Wall clock time and date at job start Tue Mar 31 2020 03:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46489 * 1 3 3 C 1.45758 * 117.95058 * 2 1 4 4 C 1.52924 * 110.48949 * 199.07369 * 3 2 1 5 5 C 1.53343 * 108.67169 * 309.24649 * 4 3 2 6 6 H 1.08997 * 109.67085 * 307.75795 * 5 4 3 7 7 C 1.50700 * 109.66983 * 187.26906 * 5 4 3 8 8 O 1.21285 * 120.00001 * 333.00047 * 7 5 4 9 9 N 1.34776 * 120.00273 * 153.00823 * 7 5 4 10 10 C 1.46500 * 120.00191 * 185.27170 * 9 7 5 11 11 C 1.50690 * 109.47201 * 269.99509 * 10 9 7 12 12 H 1.08005 * 120.00332 * 0.02562 * 11 10 9 13 13 C 1.37883 * 120.00109 * 180.02562 * 11 10 9 14 14 N 1.31511 * 119.99712 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00075 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47508 * 89.99439 * 15 13 11 17 17 H 1.48498 * 109.46905 * 209.99798 * 15 13 11 18 18 H 1.48497 * 109.47012 * 329.99461 * 15 13 11 19 19 C 1.46508 * 119.99610 * 5.26879 * 9 7 5 20 20 C 1.52996 * 109.46919 * 96.52285 * 19 9 7 21 21 C 1.47201 * 109.46976 * 184.00143 * 20 19 9 22 22 N 6.57292 * 121.96477 * 130.85006 * 2 1 3 23 23 C 1.53060 * 108.45778 * 67.51255 * 5 4 3 24 24 C 1.33354 * 117.94895 * 179.97438 * 2 1 3 25 25 O 1.21289 * 118.24315 * 357.79851 * 24 2 1 26 26 H 1.09007 * 109.47126 * 90.00189 * 1 2 3 27 27 H 1.09001 * 109.47794 * 209.99977 * 1 2 3 28 28 H 1.09005 * 109.47430 * 330.00845 * 1 2 3 29 29 H 1.08996 * 109.30306 * 78.75622 * 3 2 1 30 30 H 1.09002 * 109.12898 * 319.27535 * 3 2 1 31 31 H 1.08999 * 109.60230 * 189.48656 * 4 3 2 32 32 H 1.08993 * 109.60042 * 69.00190 * 4 3 2 33 33 H 1.09000 * 109.47114 * 30.00121 * 10 9 7 34 34 H 1.09008 * 109.46726 * 149.99622 * 10 9 7 35 35 H 0.97006 * 119.99682 * 180.02562 * 14 13 11 36 36 H 1.08991 * 109.47158 * 336.51698 * 19 9 7 37 37 H 1.09000 * 109.46595 * 216.51858 * 19 9 7 38 38 H 1.08999 * 109.47413 * 63.99910 * 20 19 9 39 39 H 1.08998 * 109.47350 * 303.99979 * 20 19 9 40 40 H 1.09002 * 109.40284 * 71.24411 * 23 5 4 41 41 H 1.09006 * 109.40336 * 190.98583 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1481 1.2876 0.0000 4 6 3.5949 1.1258 -0.4681 5 6 4.2492 -0.0014 0.3397 6 1 4.1092 0.1817 1.4051 7 6 5.7216 -0.0625 0.0248 8 8 6.1283 0.3241 -1.0504 9 7 6.5866 -0.5469 0.9379 10 6 8.0277 -0.5000 0.6788 11 6 8.4532 -1.7635 -0.0236 12 1 7.7231 -2.5251 -0.2545 13 6 9.7747 -1.9472 -0.3717 14 7 10.6638 -1.0200 -0.0901 15 14 10.3020 -3.5131 -1.2431 16 1 10.2000 -3.3206 -2.7120 17 1 11.7067 -3.8315 -0.8819 18 1 9.4183 -4.6321 -0.8281 19 6 6.0855 -1.1204 2.1895 20 6 5.9955 -2.6416 2.0534 21 6 5.4024 -3.2093 3.2752 22 7 4.9446 -3.6474 4.2180 23 6 3.5839 -1.3243 -0.0476 24 6 2.0899 -1.1780 0.0005 25 8 1.4157 -2.1854 0.0420 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3635 -0.8900 0.5138 28 1 -0.3634 0.8901 0.5137 29 1 2.1398 1.6998 1.0089 30 1 1.6261 1.9689 -0.6719 31 1 4.1384 2.0563 -0.3043 32 1 3.6101 0.8725 -1.5281 33 1 8.2560 0.3602 0.0495 34 1 8.5640 -0.4114 1.6238 35 1 11.5934 -1.1492 -0.3353 36 1 5.0966 -0.7156 2.4043 37 1 6.7659 -0.8679 3.0027 38 1 6.9944 -3.0533 1.9093 39 1 5.3716 -2.8935 1.1958 40 1 3.8881 -1.6007 -1.0571 41 1 3.8945 -2.1034 0.6488 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195044104.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:03:16 Heat of formation + Delta-G solvation = -42.645000 kcal Electronic energy + Delta-G solvation = -24195.625915 eV Core-core repulsion = 20689.768907 eV Total energy + Delta-G solvation = -3505.857009 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.82738 -39.25204 -36.85634 -36.37312 -35.28345 -34.14375 -32.75789 -30.81342 -29.90197 -28.14556 -26.96333 -24.74939 -24.01084 -23.55568 -21.93908 -18.98335 -18.47681 -17.63192 -16.86160 -16.69224 -16.48579 -16.30907 -15.88377 -15.38156 -14.68845 -14.66557 -14.36137 -14.11958 -13.77118 -13.49421 -13.36928 -12.91255 -12.79656 -12.54604 -12.41213 -12.38121 -12.28521 -11.85636 -11.69468 -11.63084 -11.38027 -11.23660 -11.01223 -10.95192 -10.73263 -10.55047 -10.22183 -9.99453 -9.71149 -8.99286 -8.90130 -8.51237 -7.93600 -6.13291 -4.18308 2.54381 2.79599 2.86182 2.94859 3.17198 3.27207 3.34231 3.35629 3.58214 4.18573 4.36257 4.41965 4.50428 4.66124 4.74088 4.88928 5.03994 5.09159 5.18711 5.21311 5.23016 5.25774 5.30975 5.37970 5.52526 5.62655 5.65183 5.70517 5.81730 5.96456 6.08939 6.19191 6.22792 6.87683 7.26875 7.29545 7.35712 7.70062 7.81849 8.03821 8.10924 8.17063 8.75326 8.89907 9.47641 10.94854 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.015857 B = 0.004887 C = 0.004318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.396816 B = 5727.913152 C = 6482.877897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.609 5.609 3 C 0.114 3.886 4 C -0.117 4.117 5 C -0.118 4.118 6 H 0.097 0.903 7 C 0.514 3.486 8 O -0.526 6.526 9 N -0.595 5.595 10 C 0.245 3.755 11 C -0.529 4.529 12 H 0.061 0.939 13 C 0.064 3.936 14 N -0.892 5.892 15 Si 0.894 3.106 16 H -0.280 1.280 17 H -0.287 1.287 18 H -0.273 1.273 19 C 0.119 3.881 20 C -0.055 4.055 21 C 0.217 3.783 22 N -0.450 5.450 23 C -0.126 4.126 24 C 0.522 3.478 25 O -0.554 6.554 26 H 0.054 0.946 27 H 0.079 0.921 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.045 0.955 34 H 0.036 0.964 35 H 0.264 0.736 36 H 0.076 0.924 37 H 0.086 0.914 38 H 0.133 0.867 39 H 0.107 0.893 40 H 0.111 0.889 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.142 5.887 2.239 16.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.343 5.343 3 C -0.009 4.009 4 C -0.155 4.155 5 C -0.139 4.139 6 H 0.115 0.885 7 C 0.299 3.701 8 O -0.401 6.401 9 N -0.326 5.326 10 C 0.126 3.874 11 C -0.568 4.568 12 H 0.079 0.921 13 C -0.138 4.138 14 N -0.531 5.531 15 Si 0.722 3.278 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.198 1.198 19 C -0.008 4.008 20 C -0.096 4.096 21 C -0.101 4.101 22 N -0.127 5.127 23 C -0.166 4.166 24 C 0.310 3.690 25 O -0.432 6.432 26 H 0.073 0.927 27 H 0.098 0.902 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.097 0.903 31 H 0.110 0.890 32 H 0.103 0.897 33 H 0.063 0.937 34 H 0.054 0.946 35 H 0.074 0.926 36 H 0.094 0.906 37 H 0.105 0.895 38 H 0.151 0.849 39 H 0.124 0.876 40 H 0.129 0.871 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -15.697 4.979 3.078 16.753 hybrid contribution 0.675 -0.697 -0.844 1.286 sum -15.022 4.281 2.234 15.779 Atomic orbital electron populations 1.21687 0.79692 1.03236 1.01981 1.47265 1.07417 1.06283 1.73346 1.21506 0.93321 0.84306 1.01743 1.21728 0.93192 0.99276 1.01286 1.21548 0.94236 0.96128 1.02025 0.88492 1.20057 0.86835 0.78643 0.84524 1.90712 1.78912 1.48084 1.22434 1.48258 1.09585 1.57990 1.16776 1.19379 0.72213 0.98525 0.97299 1.21405 0.93462 1.03265 1.38640 0.92059 1.24912 0.96550 0.96751 0.95626 1.69917 1.02686 1.33613 1.46882 0.86562 0.77827 0.83253 0.80185 1.20572 1.21242 1.19772 1.21343 1.00441 0.90370 0.88596 1.20068 1.03869 0.96980 0.88729 1.29277 0.92901 0.93362 0.94574 1.81183 1.10337 1.09353 1.11863 1.21727 0.90524 0.98212 1.06146 1.20087 0.90690 0.82687 0.75504 1.90718 1.66298 1.35811 1.50397 0.92690 0.90195 0.91314 0.91429 0.90266 0.88989 0.89684 0.93729 0.94647 0.92644 0.90612 0.89535 0.84891 0.87551 0.87090 0.87585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.66 10.24 59.84 0.61 1.28 16 2 N -0.61 -6.34 3.21 -182.85 -0.59 -6.92 16 3 C 0.11 0.90 6.33 -4.48 -0.03 0.87 16 4 C -0.12 -1.19 4.76 -26.59 -0.13 -1.31 16 5 C -0.12 -1.39 1.83 -91.56 -0.17 -1.56 16 6 H 0.10 0.95 6.09 -51.93 -0.32 0.63 16 7 C 0.51 8.59 6.73 -10.99 -0.07 8.51 16 8 O -0.53 -11.18 15.93 5.55 0.09 -11.10 16 9 N -0.59 -10.11 2.47 -175.06 -0.43 -10.55 16 10 C 0.24 5.47 5.16 -5.20 -0.03 5.44 16 11 C -0.53 -13.07 8.54 -34.44 -0.29 -13.36 16 12 H 0.06 1.47 7.60 -52.48 -0.40 1.07 16 13 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 14 N -0.89 -24.62 13.29 55.43 0.74 -23.88 16 15 Si 0.89 20.39 29.54 -169.99 -5.02 15.37 16 16 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 17 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 19 C 0.12 1.51 5.25 -4.04 -0.02 1.49 16 20 C -0.06 -0.70 5.47 -29.52 -0.16 -0.87 16 21 C 0.22 2.97 15.43 -20.76 -0.32 2.65 16 22 N -0.45 -7.22 18.54 42.15 0.78 -6.44 16 23 C -0.13 -1.56 5.33 -28.10 -0.15 -1.71 16 24 C 0.52 6.90 7.47 -11.86 -0.09 6.81 16 25 O -0.55 -9.28 16.18 5.55 0.09 -9.19 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.08 0.82 7.13 -51.93 -0.37 0.45 16 28 H 0.07 0.41 8.02 -51.93 -0.42 -0.01 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.48 8.10 -51.93 -0.42 0.06 16 31 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.08 0.98 8.09 -51.93 -0.42 0.56 16 33 H 0.04 1.16 7.50 -51.93 -0.39 0.77 16 34 H 0.04 0.80 7.96 -51.92 -0.41 0.39 16 35 H 0.26 6.96 8.31 -40.82 -0.34 6.63 16 36 H 0.08 0.77 5.56 -51.93 -0.29 0.48 16 37 H 0.09 1.05 7.99 -51.93 -0.41 0.64 16 38 H 0.13 1.89 7.36 -51.93 -0.38 1.50 16 39 H 0.11 1.28 5.92 -51.93 -0.31 0.97 16 40 H 0.11 1.47 8.09 -51.93 -0.42 1.05 16 41 H 0.11 1.26 5.45 -51.93 -0.28 0.98 16 LS Contribution 342.05 15.07 5.15 5.15 Total: -1.00 -33.12 342.05 -5.78 -38.90 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: -5.64 Total: -1.17 kcal Atomic # 6 Polarization: 10.76 SS G_CDS: -0.94 Total: 9.82 kcal Atomic # 7 Polarization: -48.29 SS G_CDS: 0.50 Total: -47.79 kcal Atomic # 8 Polarization: -20.46 SS G_CDS: 0.18 Total: -20.28 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.12 -5.78 -38.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195044104.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.744 kcal (2) G-P(sol) polarization free energy of solvation -33.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds