19981 3.38268 3.49453 3.60006 3.70610 3.84558 3.98713 4.17248 4.24549 4.29076 4.33186 4.36135 4.47320 4.52046 4.56985 4.60640 4.65961 4.80226 4.87741 5.03074 5.05833 5.18293 5.23913 5.37384 5.40812 5.46277 5.65679 5.90447 6.00427 6.10762 6.26456 6.60584 7.12932 7.20484 7.56428 8.12034 8.71049 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.051179 B = 0.002616 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.970421 B =10700.866264 C =11025.328209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.015 4.015 3 Si 0.993 3.007 4 H -0.272 1.272 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.329 4.329 8 H 0.079 0.921 9 N -0.577 5.577 10 C 0.444 3.556 11 O -0.611 6.611 12 C 0.056 3.944 13 N -0.532 5.532 14 C 0.058 3.942 15 C -0.107 4.107 16 C -0.088 4.088 17 C 0.134 3.866 18 N -0.378 5.378 19 C 0.257 3.743 20 N -0.582 5.582 21 C 0.185 3.815 22 N -0.343 5.343 23 C -0.096 4.096 24 C 0.056 3.944 25 H 0.277 0.723 26 H 0.395 0.605 27 H 0.106 0.894 28 H 0.061 0.939 29 H 0.076 0.924 30 H 0.032 0.968 31 H 0.092 0.908 32 H 0.056 0.944 33 H 0.070 0.930 34 H 0.142 0.858 35 H 0.091 0.909 36 H 0.258 0.742 37 H 0.234 0.766 38 H 0.093 0.907 39 H 0.065 0.935 40 H 0.029 0.971 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.474 -21.314 -5.334 22.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.215 4.215 3 Si 0.817 3.183 4 H -0.197 1.197 5 H -0.196 1.196 6 H -0.197 1.197 7 C -0.459 4.459 8 H 0.097 0.903 9 N -0.214 5.214 10 C 0.231 3.769 11 O -0.497 6.497 12 C -0.075 4.075 13 N -0.257 5.257 14 C -0.069 4.069 15 C -0.145 4.145 16 C -0.107 4.107 17 C 0.013 3.987 18 N -0.168 5.168 19 C -0.039 4.039 20 N -0.310 5.310 21 C -0.118 4.118 22 N -0.172 5.172 23 C -0.134 4.134 24 C -0.072 4.072 25 H 0.086 0.914 26 H 0.228 0.772 27 H 0.124 0.876 28 H 0.079 0.921 29 H 0.094 0.906 30 H 0.050 0.950 31 H 0.110 0.890 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.160 0.840 35 H 0.109 0.891 36 H 0.274 0.726 37 H 0.250 0.750 38 H 0.111 0.889 39 H 0.084 0.916 40 H 0.047 0.953 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.267 -20.957 -4.513 22.075 hybrid contribution -0.941 1.172 -0.473 1.576 sum 4.327 -19.785 -4.986 20.857 Atomic orbital electron populations 1.69683 1.06882 1.29188 1.50634 1.26054 0.96546 1.02462 0.96408 0.84865 0.78059 0.77079 0.78296 1.19694 1.19592 1.19686 1.19688 0.92659 0.83911 1.49622 0.90251 1.41972 1.09280 1.04776 1.65407 1.20705 0.88314 0.85763 0.82132 1.90468 1.15512 1.87773 1.55929 1.21725 0.93567 0.89054 1.03170 1.61517 1.31271 1.01777 1.31156 1.22160 0.95820 0.88101 1.00834 1.21747 0.98065 0.97963 0.96723 1.21368 0.97198 0.93953 0.98207 1.22138 0.94415 0.76031 1.06134 1.50702 1.34691 1.13126 1.18282 1.26883 0.97254 0.82257 0.97480 1.70545 1.15302 1.31275 1.13867 1.26521 0.99455 0.91671 0.94123 1.77931 1.11967 1.14839 1.12425 1.21470 0.97175 0.91752 1.03001 1.22086 0.96790 1.00259 0.88053 0.91355 0.77163 0.87635 0.92079 0.90601 0.94973 0.89002 0.92555 0.91121 0.84048 0.89079 0.72617 0.75007 0.88869 0.91642 0.95282 0.92408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.25 13.05 21.66 0.28 -49.97 16 2 C -0.02 -0.83 5.50 84.93 0.47 -0.36 16 3 Si 0.99 43.10 29.55 68.60 2.03 45.13 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 5 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 6 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 7 C -0.33 -18.80 9.68 84.04 0.81 -17.99 16 8 H 0.08 4.83 7.16 -2.91 -0.02 4.80 16 9 N -0.58 -30.02 5.29 -306.98 -1.62 -31.64 16 10 C 0.44 21.42 7.31 87.66 0.64 22.06 16 11 O -0.61 -33.78 14.29 -3.07 -0.04 -33.82 16 12 C 0.06 2.03 5.45 85.56 0.47 2.50 16 13 N -0.53 -17.61 4.35 -900.96 -3.92 -21.52 16 14 C 0.06 1.52 5.46 86.33 0.47 1.99 16 15 C -0.11 -2.44 5.05 30.64 0.15 -2.28 16 16 C -0.09 -1.59 2.46 -10.71 -0.03 -1.61 16 17 C 0.13 1.65 6.00 86.38 0.52 2.17 16 18 N -0.38 -6.00 3.69 -352.06 -1.30 -7.30 16 19 C 0.26 3.40 12.63 180.36 2.28 5.67 16 20 N -0.58 -10.97 11.19 -204.01 -2.28 -13.25 16 21 C 0.18 3.42 13.03 180.77 2.36 5.77 16 22 N -0.34 -7.09 9.90 -61.25 -0.61 -7.70 16 23 C -0.10 -2.10 5.38 30.65 0.16 -1.93 16 24 C 0.06 1.74 5.12 86.32 0.44 2.18 16 25 H 0.28 14.08 8.31 -92.71 -0.77 13.31 16 26 H 0.39 19.64 7.90 -92.71 -0.73 18.90 16 27 H 0.11 3.45 7.98 -2.39 -0.02 3.43 16 28 H 0.06 2.01 8.12 -2.39 -0.02 1.99 16 29 H 0.08 1.92 8.01 -2.39 -0.02 1.90 16 30 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.09 2.12 5.58 -2.38 -0.01 2.11 16 32 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.14 0.64 8.09 -2.39 -0.02 0.62 16 35 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.26 0.72 8.06 -2.91 -0.02 0.70 16 37 H 0.23 2.82 8.06 -2.91 -0.02 2.80 16 38 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.06 2.28 6.06 -2.39 -0.01 2.27 16 Total: -1.00 -74.36 335.97 1.59 -72.77 By element: Atomic # 1 Polarization: 28.83 SS G_CDS: 0.31 Total: 29.14 kcal Atomic # 6 Polarization: 9.42 SS G_CDS: 8.74 Total: 18.17 kcal Atomic # 7 Polarization: -121.94 SS G_CDS: -9.44 Total: -131.38 kcal Atomic # 8 Polarization: -33.78 SS G_CDS: -0.04 Total: -33.82 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -74.36 1.59 -72.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186248194.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.318 kcal (2) G-P(sol) polarization free energy of solvation -74.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds