Wall clock time and date at job start Tue Mar 31 2020 02:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46496 * 109.47650 * 2 1 4 4 C 1.46502 * 119.99834 * 275.04201 * 3 2 1 5 5 C 1.50692 * 109.47440 * 269.99596 * 4 3 2 6 6 H 1.08006 * 120.00216 * 0.02562 * 5 4 3 7 7 C 1.37879 * 120.00503 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99333 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00363 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47100 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47039 * 120.00088 * 9 7 5 12 12 H 1.48498 * 109.46856 * 240.00160 * 9 7 5 13 13 C 1.34772 * 119.99720 * 95.04167 * 3 2 1 14 14 O 1.21367 * 120.00048 * 174.86541 * 13 3 2 15 15 C 1.49303 * 120.00250 * 355.14060 * 13 3 2 16 16 O 1.21418 * 120.00201 * 276.10258 * 15 13 3 17 17 C 1.46929 * 119.99738 * 96.10258 * 15 13 3 18 18 C 1.41559 * 126.49450 * 354.43717 * 17 15 13 19 19 C 1.50704 * 126.00120 * 0.02562 * 18 17 15 20 20 N 1.30349 * 107.99468 * 180.02562 * 18 17 15 21 21 N 1.39905 * 109.04146 * 359.97438 * 20 18 17 22 22 C 1.46502 * 125.69361 * 180.02562 * 21 20 18 23 23 C 1.34123 * 108.60588 * 359.73452 * 21 20 18 24 24 C 1.50697 * 126.32945 * 180.28251 * 23 21 20 25 25 H 1.09006 * 109.47247 * 59.99773 * 1 2 3 26 26 H 1.08998 * 109.47444 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46887 * 300.00248 * 1 2 3 28 28 H 1.09010 * 109.46703 * 240.00034 * 2 1 3 29 29 H 1.09001 * 109.47073 * 120.00931 * 2 1 3 30 30 H 1.08994 * 109.47217 * 30.00712 * 4 3 2 31 31 H 1.09012 * 109.46415 * 149.99804 * 4 3 2 32 32 H 0.97001 * 119.99579 * 179.97438 * 8 7 5 33 33 H 1.09003 * 109.46604 * 93.53843 * 19 18 17 34 34 H 1.09004 * 109.47154 * 213.53114 * 19 18 17 35 35 H 1.08989 * 109.47372 * 333.53415 * 19 18 17 36 36 H 1.08998 * 109.47150 * 89.98376 * 22 21 20 37 37 H 1.09002 * 109.46858 * 209.97975 * 22 21 20 38 38 H 1.08995 * 109.47306 * 329.97579 * 22 21 20 39 39 H 1.09000 * 109.47165 * 270.16934 * 24 23 21 40 40 H 1.09000 * 109.47044 * 30.17033 * 24 23 21 41 41 H 1.08995 * 109.47186 * 150.17047 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1575 2.1089 -1.2639 5 6 3.5395 1.8867 -1.8221 6 1 4.2437 1.2651 -1.2890 7 6 3.9050 2.4768 -3.0134 8 7 3.0476 3.2340 -3.6622 9 14 5.6179 2.2007 -3.7057 10 1 6.3843 1.3156 -2.7922 11 1 5.5145 1.5616 -5.0421 12 1 6.3163 3.5050 -3.8333 13 6 2.3398 1.9822 1.1627 14 8 2.8317 3.0916 1.1566 15 6 2.0963 1.2807 2.4580 16 8 0.9995 1.3272 2.9768 17 6 3.1839 0.5342 3.1049 18 6 4.4747 0.2976 2.5739 19 6 4.9824 0.7700 1.2359 20 7 5.1470 -0.4004 3.4456 21 7 4.3362 -0.6421 4.5599 22 6 4.7282 -1.3924 5.7556 23 6 3.1424 -0.0667 4.3534 24 6 1.9713 -0.0752 5.3017 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8901 29 1 1.8933 -0.5140 0.8899 30 1 1.4156 1.7465 -1.9753 31 1 2.0032 3.1737 -1.0888 32 1 3.3049 3.6495 -4.5002 33 1 5.4979 1.7225 1.3586 34 1 5.6740 0.0324 0.8287 35 1 4.1426 0.8966 0.5527 36 1 5.1635 -0.7105 6.4860 37 1 3.8503 -1.8741 6.1862 38 1 5.4623 -2.1510 5.4841 39 1 1.3472 -0.9460 5.1005 40 1 2.3352 -0.1183 6.3282 41 1 1.3842 0.8325 5.1622 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264068392.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:58:32 Heat of formation + Delta-G solvation = 7.127322 kcal Electronic energy + Delta-G solvation = -24594.473754 eV Core-core repulsion = 21090.775035 eV Total energy + Delta-G solvation = -3503.698719 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.57393 -39.64901 -37.66581 -35.41170 -34.39564 -32.76150 -32.07747 -30.12560 -29.54079 -28.42296 -27.21840 -25.84855 -24.48214 -23.03518 -22.19212 -20.44905 -19.41599 -18.35954 -17.09201 -16.51582 -16.26175 -15.90914 -15.68226 -15.34431 -14.51410 -14.17385 -13.78481 -13.73491 -13.53573 -13.37200 -13.28327 -13.17713 -13.07653 -12.72823 -12.45596 -12.16038 -12.06632 -11.92384 -11.73074 -11.64942 -11.23251 -11.03296 -10.83059 -10.70270 -10.57334 -10.39663 -10.08060 -9.59370 -9.19632 -8.70222 -8.62849 -8.43826 -7.75671 -6.04876 -4.09632 1.17943 1.99878 2.22295 3.07240 3.15828 3.30889 3.39241 3.42209 3.59981 4.25879 4.35619 4.43640 4.60702 4.79970 4.82795 4.98670 5.09777 5.20810 5.28194 5.30402 5.36302 5.41832 5.64407 5.69207 5.80899 5.89078 6.06374 6.10506 6.17715 6.26584 6.27549 6.57344 6.69240 6.76904 6.97435 7.38543 7.46098 7.49628 7.66904 7.90838 8.19558 8.23322 8.73249 8.95864 9.55356 11.03504 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.018415 B = 0.005353 C = 0.004554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.147119 B = 5229.887658 C = 6147.347228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.102 3.898 3 N -0.582 5.582 4 C 0.244 3.756 5 C -0.528 4.528 6 H 0.066 0.934 7 C 0.063 3.937 8 N -0.893 5.893 9 Si 0.895 3.105 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.491 3.509 14 O -0.512 6.512 15 C 0.432 3.568 16 O -0.451 6.451 17 C -0.322 4.322 18 C 0.142 3.858 19 C -0.101 4.101 20 N -0.305 5.305 21 N -0.364 5.364 22 C 0.097 3.903 23 C 0.160 3.840 24 C -0.099 4.099 25 H 0.063 0.937 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.089 0.911 29 H 0.062 0.938 30 H 0.038 0.962 31 H 0.045 0.955 32 H 0.263 0.737 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.109 0.891 36 H 0.078 0.922 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.072 0.928 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.062 -11.649 16.524 20.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.021 4.021 3 N -0.315 5.315 4 C 0.125 3.875 5 C -0.567 4.567 6 H 0.084 0.916 7 C -0.139 4.139 8 N -0.532 5.532 9 Si 0.722 3.278 10 H -0.196 1.196 11 H -0.211 1.211 12 H -0.209 1.209 13 C 0.274 3.726 14 O -0.389 6.389 15 C 0.307 3.693 16 O -0.325 6.325 17 C -0.335 4.335 18 C -0.026 4.026 19 C -0.160 4.160 20 N -0.125 5.125 21 N -0.142 5.142 22 C -0.044 4.044 23 C 0.027 3.973 24 C -0.158 4.158 25 H 0.082 0.918 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.107 0.893 29 H 0.080 0.920 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.107 0.893 34 H 0.096 0.904 35 H 0.128 0.872 36 H 0.097 0.903 37 H 0.108 0.892 38 H 0.112 0.888 39 H 0.108 0.892 40 H 0.091 0.909 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.233 -11.577 16.999 20.568 hybrid contribution 0.353 0.185 -0.562 0.689 sum 0.120 -11.391 16.438 19.999 Atomic orbital electron populations 1.22217 0.96152 1.01611 1.02941 1.21516 0.94335 0.83592 1.02691 1.48394 1.62015 1.13491 1.07629 1.19408 0.97324 0.93018 0.77734 1.21496 0.98430 1.30713 1.06027 0.91621 1.24914 0.97390 0.94873 0.96731 1.69943 1.34891 1.31933 1.16408 0.86489 0.84349 0.78108 0.78805 1.19551 1.21055 1.20913 1.20316 0.79940 0.87182 0.85120 1.90791 1.42426 1.19402 1.86255 1.21581 0.86174 0.75344 0.86220 1.90513 1.24975 1.53014 1.64041 1.20411 0.98345 1.16500 0.98208 1.22806 0.90731 0.92800 0.96264 1.20838 1.04145 1.01776 0.89229 1.77170 1.17088 1.23375 0.94907 1.48310 1.09246 1.41136 1.15506 1.21940 1.02676 0.96355 0.83444 1.21779 0.88392 0.91981 0.95142 1.20693 0.93479 1.05836 0.95752 0.91781 0.92191 0.92298 0.89279 0.91972 0.94436 0.93714 0.92759 0.89330 0.90446 0.87243 0.90346 0.89241 0.88763 0.89211 0.90870 0.87860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.57 10.24 37.16 0.38 -2.19 16 2 C 0.10 1.74 5.90 -4.05 -0.02 1.72 16 3 N -0.58 -12.35 1.56 -175.63 -0.27 -12.63 16 4 C 0.24 6.15 5.14 -5.20 -0.03 6.12 16 5 C -0.53 -14.09 9.19 -34.44 -0.32 -14.41 16 6 H 0.07 1.69 5.91 -52.48 -0.31 1.38 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -25.80 13.29 55.43 0.74 -25.07 16 9 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 10 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 13 C 0.49 10.77 4.68 -11.66 -0.05 10.71 16 14 O -0.51 -13.10 16.72 5.48 0.09 -13.01 16 15 C 0.43 8.16 5.11 -31.46 -0.16 8.00 16 16 O -0.45 -8.42 15.29 5.44 0.08 -8.34 16 17 C -0.32 -5.46 5.94 -104.97 -0.62 -6.08 16 18 C 0.14 2.47 7.26 -81.95 -0.59 1.87 16 19 C -0.10 -1.84 9.47 36.01 0.34 -1.50 16 20 N -0.30 -4.89 12.48 33.94 0.42 -4.47 16 21 N -0.36 -4.61 3.97 -63.22 -0.25 -4.86 16 22 C 0.10 0.67 11.05 59.85 0.66 1.33 16 23 C 0.16 2.15 7.02 -81.45 -0.57 1.58 16 24 C -0.10 -0.94 9.29 36.00 0.33 -0.61 16 25 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.06 0.94 7.73 -51.93 -0.40 0.53 16 28 H 0.09 1.48 8.11 -51.92 -0.42 1.06 16 29 H 0.06 0.98 6.65 -51.93 -0.35 0.63 16 30 H 0.04 0.96 8.07 -51.93 -0.42 0.54 16 31 H 0.04 1.28 7.50 -51.92 -0.39 0.89 16 32 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 33 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 34 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 35 H 0.11 2.22 2.83 -51.94 -0.15 2.07 16 36 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.09 0.37 7.63 -51.93 -0.40 -0.02 16 38 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.07 0.47 7.71 -51.93 -0.40 0.07 16 41 H 0.10 1.15 6.66 -51.93 -0.35 0.81 16 LS Contribution 344.01 15.07 5.18 5.18 Total: -1.00 -33.58 344.01 -5.45 -39.03 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -5.67 Total: -0.15 kcal Atomic # 6 Polarization: 8.93 SS G_CDS: -0.75 Total: 8.18 kcal Atomic # 7 Polarization: -47.66 SS G_CDS: 0.64 Total: -47.02 kcal Atomic # 8 Polarization: -21.52 SS G_CDS: 0.17 Total: -21.35 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.58 -5.45 -39.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264068392.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.161 kcal (2) G-P(sol) polarization free energy of solvation -33.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds