Wall clock time and date at job start Tue Mar 31 2020 02:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08998 * 109.46713 * 2 1 4 4 N 1.46502 * 109.46945 * 240.00613 * 2 1 3 5 5 C 1.34773 * 120.00297 * 85.00119 * 4 2 1 6 6 O 1.21285 * 120.00017 * 359.97438 * 5 4 2 7 7 C 1.50701 * 120.00093 * 180.02562 * 5 4 2 8 8 C 1.55242 * 110.57841 * 294.87019 * 7 5 4 9 9 C 1.54886 * 102.58644 * 203.33841 * 8 7 5 10 10 C 1.54273 * 104.31440 * 37.93198 * 9 8 7 11 11 C 1.53868 * 106.59641 * 336.32477 * 10 9 8 12 12 C 1.50697 * 109.46985 * 120.00304 * 2 1 3 13 13 O 1.21292 * 120.00157 * 90.69209 * 12 2 1 14 14 N 1.34776 * 120.00040 * 270.68550 * 12 2 1 15 15 C 1.37098 * 120.00043 * 184.14448 * 14 12 2 16 16 H 1.07990 * 120.00192 * 346.63057 * 15 14 12 17 17 C 1.38952 * 119.99656 * 166.62568 * 15 14 12 18 18 N 1.31406 * 120.00506 * 334.30291 * 17 15 14 19 19 Si 1.86798 * 119.99596 * 154.29797 * 17 15 14 20 20 H 1.48503 * 109.47165 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.47130 * 120.00039 * 19 17 15 22 22 H 1.48501 * 109.47194 * 240.00245 * 19 17 15 23 23 C 1.46503 * 120.00008 * 4.14504 * 14 12 2 24 24 C 1.47196 * 109.47268 * 266.68231 * 23 14 12 25 25 N 4.18281 * 126.13628 * 32.98247 * 2 1 3 26 26 H 1.09003 * 109.46730 * 181.98679 * 1 2 3 27 27 H 1.08998 * 109.46927 * 301.98684 * 1 2 3 28 28 H 1.09000 * 109.46928 * 61.99177 * 1 2 3 29 29 H 0.97000 * 119.99764 * 264.99293 * 4 2 1 30 30 H 1.08996 * 110.43635 * 57.45216 * 7 5 4 31 31 H 1.08996 * 110.89458 * 85.04614 * 8 7 5 32 32 H 1.09004 * 110.76494 * 321.57033 * 8 7 5 33 33 H 1.08997 * 110.48638 * 279.18830 * 9 8 7 34 34 H 1.09003 * 110.48396 * 156.67488 * 9 8 7 35 35 H 1.09008 * 110.02805 * 95.60283 * 10 9 8 36 36 H 1.08997 * 110.03565 * 216.98721 * 10 9 8 37 37 H 1.09002 * 110.03485 * 119.28625 * 11 10 9 38 38 H 1.08999 * 110.03323 * 240.66488 * 11 10 9 39 39 H 0.96999 * 120.00615 * 180.02562 * 18 17 15 40 40 H 1.09001 * 109.46862 * 26.67881 * 23 14 12 41 41 H 1.08997 * 109.47295 * 146.67936 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1963 5 6 2.1471 -0.0181 -2.3572 6 8 1.8583 1.1586 -2.4117 7 6 2.6489 -0.7286 -3.5878 8 6 4.1193 -1.1864 -3.3922 9 6 4.6311 -1.3096 -4.8489 10 6 3.9705 -0.1267 -5.5866 11 6 2.7103 0.2428 -4.7848 12 6 2.0324 -0.7105 1.2304 13 8 2.2465 -1.9039 1.1967 14 7 2.2438 -0.0198 2.3683 15 6 2.7808 -0.6483 3.4620 16 1 2.8344 -1.7265 3.4929 17 6 3.2560 0.1019 4.5306 18 7 3.6658 1.3353 4.3369 19 14 3.3122 -0.6429 6.2428 20 1 2.7991 -2.0356 6.1939 21 1 4.7136 -0.6492 6.7341 22 1 2.4692 0.1638 7.1614 23 6 1.8999 1.4027 2.4364 24 6 3.0834 2.2104 2.0992 25 7 3.9967 2.8337 1.8390 26 1 -0.3633 -1.0271 0.0356 27 1 -0.3633 0.5444 0.8716 28 1 -0.3633 0.4826 -0.9073 29 1 2.2492 -1.6316 -1.1528 30 1 2.0119 -1.5817 -3.8211 31 1 4.1621 -2.1502 -2.8849 32 1 4.6885 -0.4350 -2.8450 33 1 4.3141 -2.2566 -5.2858 34 1 5.7170 -1.2204 -4.8805 35 1 4.6542 0.7217 -5.6192 36 1 3.6962 -0.4240 -6.5987 37 1 2.7823 1.2704 -4.4284 38 1 1.8236 0.1252 -5.4077 39 1 3.9980 1.8589 5.0828 40 1 1.0997 1.6173 1.7280 41 1 1.5678 1.6483 3.4451 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265044643.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:17 Heat of formation + Delta-G solvation = -67.555082 kcal Electronic energy + Delta-G solvation = -24038.074411 eV Core-core repulsion = 20531.137221 eV Total energy + Delta-G solvation = -3506.937191 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.53287 -40.48404 -38.15125 -37.68082 -36.26759 -35.79817 -33.90426 -32.05510 -29.80383 -29.52571 -29.19766 -27.20918 -25.07286 -22.93786 -21.40838 -20.96798 -20.56839 -19.90995 -18.88125 -18.11984 -17.66276 -17.17740 -16.66570 -16.40628 -16.03680 -15.85204 -15.61180 -15.16100 -14.80532 -14.57518 -14.34676 -14.28020 -13.97663 -13.65414 -13.26523 -13.24475 -13.10019 -12.92216 -12.89884 -12.54893 -12.32445 -12.21124 -12.18926 -12.05984 -12.05762 -11.99064 -11.71510 -11.28580 -11.18213 -10.82208 -10.57436 -10.16610 -9.99507 -8.46550 -5.99469 1.30967 1.48084 1.56117 1.61430 1.70644 2.00083 2.18730 2.27569 2.38624 2.90716 3.05460 3.51284 3.55932 3.61442 3.72810 3.83181 4.07468 4.18739 4.27347 4.40821 4.47542 4.51306 4.58628 4.59786 4.70825 4.76770 4.79257 4.84927 4.94717 5.09864 5.19954 5.21145 5.26703 5.32174 5.42844 5.45445 5.49151 5.92196 6.29108 6.52781 7.01142 7.07789 7.18395 7.27621 7.77716 8.55583 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.022579 B = 0.004061 C = 0.004011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.782776 B = 6893.881203 C = 6979.047721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.130 3.870 3 H 0.084 0.916 4 N -0.706 5.706 5 C 0.516 3.484 6 O -0.578 6.578 7 C -0.107 4.107 8 C -0.119 4.119 9 C -0.116 4.116 10 C -0.122 4.122 11 C -0.112 4.112 12 C 0.449 3.551 13 O -0.602 6.602 14 N -0.445 5.445 15 C -0.346 4.346 16 H 0.091 0.909 17 C 0.008 3.992 18 N -0.885 5.885 19 Si 0.988 3.012 20 H -0.267 1.267 21 H -0.290 1.290 22 H -0.263 1.263 23 C 0.221 3.779 24 C 0.259 3.741 25 N -0.510 5.510 26 H 0.068 0.932 27 H 0.089 0.911 28 H 0.074 0.926 29 H 0.412 0.588 30 H 0.129 0.871 31 H 0.084 0.916 32 H 0.045 0.955 33 H 0.088 0.912 34 H 0.071 0.929 35 H 0.057 0.943 36 H 0.085 0.915 37 H 0.054 0.946 38 H 0.081 0.919 39 H 0.276 0.724 40 H 0.131 0.869 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.250 -4.111 -13.075 15.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.022 3.978 3 H 0.102 0.898 4 N -0.358 5.358 5 C 0.304 3.696 6 O -0.458 6.458 7 C -0.128 4.128 8 C -0.157 4.157 9 C -0.154 4.154 10 C -0.159 4.159 11 C -0.150 4.150 12 C 0.238 3.762 13 O -0.487 6.487 14 N -0.164 5.164 15 C -0.472 4.472 16 H 0.109 0.891 17 C -0.195 4.195 18 N -0.523 5.523 19 Si 0.812 3.188 20 H -0.191 1.191 21 H -0.217 1.217 22 H -0.188 1.188 23 C 0.094 3.906 24 C -0.058 4.058 25 N -0.192 5.192 26 H 0.087 0.913 27 H 0.108 0.892 28 H 0.092 0.908 29 H 0.249 0.751 30 H 0.147 0.853 31 H 0.103 0.897 32 H 0.064 0.936 33 H 0.107 0.893 34 H 0.090 0.910 35 H 0.076 0.924 36 H 0.104 0.896 37 H 0.073 0.927 38 H 0.099 0.901 39 H 0.087 0.913 40 H 0.149 0.851 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -4.930 -2.794 -13.354 14.507 hybrid contribution 0.346 -0.579 1.477 1.624 sum -4.583 -3.373 -11.877 13.170 Atomic orbital electron populations 1.22072 0.90809 1.03682 1.04043 1.20728 0.97306 0.96254 0.83559 0.89836 1.45849 1.66724 1.14890 1.08370 1.21234 0.76252 0.86931 0.85141 1.90649 1.51964 1.17576 1.85628 1.22310 0.98868 1.00100 0.91545 1.22587 0.92811 1.01353 0.98925 1.22347 1.00501 0.99401 0.93139 1.22149 0.95893 0.98238 0.99638 1.22069 0.99536 0.98604 0.94782 1.20587 0.83350 0.87890 0.84352 1.90499 1.57834 1.16205 1.84116 1.43764 1.54253 1.07346 1.11038 1.19687 1.40604 0.93139 0.93813 0.89134 1.25926 0.94204 0.96085 1.03253 1.69834 1.38006 1.11504 1.32960 0.84960 0.77509 0.78890 0.77421 1.19134 1.21651 1.18788 1.19116 0.88110 0.78129 1.05251 1.29461 0.94829 0.92423 0.89086 1.80846 1.11046 1.12421 1.14839 0.91280 0.89213 0.90751 0.75068 0.85343 0.89734 0.93604 0.89307 0.91024 0.92383 0.89633 0.92712 0.90075 0.91331 0.85149 0.85806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.04 9.29 71.99 0.67 -3.37 16 2 C 0.13 4.56 2.12 44.25 0.09 4.66 16 3 H 0.08 3.17 5.83 -2.39 -0.01 3.16 16 4 N -0.71 -22.61 5.05 -446.08 -2.25 -24.86 16 5 C 0.52 16.03 7.10 87.66 0.62 16.65 16 6 O -0.58 -21.87 15.09 -3.05 -0.05 -21.91 16 7 C -0.11 -2.40 3.25 -10.34 -0.03 -2.43 16 8 C -0.12 -2.57 6.34 32.01 0.20 -2.37 16 9 C -0.12 -1.89 6.82 31.67 0.22 -1.67 16 10 C -0.12 -2.06 6.80 31.32 0.21 -1.84 16 11 C -0.11 -2.39 6.18 31.32 0.19 -2.20 16 12 C 0.45 19.37 6.80 87.66 0.60 19.97 16 13 O -0.60 -29.22 15.70 -3.07 -0.05 -29.27 16 14 N -0.44 -20.12 2.59 -645.43 -1.67 -21.79 16 15 C -0.35 -17.42 9.36 84.04 0.79 -16.63 16 16 H 0.09 4.90 7.34 -2.92 -0.02 4.87 16 17 C 0.01 0.40 4.83 84.93 0.41 0.81 16 18 N -0.89 -43.98 9.11 21.66 0.20 -43.78 16 19 Si 0.99 38.98 29.62 68.60 2.03 41.01 16 20 H -0.27 -10.52 7.11 99.48 0.71 -9.81 16 21 H -0.29 -11.76 7.11 99.48 0.71 -11.06 16 22 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 23 C 0.22 8.56 4.83 84.57 0.41 8.97 16 24 C 0.26 11.89 12.38 89.44 1.11 13.00 16 25 N -0.51 -25.70 18.54 20.00 0.37 -25.33 16 26 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.09 2.10 6.99 -2.39 -0.02 2.09 16 28 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.41 12.58 7.84 -92.71 -0.73 11.85 16 30 H 0.13 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.05 1.23 8.06 -2.39 -0.02 1.21 16 33 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 36 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.05 1.51 6.85 -2.39 -0.02 1.49 16 38 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.28 13.26 8.31 -92.71 -0.77 12.49 16 40 H 0.13 3.87 5.27 -2.39 -0.01 3.86 16 41 H 0.12 4.72 6.92 -2.39 -0.02 4.70 16 Total: -1.00 -67.72 339.82 4.40 -63.32 By element: Atomic # 1 Polarization: 28.74 SS G_CDS: 0.33 Total: 29.07 kcal Atomic # 6 Polarization: 28.06 SS G_CDS: 5.49 Total: 33.54 kcal Atomic # 7 Polarization: -112.41 SS G_CDS: -3.36 Total: -115.76 kcal Atomic # 8 Polarization: -51.09 SS G_CDS: -0.09 Total: -51.19 kcal Atomic # 14 Polarization: 38.98 SS G_CDS: 2.03 Total: 41.01 kcal Total: -67.72 4.40 -63.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265044643.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.234 kcal (2) G-P(sol) polarization free energy of solvation -67.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds