Wall clock time and date at job start Tue Mar 31 2020 02:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46500 * 109.46815 * 2 1 4 4 C 1.46503 * 119.99947 * 269.99968 * 3 2 1 5 5 C 1.50705 * 109.46969 * 269.99999 * 4 3 2 6 6 H 1.07996 * 119.99996 * 359.97438 * 5 4 3 7 7 C 1.37872 * 119.99841 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00151 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 119.99849 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.46853 * 90.00395 * 9 7 5 11 11 H 1.48496 * 109.47073 * 209.99967 * 9 7 5 12 12 H 1.48496 * 109.47287 * 330.00261 * 9 7 5 13 13 C 1.34780 * 120.00491 * 89.99778 * 3 2 1 14 14 O 1.21275 * 120.00516 * 179.97438 * 13 3 2 15 15 C 1.50706 * 119.99629 * 0.02562 * 13 3 2 16 16 N 1.46493 * 109.47117 * 179.97438 * 15 13 3 17 17 C 1.34749 * 120.03924 * 89.99775 * 16 15 13 18 18 N 1.30644 * 121.49206 * 180.02562 * 17 16 15 19 19 C 1.33516 * 121.50865 * 0.02562 * 18 17 16 20 20 C 1.50697 * 120.04872 * 179.97438 * 19 18 17 21 21 C 1.36208 * 119.90476 * 0.02562 * 19 18 17 22 22 C 1.50697 * 120.70054 * 180.02562 * 21 19 18 23 23 C 1.35017 * 120.04465 * 270.02416 * 16 15 13 24 24 O 1.21984 * 120.71074 * 0.02562 * 23 16 15 25 25 H 1.09000 * 109.47635 * 60.00779 * 1 2 3 26 26 H 1.09003 * 109.46842 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47612 * 300.00050 * 1 2 3 28 28 H 1.08993 * 109.47612 * 239.99950 * 2 1 3 29 29 H 1.09003 * 109.46909 * 119.99225 * 2 1 3 30 30 H 1.08997 * 109.46989 * 29.99869 * 4 3 2 31 31 H 1.09000 * 109.47116 * 149.99951 * 4 3 2 32 32 H 0.96998 * 119.99852 * 179.97438 * 8 7 5 33 33 H 1.09001 * 109.47116 * 59.99789 * 15 13 3 34 34 H 1.09001 * 109.46857 * 299.99762 * 15 13 3 35 35 H 1.08000 * 119.25630 * 0.04807 * 17 16 15 36 36 H 1.08999 * 109.47141 * 0.02562 * 20 19 18 37 37 H 1.09000 * 109.46690 * 120.00652 * 20 19 18 38 38 H 1.08999 * 109.47250 * 239.99925 * 20 19 18 39 39 H 1.09002 * 109.47161 * 179.97438 * 22 21 19 40 40 H 1.08996 * 109.47090 * 299.97158 * 22 21 19 41 41 H 1.09000 * 109.47444 * 59.96977 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.2624 2.0719 -1.2688 5 6 3.6857 1.8351 -1.7038 6 1 4.3428 1.2310 -1.0958 7 6 4.1490 2.3897 -2.8779 8 7 3.3489 3.1257 -3.6181 9 14 5.9135 2.0968 -3.4168 10 1 5.9775 0.8755 -4.2590 11 1 6.3920 3.2640 -4.2003 12 1 6.7735 1.9181 -2.2195 13 6 2.2428 2.0167 1.1672 14 8 2.6474 3.1600 1.1672 15 6 1.9922 1.3061 2.4723 16 7 2.3099 2.2035 3.5858 17 6 1.3564 3.0055 4.0989 18 7 1.6085 3.8170 5.0913 19 6 2.8225 3.8893 5.6423 20 6 3.0770 4.8376 6.7855 21 6 3.8309 3.1056 5.1690 22 6 5.2078 3.1723 5.7779 23 6 3.5585 2.2285 4.0988 24 8 4.4330 1.5093 3.6448 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8901 30 1 1.5816 1.6877 -2.0284 31 1 2.0953 3.1411 -1.1384 32 1 3.6750 3.5162 -4.4440 33 1 2.6228 0.4189 2.5299 34 1 0.9443 1.0115 2.5302 35 1 0.3611 2.9767 3.6806 36 1 2.1592 5.3757 7.0225 37 1 3.4033 4.2738 7.6594 38 1 3.8527 5.5489 6.5018 39 1 5.8670 2.4732 5.2631 40 1 5.6010 4.1838 5.6771 41 1 5.1514 2.9080 6.8338 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188240127.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:58:27 Heat of formation + Delta-G solvation = -56.889139 kcal Electronic energy + Delta-G solvation = -24021.269845 eV Core-core repulsion = 20514.795164 eV Total energy + Delta-G solvation = -3506.474681 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -43.01734 -40.70881 -38.82842 -37.35094 -36.84172 -34.98056 -33.65086 -31.74357 -31.18434 -29.83484 -28.57952 -27.64495 -25.03242 -24.36704 -24.02413 -23.09324 -20.35920 -19.69502 -18.76953 -18.51296 -18.22255 -17.43895 -16.90864 -16.76820 -16.35833 -15.85739 -15.66877 -14.95225 -14.71503 -14.67153 -14.57373 -14.46108 -13.97393 -13.92914 -13.70262 -13.50737 -13.31022 -13.22443 -13.18599 -13.08027 -12.81336 -12.71095 -12.55176 -12.21506 -11.90899 -11.78710 -11.58865 -11.29356 -11.06251 -10.69400 -10.62486 -9.55369 -9.32550 -8.29130 -6.42968 -0.39008 0.79019 1.27401 1.29857 1.33012 1.43220 1.60076 2.18945 2.34229 2.59251 3.00668 3.08547 3.41976 3.46095 3.63582 3.81037 3.99455 4.10074 4.17831 4.22384 4.41918 4.57803 4.63491 4.65564 4.72186 4.87220 4.90381 4.97982 4.99922 5.05944 5.06533 5.16193 5.25584 5.43204 5.45240 5.47959 5.51356 5.76879 6.00347 6.57875 6.67549 6.72396 6.77554 7.18203 7.32780 8.77721 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.016722 B = 0.004583 C = 0.004013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.024248 B = 6108.596840 C = 6975.122144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.091 3.909 3 N -0.594 5.594 4 C 0.265 3.735 5 C -0.547 4.547 6 H 0.044 0.956 7 C 0.013 3.987 8 N -0.923 5.923 9 Si 0.961 3.039 10 H -0.258 1.258 11 H -0.277 1.277 12 H -0.283 1.283 13 C 0.485 3.515 14 O -0.592 6.592 15 C 0.080 3.920 16 N -0.506 5.506 17 C 0.382 3.618 18 N -0.548 5.548 19 C 0.176 3.824 20 C -0.102 4.102 21 C -0.292 4.292 22 C -0.080 4.080 23 C 0.506 3.494 24 O -0.584 6.584 25 H 0.040 0.960 26 H 0.097 0.903 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.099 0.901 30 H 0.031 0.969 31 H -0.001 1.001 32 H 0.268 0.732 33 H 0.129 0.871 34 H 0.184 0.816 35 H 0.247 0.753 36 H 0.088 0.912 37 H 0.106 0.894 38 H 0.092 0.908 39 H 0.045 0.955 40 H 0.078 0.922 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.700 -4.734 19.735 22.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.030 4.030 3 N -0.324 5.324 4 C 0.144 3.856 5 C -0.586 4.586 6 H 0.062 0.938 7 C -0.186 4.186 8 N -0.563 5.563 9 Si 0.785 3.215 10 H -0.183 1.183 11 H -0.202 1.202 12 H -0.208 1.208 13 C 0.272 3.728 14 O -0.473 6.473 15 C -0.045 4.045 16 N -0.220 5.220 17 C 0.100 3.900 18 N -0.269 5.269 19 C 0.056 3.944 20 C -0.159 4.159 21 C -0.298 4.298 22 C -0.138 4.138 23 C 0.308 3.692 24 O -0.466 6.466 25 H 0.059 0.941 26 H 0.116 0.884 27 H 0.093 0.907 28 H 0.090 0.910 29 H 0.118 0.882 30 H 0.049 0.951 31 H 0.017 0.983 32 H 0.077 0.923 33 H 0.147 0.853 34 H 0.201 0.799 35 H 0.263 0.737 36 H 0.107 0.893 37 H 0.124 0.876 38 H 0.110 0.890 39 H 0.064 0.936 40 H 0.097 0.903 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -8.446 -3.991 19.653 21.760 hybrid contribution 1.779 -0.361 -1.530 2.374 sum -6.667 -4.352 18.123 19.794 Atomic orbital electron populations 1.22169 0.93245 1.03955 1.02460 1.21900 0.96236 0.80741 1.04158 1.48240 1.63147 1.15229 1.05820 1.18716 0.95015 0.91633 0.80279 1.21692 0.98205 1.32197 1.06503 0.93799 1.25751 1.02050 0.94432 0.96411 1.70020 1.37550 1.33951 1.14764 0.85523 0.79347 0.78595 0.78011 1.18290 1.20202 1.20830 1.21246 0.78022 0.86777 0.86759 1.90695 1.47864 1.20920 1.87856 1.22150 1.08019 0.92945 0.81408 1.46401 1.11817 1.34994 1.28819 1.25853 0.95434 0.81645 0.87115 1.68337 1.22595 1.22592 1.13403 1.21588 0.86817 0.91928 0.94079 1.20892 1.04277 0.97148 0.93584 1.21558 1.01466 1.04688 1.02096 1.20372 0.90066 1.02570 1.00799 1.17657 0.81525 0.85042 0.84962 1.90889 1.45048 1.46100 1.64587 0.94080 0.88443 0.90745 0.91017 0.88249 0.95093 0.98332 0.92268 0.85311 0.79906 0.73723 0.89328 0.87602 0.88964 0.93567 0.90332 0.88569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.12 10.24 71.98 0.74 -2.39 16 2 C 0.09 2.53 5.93 86.38 0.51 3.04 16 3 N -0.59 -24.20 2.46 -826.15 -2.03 -26.23 16 4 C 0.26 14.20 5.16 85.63 0.44 14.64 16 5 C -0.55 -32.58 9.39 25.60 0.24 -32.34 16 6 H 0.04 2.67 7.81 -2.91 -0.02 2.65 16 7 C 0.01 0.77 5.46 84.65 0.46 1.23 16 8 N -0.92 -56.33 13.29 21.45 0.28 -56.05 16 9 Si 0.96 46.74 29.54 68.60 2.03 48.76 16 10 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 11 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 12 H -0.28 -14.11 7.11 99.48 0.71 -13.40 16 13 C 0.48 19.62 7.74 87.66 0.68 20.30 16 14 O -0.59 -31.10 16.01 -3.01 -0.05 -31.15 16 15 C 0.08 2.11 4.41 85.64 0.38 2.48 16 16 N -0.51 -14.75 2.06 -659.13 -1.36 -16.11 16 17 C 0.38 8.58 11.48 180.31 2.07 10.64 16 18 N -0.55 -13.25 10.31 -187.75 -1.94 -15.19 16 19 C 0.18 4.31 6.77 41.83 0.28 4.59 16 20 C -0.10 -1.56 9.22 71.24 0.66 -0.90 16 21 C -0.29 -8.70 5.91 -19.65 -0.12 -8.82 16 22 C -0.08 -2.00 9.11 71.24 0.65 -1.35 16 23 C 0.51 18.43 7.43 84.89 0.63 19.06 16 24 O -0.58 -26.05 15.74 -5.26 -0.08 -26.14 16 25 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.07 1.09 7.22 -2.39 -0.02 1.07 16 28 H 0.07 2.21 8.07 -2.39 -0.02 2.19 16 29 H 0.10 2.08 6.44 -2.39 -0.02 2.06 16 30 H 0.03 1.66 8.07 -2.39 -0.02 1.64 16 31 H 0.00 -0.09 7.42 -2.39 -0.02 -0.11 16 32 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 33 H 0.13 3.42 6.72 -2.39 -0.02 3.40 16 34 H 0.18 2.34 7.06 -2.39 -0.02 2.32 16 35 H 0.25 2.87 8.03 -2.91 -0.02 2.85 16 36 H 0.09 1.21 8.12 -2.39 -0.02 1.19 16 37 H 0.11 1.13 8.02 -2.39 -0.02 1.11 16 38 H 0.09 1.28 8.02 -2.39 -0.02 1.26 16 39 H 0.05 1.40 7.21 -2.39 -0.02 1.39 16 40 H 0.08 1.71 8.02 -2.39 -0.02 1.69 16 41 H 0.10 1.71 8.02 -2.39 -0.02 1.69 16 Total: -1.00 -90.85 347.81 5.51 -85.34 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: 1.03 Total: 6.56 kcal Atomic # 6 Polarization: 22.58 SS G_CDS: 7.62 Total: 30.20 kcal Atomic # 7 Polarization: -108.53 SS G_CDS: -5.04 Total: -113.57 kcal Atomic # 8 Polarization: -57.15 SS G_CDS: -0.13 Total: -57.29 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 2.03 Total: 48.76 kcal Total: -90.85 5.51 -85.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188240127.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.448 kcal (2) G-P(sol) polarization free energy of solvation -90.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds