Wall clock time and date at job start Tue Mar 31 2020 02:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08998 * 109.46713 * 2 1 4 4 N 1.46502 * 109.46945 * 240.00613 * 2 1 3 5 5 C 1.34773 * 120.00297 * 85.00119 * 4 2 1 6 6 O 1.21285 * 120.00017 * 359.97438 * 5 4 2 7 7 C 1.50701 * 120.00093 * 180.02562 * 5 4 2 8 8 C 1.55242 * 110.57841 * 294.87019 * 7 5 4 9 9 C 1.54886 * 102.58644 * 203.33841 * 8 7 5 10 10 C 1.54273 * 104.31440 * 37.93198 * 9 8 7 11 11 C 1.53868 * 106.59641 * 336.32477 * 10 9 8 12 12 C 1.50697 * 109.46985 * 120.00304 * 2 1 3 13 13 O 1.21292 * 120.00157 * 90.69209 * 12 2 1 14 14 N 1.34776 * 120.00040 * 270.68550 * 12 2 1 15 15 C 1.37098 * 120.00043 * 184.14448 * 14 12 2 16 16 H 1.07990 * 120.00192 * 346.63057 * 15 14 12 17 17 C 1.38952 * 119.99656 * 166.62568 * 15 14 12 18 18 N 1.31406 * 120.00506 * 334.30291 * 17 15 14 19 19 Si 1.86798 * 119.99596 * 154.29797 * 17 15 14 20 20 H 1.48503 * 109.47165 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.47130 * 120.00039 * 19 17 15 22 22 H 1.48501 * 109.47194 * 240.00245 * 19 17 15 23 23 C 1.46503 * 120.00008 * 4.14504 * 14 12 2 24 24 C 1.47196 * 109.47268 * 266.68231 * 23 14 12 25 25 N 4.18281 * 126.13628 * 32.98247 * 2 1 3 26 26 H 1.09003 * 109.46730 * 181.98679 * 1 2 3 27 27 H 1.08998 * 109.46927 * 301.98684 * 1 2 3 28 28 H 1.09000 * 109.46928 * 61.99177 * 1 2 3 29 29 H 0.97000 * 119.99764 * 264.99293 * 4 2 1 30 30 H 1.08996 * 110.43635 * 57.45216 * 7 5 4 31 31 H 1.08996 * 110.89458 * 85.04614 * 8 7 5 32 32 H 1.09004 * 110.76494 * 321.57033 * 8 7 5 33 33 H 1.08997 * 110.48638 * 279.18830 * 9 8 7 34 34 H 1.09003 * 110.48396 * 156.67488 * 9 8 7 35 35 H 1.09008 * 110.02805 * 95.60283 * 10 9 8 36 36 H 1.08997 * 110.03565 * 216.98721 * 10 9 8 37 37 H 1.09002 * 110.03485 * 119.28625 * 11 10 9 38 38 H 1.08999 * 110.03323 * 240.66488 * 11 10 9 39 39 H 0.96999 * 120.00615 * 180.02562 * 18 17 15 40 40 H 1.09001 * 109.46862 * 26.67881 * 23 14 12 41 41 H 1.08997 * 109.47295 * 146.67936 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1963 5 6 2.1471 -0.0181 -2.3572 6 8 1.8583 1.1586 -2.4117 7 6 2.6489 -0.7286 -3.5878 8 6 4.1193 -1.1864 -3.3922 9 6 4.6311 -1.3096 -4.8489 10 6 3.9705 -0.1267 -5.5866 11 6 2.7103 0.2428 -4.7848 12 6 2.0324 -0.7105 1.2304 13 8 2.2465 -1.9039 1.1967 14 7 2.2438 -0.0198 2.3683 15 6 2.7808 -0.6483 3.4620 16 1 2.8344 -1.7265 3.4929 17 6 3.2560 0.1019 4.5306 18 7 3.6658 1.3353 4.3369 19 14 3.3122 -0.6429 6.2428 20 1 2.7991 -2.0356 6.1939 21 1 4.7136 -0.6492 6.7341 22 1 2.4692 0.1638 7.1614 23 6 1.8999 1.4027 2.4364 24 6 3.0834 2.2104 2.0992 25 7 3.9967 2.8337 1.8390 26 1 -0.3633 -1.0271 0.0356 27 1 -0.3633 0.5444 0.8716 28 1 -0.3633 0.4826 -0.9073 29 1 2.2492 -1.6316 -1.1528 30 1 2.0119 -1.5817 -3.8211 31 1 4.1621 -2.1502 -2.8849 32 1 4.6885 -0.4350 -2.8450 33 1 4.3141 -2.2566 -5.2858 34 1 5.7170 -1.2204 -4.8805 35 1 4.6542 0.7217 -5.6192 36 1 3.6962 -0.4240 -6.5987 37 1 2.7823 1.2704 -4.4284 38 1 1.8236 0.1252 -5.4077 39 1 3.9980 1.8589 5.0828 40 1 1.0997 1.6173 1.7280 41 1 1.5678 1.6483 3.4451 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265044643.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:18 Heat of formation + Delta-G solvation = -47.910768 kcal Electronic energy + Delta-G solvation = -24037.222570 eV Core-core repulsion = 20531.137221 eV Total energy + Delta-G solvation = -3506.085349 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.15901 -38.96340 -37.09529 -35.92281 -34.62776 -34.11359 -32.10875 -30.75356 -28.84891 -28.60249 -27.49441 -25.50381 -23.64582 -21.71491 -20.53782 -19.64117 -19.21114 -18.08748 -17.57972 -16.41028 -16.11395 -15.92455 -15.46180 -14.96082 -14.64620 -14.36619 -14.10611 -13.71958 -13.44440 -13.37345 -13.05678 -12.78795 -12.33312 -12.11665 -11.93841 -11.83836 -11.52507 -11.41462 -11.33787 -11.22068 -11.18378 -11.16560 -11.05780 -10.82779 -10.57394 -10.49287 -10.41618 -10.38003 -9.54752 -9.36331 -8.99437 -8.60124 -8.18118 -6.60648 -4.07025 2.82673 2.99593 3.16670 3.22355 3.26368 3.61818 3.75756 4.03518 4.14898 4.43178 4.52211 4.65417 4.71800 4.82701 5.14791 5.19322 5.27732 5.36568 5.40118 5.42531 5.48631 5.52240 5.56730 5.60008 5.79118 5.84332 5.89331 5.97668 6.00074 6.08616 6.11376 6.22680 6.31579 6.36529 6.39986 6.70455 7.38487 7.71985 7.81744 8.15512 8.46989 8.84799 8.90230 9.08159 9.57108 10.43143 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.022579 B = 0.004061 C = 0.004011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.782776 B = 6893.881203 C = 6979.047721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.125 3.875 3 H 0.097 0.903 4 N -0.705 5.705 5 C 0.519 3.481 6 O -0.545 6.545 7 C -0.112 4.112 8 C -0.116 4.116 9 C -0.123 4.123 10 C -0.124 4.124 11 C -0.112 4.112 12 C 0.449 3.551 13 O -0.573 6.573 14 N -0.433 5.433 15 C -0.320 4.320 16 H 0.113 0.887 17 C 0.035 3.965 18 N -0.865 5.865 19 Si 0.926 3.074 20 H -0.266 1.266 21 H -0.282 1.282 22 H -0.277 1.277 23 C 0.219 3.781 24 C 0.248 3.752 25 N -0.468 5.468 26 H 0.064 0.936 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.408 0.592 30 H 0.099 0.901 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.084 0.916 38 H 0.065 0.935 39 H 0.276 0.724 40 H 0.088 0.912 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.174 -3.259 -12.222 13.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.016 3.984 3 H 0.115 0.885 4 N -0.358 5.358 5 C 0.306 3.694 6 O -0.422 6.422 7 C -0.134 4.134 8 C -0.154 4.154 9 C -0.160 4.160 10 C -0.162 4.162 11 C -0.150 4.150 12 C 0.237 3.763 13 O -0.456 6.456 14 N -0.152 5.152 15 C -0.447 4.447 16 H 0.131 0.869 17 C -0.170 4.170 18 N -0.503 5.503 19 Si 0.752 3.248 20 H -0.190 1.190 21 H -0.209 1.209 22 H -0.203 1.203 23 C 0.092 3.908 24 C -0.071 4.071 25 N -0.149 5.149 26 H 0.083 0.917 27 H 0.090 0.910 28 H 0.083 0.917 29 H 0.245 0.755 30 H 0.117 0.883 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.103 0.897 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.105 0.895 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -3.845 -1.943 -12.491 13.213 hybrid contribution -0.017 -0.822 1.242 1.489 sum -3.862 -2.765 -11.249 12.211 Atomic orbital electron populations 1.22095 0.93685 1.02900 1.02696 1.20815 0.95195 0.97614 0.84763 0.88526 1.45781 1.66639 1.14745 1.08591 1.20522 0.77223 0.87230 0.84474 1.90666 1.50482 1.16010 1.85055 1.22206 0.98286 0.99447 0.93432 1.22569 0.93473 1.01917 0.97432 1.22346 1.00231 0.98509 0.94947 1.22150 0.96995 0.98290 0.98780 1.22064 0.97756 1.00501 0.94636 1.19930 0.84611 0.88137 0.83667 1.90525 1.56916 1.14760 1.83437 1.43637 1.54144 1.06344 1.11085 1.19761 1.39044 0.93733 0.92170 0.86945 1.25284 0.95105 0.95836 1.00739 1.69762 1.37630 1.10607 1.32274 0.85874 0.78028 0.79595 0.81303 1.18967 1.20856 1.20307 1.18795 0.88351 0.79995 1.03664 1.28838 0.94796 0.93104 0.90326 1.80854 1.09747 1.10998 1.13261 0.91734 0.91032 0.91687 0.75528 0.88259 0.90566 0.90801 0.91452 0.91465 0.91747 0.91870 0.89712 0.91627 0.91335 0.89454 0.86316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.28 9.29 37.16 0.35 -1.93 16 2 C 0.12 2.23 2.12 -69.08 -0.15 2.09 16 3 H 0.10 1.86 5.83 -51.93 -0.30 1.56 16 4 N -0.71 -11.51 5.05 -54.93 -0.28 -11.79 16 5 C 0.52 8.21 7.10 -10.99 -0.08 8.13 16 6 O -0.54 -10.29 15.09 5.55 0.08 -10.20 16 7 C -0.11 -1.34 3.25 -89.92 -0.29 -1.63 16 8 C -0.12 -1.32 6.34 -24.55 -0.16 -1.47 16 9 C -0.12 -1.14 6.82 -25.07 -0.17 -1.31 16 10 C -0.12 -1.18 6.80 -25.61 -0.17 -1.36 16 11 C -0.11 -1.27 6.18 -25.62 -0.16 -1.43 16 12 C 0.45 9.72 6.80 -10.99 -0.07 9.64 16 13 O -0.57 -13.84 15.70 5.55 0.09 -13.76 16 14 N -0.43 -9.82 2.59 -117.94 -0.31 -10.12 16 15 C -0.32 -8.02 9.36 -14.93 -0.14 -8.16 16 16 H 0.11 2.97 7.34 -52.49 -0.39 2.59 16 17 C 0.04 0.85 4.83 -17.47 -0.08 0.76 16 18 N -0.87 -21.56 9.11 55.50 0.51 -21.06 16 19 Si 0.93 19.12 29.62 -169.99 -5.04 14.08 16 20 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 21 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 22 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 23 C 0.22 4.35 4.83 -6.83 -0.03 4.32 16 24 C 0.25 5.67 12.38 -20.76 -0.26 5.41 16 25 N -0.47 -11.66 18.54 42.15 0.78 -10.88 16 26 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.07 0.94 6.99 -51.93 -0.36 0.57 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.41 6.36 7.84 -40.82 -0.32 6.04 16 30 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.07 0.98 8.06 -51.93 -0.42 0.56 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.08 1.16 6.85 -51.93 -0.36 0.81 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.28 6.66 8.31 -40.82 -0.34 6.32 16 40 H 0.09 1.38 5.27 -51.93 -0.27 1.10 16 41 H 0.12 2.32 6.92 -51.93 -0.36 1.96 16 LS Contribution 339.82 15.07 5.12 5.12 Total: -1.00 -30.96 339.82 -6.18 -37.14 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -5.72 Total: 8.41 kcal Atomic # 6 Polarization: 14.47 SS G_CDS: -1.42 Total: 13.05 kcal Atomic # 7 Polarization: -54.55 SS G_CDS: 0.70 Total: -53.84 kcal Atomic # 8 Polarization: -24.13 SS G_CDS: 0.17 Total: -23.96 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.04 Total: 14.08 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.96 -6.18 -37.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265044643.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.771 kcal (2) G-P(sol) polarization free energy of solvation -30.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds