Wall clock time and date at job start Tue Mar 31 2020 03:03:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.45752 * 117.94432 * 2 1 4 4 C 1.52939 * 110.47784 * 160.90798 * 3 2 1 5 5 C 1.53342 * 108.66244 * 50.78371 * 4 3 2 6 6 H 1.08992 * 109.70549 * 52.20208 * 5 4 3 7 7 C 1.50700 * 109.67433 * 172.72399 * 5 4 3 8 8 O 1.21281 * 119.99943 * 25.24628 * 7 5 4 9 9 N 1.34777 * 120.00044 * 205.24913 * 7 5 4 10 10 C 1.46494 * 120.00251 * 174.08357 * 9 7 5 11 11 C 1.50706 * 109.47158 * 90.00042 * 10 9 7 12 12 H 1.07999 * 119.99423 * 359.97438 * 11 10 9 13 13 C 1.37876 * 120.00188 * 180.02562 * 11 10 9 14 14 N 1.31511 * 120.00116 * 179.97438 * 13 11 10 15 15 Si 1.86799 * 119.99845 * 359.97438 * 13 11 10 16 16 H 1.48498 * 109.47368 * 90.00215 * 15 13 11 17 17 H 1.48505 * 109.47163 * 330.00146 * 15 13 11 18 18 H 1.48500 * 109.46985 * 210.00352 * 15 13 11 19 19 C 1.46504 * 119.99778 * 354.08435 * 9 7 5 20 20 C 1.52999 * 109.47073 * 262.99559 * 19 9 7 21 21 C 1.47198 * 109.47400 * 174.97648 * 20 19 9 22 22 N 6.53733 * 121.68775 * 226.95296 * 2 1 3 23 23 C 1.53075 * 108.42271 * 292.45593 * 5 4 3 24 24 C 1.33345 * 117.94549 * 180.02562 * 2 1 3 25 25 O 1.21281 * 118.25008 * 2.24995 * 24 2 1 26 26 H 1.08995 * 109.46885 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47185 * 299.98240 * 1 2 3 28 28 H 1.08997 * 109.46633 * 59.97819 * 1 2 3 29 29 H 1.08997 * 109.30320 * 281.23570 * 3 2 1 30 30 H 1.08998 * 109.30392 * 40.82021 * 3 2 1 31 31 H 1.09000 * 109.62042 * 291.02290 * 4 3 2 32 32 H 1.09006 * 109.60006 * 170.52930 * 4 3 2 33 33 H 1.08996 * 109.47301 * 329.99918 * 10 9 7 34 34 H 1.09004 * 109.47173 * 209.99869 * 10 9 7 35 35 H 0.97002 * 119.99856 * 179.97438 * 14 13 11 36 36 H 1.09002 * 109.47436 * 22.99468 * 19 9 7 37 37 H 1.08994 * 109.47116 * 142.99863 * 19 9 7 38 38 H 1.08996 * 109.47611 * 294.98029 * 20 19 9 39 39 H 1.09003 * 109.47352 * 54.98151 * 20 19 9 40 40 H 1.08998 * 109.39757 * 169.03351 * 23 5 4 41 41 H 1.09005 * 109.39906 * 288.85603 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1481 1.2876 0.0000 4 6 3.5949 1.1258 0.4686 5 6 4.2493 -0.0011 -0.3396 6 1 4.1093 0.1815 -1.4049 7 6 5.7217 -0.0624 -0.0245 8 8 6.1322 0.3531 1.0384 9 7 6.5824 -0.5789 -0.9239 10 6 8.0248 -0.5211 -0.6745 11 6 8.4556 -1.7576 0.0715 12 1 7.7276 -2.5110 0.3339 13 6 9.7789 -1.9267 0.4199 14 7 10.1548 -3.0055 1.0713 15 14 11.0379 -0.6232 -0.0334 16 1 11.1346 0.3740 1.0627 17 1 10.6180 0.0564 -1.2853 18 1 12.3619 -1.2639 -0.2381 19 6 6.0755 -1.1982 -2.1510 20 6 5.9996 -2.7147 -1.9631 21 6 5.3784 -3.3257 -3.1496 22 7 4.8990 -3.7971 -4.0652 23 6 3.5838 -1.3240 0.0482 24 6 2.0900 -1.1780 -0.0005 25 8 1.4159 -2.1853 -0.0429 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5136 0.8902 28 1 -0.3632 0.5142 -0.8898 29 1 2.1398 1.6998 -1.0090 30 1 1.6292 1.9707 0.6724 31 1 3.6101 0.8721 1.5286 32 1 4.1385 2.0564 0.3051 33 1 8.2554 0.3617 -0.0782 34 1 8.5560 -0.4665 -1.6248 35 1 11.0858 -3.1246 1.3160 36 1 5.0812 -0.8091 -2.3705 37 1 6.7466 -0.9678 -2.9783 38 1 7.0047 -3.1155 -1.8323 39 1 5.4002 -2.9421 -1.0816 40 1 3.8944 -2.1031 -0.6479 41 1 3.8869 -1.5992 1.0585 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195044118.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:03:19 Heat of formation + Delta-G solvation = -37.409356 kcal Electronic energy + Delta-G solvation = -24225.089564 eV Core-core repulsion = 20719.459590 eV Total energy + Delta-G solvation = -3505.629974 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.87272 -39.34572 -36.87722 -36.39725 -35.36390 -34.17939 -32.68028 -30.95840 -29.92638 -28.54197 -27.19304 -24.76001 -24.07075 -23.41732 -21.72888 -19.01430 -18.52557 -17.69223 -16.93755 -16.78735 -16.58992 -16.53818 -15.93808 -15.42790 -14.79682 -14.61749 -14.37755 -14.12765 -13.75457 -13.44429 -13.37684 -13.02975 -12.83796 -12.57432 -12.50202 -12.45063 -12.36800 -11.90680 -11.77934 -11.66133 -11.61969 -11.30408 -11.05638 -10.99731 -10.68889 -10.56044 -10.23145 -10.02519 -9.60219 -9.09283 -8.92186 -8.66624 -8.00733 -6.16513 -4.16532 2.52665 2.77737 2.85589 2.96417 3.10760 3.23251 3.28607 3.31385 3.48064 4.17274 4.32387 4.38854 4.46995 4.60712 4.69727 4.84611 5.04197 5.07612 5.16183 5.18007 5.21761 5.23049 5.28706 5.34444 5.49384 5.59073 5.64819 5.70510 5.78436 5.94234 6.05530 6.18195 6.25321 6.54276 6.79388 7.10715 7.25485 7.50197 7.71317 7.97690 8.02843 8.35085 8.71207 8.86037 9.43207 10.96075 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.016703 B = 0.004962 C = 0.004245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.973440 B = 5641.206949 C = 6594.196101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.609 5.609 3 C 0.115 3.885 4 C -0.117 4.117 5 C -0.116 4.116 6 H 0.098 0.902 7 C 0.516 3.484 8 O -0.523 6.523 9 N -0.591 5.591 10 C 0.214 3.786 11 C -0.533 4.533 12 H 0.080 0.920 13 C 0.075 3.925 14 N -0.893 5.893 15 Si 0.873 3.127 16 H -0.274 1.274 17 H -0.266 1.266 18 H -0.286 1.286 19 C 0.119 3.881 20 C -0.056 4.056 21 C 0.217 3.783 22 N -0.450 5.450 23 C -0.127 4.127 24 C 0.523 3.477 25 O -0.553 6.553 26 H 0.091 0.909 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.038 0.962 34 H 0.033 0.967 35 H 0.265 0.735 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.136 0.864 39 H 0.109 0.891 40 H 0.107 0.893 41 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.186 10.207 -4.441 18.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.343 5.343 3 C -0.008 4.008 4 C -0.155 4.155 5 C -0.138 4.138 6 H 0.116 0.884 7 C 0.302 3.698 8 O -0.399 6.399 9 N -0.322 5.322 10 C 0.094 3.906 11 C -0.571 4.571 12 H 0.098 0.902 13 C -0.128 4.128 14 N -0.531 5.531 15 Si 0.700 3.300 16 H -0.200 1.200 17 H -0.191 1.191 18 H -0.212 1.212 19 C -0.007 4.007 20 C -0.097 4.097 21 C -0.101 4.101 22 N -0.127 5.127 23 C -0.167 4.167 24 C 0.312 3.688 25 O -0.431 6.431 26 H 0.109 0.891 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.098 0.902 31 H 0.104 0.896 32 H 0.110 0.890 33 H 0.055 0.945 34 H 0.051 0.949 35 H 0.075 0.925 36 H 0.096 0.904 37 H 0.104 0.896 38 H 0.154 0.846 39 H 0.127 0.873 40 H 0.125 0.875 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -14.811 9.123 -5.173 18.148 hybrid contribution 1.070 0.723 0.205 1.308 sum -13.740 9.845 -4.968 17.619 Atomic orbital electron populations 1.21761 0.79737 1.04682 1.01164 1.47224 1.07474 1.06237 1.73380 1.21465 0.93225 0.84365 1.01755 1.21743 0.93266 0.99179 1.01324 1.21531 0.93865 0.96304 1.02067 0.88410 1.20089 0.86971 0.78608 0.84155 1.90715 1.78714 1.47751 1.22704 1.47928 1.08606 1.56451 1.19218 1.19764 0.74954 0.98892 0.97031 1.21303 0.94642 1.04400 1.36741 0.90220 1.24840 0.98278 0.95261 0.94396 1.69881 1.17380 1.26841 1.38989 0.86911 0.81303 0.82278 0.79518 1.19996 1.19050 1.21153 1.21364 1.00441 0.90302 0.88578 1.20059 1.03880 0.96015 0.89705 1.29273 0.92933 0.93459 0.94449 1.81183 1.10396 1.09357 1.11780 1.21748 0.90523 0.98128 1.06325 1.20080 0.90702 0.82751 0.75307 1.90709 1.66127 1.35791 1.50500 0.89050 0.92238 0.92294 0.91457 0.90249 0.89615 0.89011 0.94452 0.94885 0.92475 0.90382 0.89556 0.84629 0.87334 0.87468 0.86942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.60 10.48 59.85 0.63 1.22 16 2 N -0.61 -6.28 3.21 -182.85 -0.59 -6.87 16 3 C 0.11 0.88 6.40 -4.48 -0.03 0.85 16 4 C -0.12 -1.15 4.74 -26.59 -0.13 -1.28 16 5 C -0.12 -1.33 1.78 -91.56 -0.16 -1.50 16 6 H 0.10 0.91 6.21 -51.93 -0.32 0.59 16 7 C 0.52 8.37 6.75 -10.98 -0.07 8.30 16 8 O -0.52 -10.82 15.91 5.56 0.09 -10.73 16 9 N -0.59 -9.68 2.47 -175.06 -0.43 -10.11 16 10 C 0.21 4.43 4.22 -5.19 -0.02 4.40 16 11 C -0.53 -13.31 9.09 -34.44 -0.31 -13.62 16 12 H 0.08 2.14 7.88 -52.49 -0.41 1.73 16 13 C 0.08 2.00 5.47 -17.82 -0.10 1.91 16 14 N -0.89 -25.63 13.96 55.43 0.77 -24.86 16 15 Si 0.87 19.88 27.47 -169.99 -4.67 15.21 16 16 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 17 H -0.27 -5.62 6.54 56.52 0.37 -5.25 16 18 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 19 C 0.12 1.46 5.12 -4.04 -0.02 1.44 16 20 C -0.06 -0.72 5.32 -29.52 -0.16 -0.88 16 21 C 0.22 3.00 15.43 -20.76 -0.32 2.68 16 22 N -0.45 -7.27 18.54 42.15 0.78 -6.49 16 23 C -0.13 -1.58 5.28 -28.10 -0.15 -1.73 16 24 C 0.52 6.89 7.47 -11.87 -0.09 6.81 16 25 O -0.55 -9.26 15.95 5.56 0.09 -9.17 16 26 H 0.09 0.97 6.59 -51.93 -0.34 0.63 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.08 0.47 8.11 -51.93 -0.42 0.05 16 31 H 0.09 0.97 8.09 -51.93 -0.42 0.55 16 32 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.04 0.84 6.94 -51.93 -0.36 0.48 16 34 H 0.03 0.65 7.02 -51.93 -0.36 0.28 16 35 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 36 H 0.08 0.75 5.58 -51.93 -0.29 0.46 16 37 H 0.09 0.97 7.99 -51.93 -0.42 0.55 16 38 H 0.14 2.00 7.44 -51.93 -0.39 1.62 16 39 H 0.11 1.37 6.06 -51.93 -0.31 1.06 16 40 H 0.11 1.29 5.32 -51.93 -0.28 1.01 16 41 H 0.11 1.51 8.10 -51.93 -0.42 1.09 16 LS Contribution 338.00 15.07 5.09 5.09 Total: -1.00 -33.88 338.00 -5.40 -39.28 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -5.60 Total: 0.02 kcal Atomic # 6 Polarization: 9.55 SS G_CDS: -0.93 Total: 8.62 kcal Atomic # 7 Polarization: -48.86 SS G_CDS: 0.54 Total: -48.33 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: 0.18 Total: -19.90 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -4.67 Total: 15.21 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.88 -5.40 -39.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195044118.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.874 kcal (2) G-P(sol) polarization free energy of solvation -33.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds