Wall clock time and date at job start Tue Mar 31 2020 02:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46496 * 109.47650 * 2 1 4 4 C 1.46502 * 119.99834 * 275.04201 * 3 2 1 5 5 C 1.50692 * 109.47440 * 269.99596 * 4 3 2 6 6 H 1.08006 * 120.00216 * 0.02562 * 5 4 3 7 7 C 1.37879 * 120.00503 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99333 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00363 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47100 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47039 * 120.00088 * 9 7 5 12 12 H 1.48498 * 109.46856 * 240.00160 * 9 7 5 13 13 C 1.34772 * 119.99720 * 95.04167 * 3 2 1 14 14 O 1.21367 * 120.00048 * 174.86541 * 13 3 2 15 15 C 1.49303 * 120.00250 * 355.14060 * 13 3 2 16 16 O 1.21418 * 120.00201 * 276.10258 * 15 13 3 17 17 C 1.46929 * 119.99738 * 96.10258 * 15 13 3 18 18 C 1.41559 * 126.49450 * 354.43717 * 17 15 13 19 19 C 1.50704 * 126.00120 * 0.02562 * 18 17 15 20 20 N 1.30349 * 107.99468 * 180.02562 * 18 17 15 21 21 N 1.39905 * 109.04146 * 359.97438 * 20 18 17 22 22 C 1.46502 * 125.69361 * 180.02562 * 21 20 18 23 23 C 1.34123 * 108.60588 * 359.73452 * 21 20 18 24 24 C 1.50697 * 126.32945 * 180.28251 * 23 21 20 25 25 H 1.09006 * 109.47247 * 59.99773 * 1 2 3 26 26 H 1.08998 * 109.47444 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46887 * 300.00248 * 1 2 3 28 28 H 1.09010 * 109.46703 * 240.00034 * 2 1 3 29 29 H 1.09001 * 109.47073 * 120.00931 * 2 1 3 30 30 H 1.08994 * 109.47217 * 30.00712 * 4 3 2 31 31 H 1.09012 * 109.46415 * 149.99804 * 4 3 2 32 32 H 0.97001 * 119.99579 * 179.97438 * 8 7 5 33 33 H 1.09003 * 109.46604 * 93.53843 * 19 18 17 34 34 H 1.09004 * 109.47154 * 213.53114 * 19 18 17 35 35 H 1.08989 * 109.47372 * 333.53415 * 19 18 17 36 36 H 1.08998 * 109.47150 * 89.98376 * 22 21 20 37 37 H 1.09002 * 109.46858 * 209.97975 * 22 21 20 38 38 H 1.08995 * 109.47306 * 329.97579 * 22 21 20 39 39 H 1.09000 * 109.47165 * 270.16934 * 24 23 21 40 40 H 1.09000 * 109.47044 * 30.17033 * 24 23 21 41 41 H 1.08995 * 109.47186 * 150.17047 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1575 2.1089 -1.2639 5 6 3.5395 1.8867 -1.8221 6 1 4.2437 1.2651 -1.2890 7 6 3.9050 2.4768 -3.0134 8 7 3.0476 3.2340 -3.6622 9 14 5.6179 2.2007 -3.7057 10 1 6.3843 1.3156 -2.7922 11 1 5.5145 1.5616 -5.0421 12 1 6.3163 3.5050 -3.8333 13 6 2.3398 1.9822 1.1627 14 8 2.8317 3.0916 1.1566 15 6 2.0963 1.2807 2.4580 16 8 0.9995 1.3272 2.9768 17 6 3.1839 0.5342 3.1049 18 6 4.4747 0.2976 2.5739 19 6 4.9824 0.7700 1.2359 20 7 5.1470 -0.4004 3.4456 21 7 4.3362 -0.6421 4.5599 22 6 4.7282 -1.3924 5.7556 23 6 3.1424 -0.0667 4.3534 24 6 1.9713 -0.0752 5.3017 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8901 29 1 1.8933 -0.5140 0.8899 30 1 1.4156 1.7465 -1.9753 31 1 2.0032 3.1737 -1.0888 32 1 3.3049 3.6495 -4.5002 33 1 5.4979 1.7225 1.3586 34 1 5.6740 0.0324 0.8287 35 1 4.1426 0.8966 0.5527 36 1 5.1635 -0.7105 6.4860 37 1 3.8503 -1.8741 6.1862 38 1 5.4623 -2.1510 5.4841 39 1 1.3472 -0.9460 5.1005 40 1 2.3352 -0.1183 6.3282 41 1 1.3842 0.8325 5.1622 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264068392.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:58:31 Heat of formation + Delta-G solvation = -14.835807 kcal Electronic energy + Delta-G solvation = -24595.426146 eV Core-core repulsion = 21090.775035 eV Total energy + Delta-G solvation = -3504.651111 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.75448 -41.21794 -39.22879 -37.15541 -35.45818 -34.81250 -33.06884 -31.69901 -30.67819 -29.89756 -28.74229 -26.89663 -26.06650 -24.62727 -23.73355 -21.81617 -20.50906 -19.88095 -18.63430 -18.42091 -17.77089 -17.21073 -16.94512 -16.64499 -16.34392 -15.68349 -15.11450 -15.00138 -14.92308 -14.68005 -14.50098 -14.29753 -14.21804 -13.94861 -13.66718 -13.45507 -13.44756 -13.29745 -13.12133 -12.90036 -12.89627 -12.75858 -12.57749 -12.36072 -12.07756 -11.95965 -11.70532 -11.55894 -10.58702 -10.34920 -10.28418 -9.80929 -9.56333 -8.16401 -6.28753 -0.06277 0.75636 1.26797 1.42029 1.44035 1.47884 1.56377 1.74812 2.00627 2.44159 2.99200 3.16273 3.37071 3.47641 3.78515 3.92342 4.01170 4.23702 4.29230 4.34484 4.39240 4.53084 4.59551 4.60442 4.66773 4.71138 4.83962 4.89386 4.91675 4.94404 5.03291 5.05670 5.22259 5.32447 5.36131 5.58326 5.80861 5.81896 6.08015 6.11836 6.44415 6.48338 6.78483 7.05376 7.41209 8.92122 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.018415 B = 0.005353 C = 0.004554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.147119 B = 5229.887658 C = 6147.347228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.098 3.902 3 N -0.581 5.581 4 C 0.259 3.741 5 C -0.535 4.535 6 H 0.072 0.928 7 C 0.010 3.990 8 N -0.930 5.930 9 Si 0.960 3.040 10 H -0.259 1.259 11 H -0.274 1.274 12 H -0.286 1.286 13 C 0.484 3.516 14 O -0.563 6.563 15 C 0.442 3.558 16 O -0.455 6.455 17 C -0.356 4.356 18 C 0.127 3.873 19 C -0.098 4.098 20 N -0.319 5.319 21 N -0.351 5.351 22 C 0.081 3.919 23 C 0.183 3.817 24 C -0.099 4.099 25 H 0.051 0.949 26 H 0.097 0.903 27 H 0.049 0.951 28 H 0.093 0.907 29 H 0.079 0.921 30 H 0.031 0.969 31 H 0.000 1.000 32 H 0.265 0.735 33 H 0.073 0.927 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.097 0.903 37 H 0.127 0.873 38 H 0.102 0.898 39 H 0.113 0.887 40 H 0.114 0.886 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.556 -14.625 19.085 24.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.025 4.025 3 N -0.313 5.313 4 C 0.139 3.861 5 C -0.573 4.573 6 H 0.090 0.910 7 C -0.188 4.188 8 N -0.570 5.570 9 Si 0.785 3.215 10 H -0.183 1.183 11 H -0.200 1.200 12 H -0.212 1.212 13 C 0.270 3.730 14 O -0.443 6.443 15 C 0.318 3.682 16 O -0.330 6.330 17 C -0.369 4.369 18 C -0.040 4.040 19 C -0.156 4.156 20 N -0.140 5.140 21 N -0.129 5.129 22 C -0.057 4.057 23 C 0.047 3.953 24 C -0.156 4.156 25 H 0.070 0.930 26 H 0.115 0.885 27 H 0.068 0.932 28 H 0.111 0.889 29 H 0.098 0.902 30 H 0.049 0.951 31 H 0.018 0.982 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.108 0.892 35 H 0.105 0.895 36 H 0.116 0.884 37 H 0.146 0.854 38 H 0.120 0.880 39 H 0.131 0.869 40 H 0.132 0.868 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.275 -14.617 19.588 24.442 hybrid contribution 0.192 1.045 -1.213 1.612 sum 0.468 -13.573 18.375 22.849 Atomic orbital electron populations 1.22148 0.94341 1.03691 1.01834 1.21788 0.95771 0.81175 1.03717 1.48359 1.61724 1.14883 1.06325 1.18921 0.96868 0.90988 0.79367 1.21799 0.99035 1.30450 1.06049 0.90971 1.25784 1.01290 0.94579 0.97188 1.70068 1.36955 1.33041 1.16935 0.85464 0.79560 0.77952 0.78512 1.18287 1.19959 1.21240 1.21057 0.78767 0.86744 0.86476 1.90742 1.44706 1.21659 1.87234 1.21108 0.87011 0.75418 0.84635 1.90506 1.25151 1.53731 1.63619 1.20278 0.97634 1.18744 1.00266 1.22596 0.91318 0.93867 0.96257 1.20650 1.03335 1.01557 0.90099 1.77079 1.17895 1.23143 0.95876 1.48758 1.08378 1.40085 1.15649 1.22532 1.04966 0.96680 0.81544 1.22251 0.89429 0.89602 0.94031 1.20887 0.91945 1.05904 0.96890 0.93030 0.88458 0.93200 0.88862 0.90242 0.95080 0.98196 0.92622 0.90861 0.89171 0.89492 0.88428 0.85437 0.87957 0.86891 0.86784 0.89582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.75 10.24 71.98 0.74 -4.01 16 2 C 0.10 3.31 5.90 86.38 0.51 3.82 16 3 N -0.58 -25.67 1.56 -827.92 -1.29 -26.96 16 4 C 0.26 13.80 5.14 85.63 0.44 14.24 16 5 C -0.53 -29.53 9.19 25.60 0.24 -29.30 16 6 H 0.07 3.82 5.91 -2.91 -0.02 3.80 16 7 C 0.01 0.58 5.46 84.66 0.46 1.05 16 8 N -0.93 -55.51 13.29 21.45 0.28 -55.23 16 9 Si 0.96 43.97 29.54 68.60 2.03 46.00 16 10 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 11 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 12 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 13 C 0.48 22.20 4.68 87.22 0.41 22.60 16 14 O -0.56 -30.72 16.72 -3.30 -0.06 -30.77 16 15 C 0.44 16.81 5.11 27.53 0.14 16.95 16 16 O -0.45 -16.79 15.29 -3.46 -0.05 -16.85 16 17 C -0.36 -11.76 5.94 -20.09 -0.12 -11.88 16 18 C 0.13 4.37 7.26 43.60 0.32 4.69 16 19 C -0.10 -3.64 9.47 71.24 0.67 -2.97 16 20 N -0.32 -9.65 12.48 -46.55 -0.58 -10.23 16 21 N -0.35 -7.65 3.97 -353.93 -1.41 -9.06 16 22 C 0.08 0.72 11.05 127.77 1.41 2.13 16 23 C 0.18 4.34 7.02 42.30 0.30 4.64 16 24 C -0.10 -1.44 9.29 71.23 0.66 -0.78 16 25 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 26 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 27 H 0.05 1.55 7.73 -2.39 -0.02 1.53 16 28 H 0.09 3.07 8.11 -2.38 -0.02 3.05 16 29 H 0.08 2.44 6.65 -2.39 -0.02 2.42 16 30 H 0.03 1.68 8.07 -2.39 -0.02 1.66 16 31 H 0.00 0.00 7.50 -2.38 -0.02 -0.02 16 32 H 0.26 14.90 8.31 -92.71 -0.77 14.12 16 33 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16 34 H 0.09 2.98 8.14 -2.39 -0.02 2.96 16 35 H 0.09 3.64 2.83 -2.39 -0.01 3.63 16 36 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.13 0.24 7.63 -2.39 -0.02 0.22 16 38 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.11 0.76 7.71 -2.39 -0.02 0.75 16 41 H 0.09 1.67 6.66 -2.39 -0.02 1.65 16 Total: -1.00 -77.49 344.01 6.15 -71.34 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: 1.05 Total: 10.57 kcal Atomic # 6 Polarization: 15.01 SS G_CDS: 6.18 Total: 21.19 kcal Atomic # 7 Polarization: -98.49 SS G_CDS: -2.99 Total: -101.48 kcal Atomic # 8 Polarization: -47.51 SS G_CDS: -0.11 Total: -47.62 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -77.49 6.15 -71.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264068392.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.506 kcal (2) G-P(sol) polarization free energy of solvation -77.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds