Wall clock time and date at job start Tue Mar 31 2020 02:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47430 * 2 1 4 4 N 1.46498 * 109.47163 * 120.00692 * 2 1 3 5 5 C 1.34783 * 119.99928 * 274.99663 * 4 2 1 6 6 O 1.21283 * 119.99499 * 359.97438 * 5 4 2 7 7 C 1.50695 * 120.00114 * 180.02562 * 5 4 2 8 8 C 1.54258 * 110.03313 * 297.90521 * 7 5 4 9 9 C 1.54968 * 104.16390 * 217.13580 * 8 7 5 10 10 C 1.54888 * 102.77154 * 37.89113 * 9 8 7 11 11 C 1.53877 * 110.03305 * 180.68842 * 7 5 4 12 12 C 1.50702 * 109.46643 * 240.00046 * 2 1 3 13 13 O 1.21286 * 120.00344 * 267.95127 * 12 2 1 14 14 N 1.34781 * 119.99731 * 87.95833 * 12 2 1 15 15 C 1.37102 * 119.99827 * 183.77569 * 14 12 2 16 16 H 1.07996 * 119.99702 * 18.01555 * 15 14 12 17 17 C 1.38948 * 119.99667 * 198.28986 * 15 14 12 18 18 N 1.31414 * 120.00128 * 18.22833 * 17 15 14 19 19 Si 1.86799 * 119.99858 * 198.22629 * 17 15 14 20 20 H 1.48494 * 109.47063 * 60.00232 * 19 17 15 21 21 H 1.48501 * 109.47283 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47068 * 300.00304 * 19 17 15 23 23 C 1.46500 * 119.99954 * 3.77342 * 14 12 2 24 24 C 1.47201 * 109.47113 * 83.59692 * 23 14 12 25 25 N 4.03959 * 130.77134 * 329.19715 * 2 1 3 26 26 H 1.09002 * 109.46887 * 305.37524 * 1 2 3 27 27 H 1.09002 * 109.47446 * 65.37176 * 1 2 3 28 28 H 1.08997 * 109.47430 * 185.37501 * 1 2 3 29 29 H 0.97003 * 120.00467 * 94.99410 * 4 2 1 30 30 H 1.08996 * 110.01670 * 59.30214 * 7 5 4 31 31 H 1.09000 * 110.48850 * 335.78970 * 8 7 5 32 32 H 1.09007 * 110.48698 * 98.42883 * 8 7 5 33 33 H 1.09004 * 110.72003 * 279.57896 * 9 8 7 34 34 H 1.08998 * 110.92487 * 156.29428 * 9 8 7 35 35 H 1.09004 * 110.48150 * 203.40853 * 10 9 8 36 36 H 1.08997 * 110.60413 * 80.82114 * 10 9 8 37 37 H 1.08999 * 110.03617 * 238.57156 * 11 7 5 38 38 H 1.09002 * 110.03053 * 0.02562 * 11 7 5 39 39 H 0.97000 * 120.00085 * 179.97438 * 18 17 15 40 40 H 1.08996 * 109.46963 * 203.59519 * 23 14 12 41 41 H 1.08998 * 109.47029 * 323.59952 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1471 -0.0185 2.3571 6 8 1.8591 1.1584 2.4115 7 6 2.6500 -0.7288 3.5874 8 6 1.6795 -1.8629 3.9765 9 6 1.6765 -1.8444 5.5261 10 6 1.7425 -0.3313 5.8506 11 6 2.6906 0.2445 4.7785 12 6 2.0322 -0.7104 -1.2305 13 8 2.2697 -1.8991 -1.1901 14 7 2.2176 -0.0248 -2.3760 15 6 2.6000 -0.6843 -3.5155 16 1 2.4748 -1.7546 -3.5876 17 6 3.1539 0.0235 -4.5751 18 7 3.6412 1.2278 -4.3775 19 14 3.2058 -0.7369 -6.2806 20 1 1.8228 -1.0347 -6.7320 21 1 3.8421 0.2139 -7.2273 22 1 3.9943 -1.9946 -6.2380 23 6 2.0103 1.4252 -2.4035 24 6 3.2281 2.1040 -1.9311 25 7 4.1680 2.6277 -1.5666 26 1 -0.3633 0.5950 0.8380 27 1 -0.3634 0.4283 -0.9342 28 1 -0.3634 -1.0231 0.0963 29 1 2.2490 -1.6319 1.1525 30 1 3.6445 -1.1351 3.4032 31 1 0.6805 -1.6594 3.5908 32 1 2.0444 -2.8211 3.6064 33 1 2.5511 -2.3624 5.9197 34 1 0.7597 -2.2840 5.9189 35 1 2.1531 -0.1727 6.8478 36 1 0.7545 0.1218 5.7693 37 1 3.7046 0.3099 5.1730 38 1 2.3461 1.2306 4.4668 39 1 4.0282 1.7218 -5.1172 40 1 1.7904 1.7415 -3.4231 41 1 1.1744 1.6851 -1.7540 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265044647.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:21 Heat of formation + Delta-G solvation = -49.136684 kcal Electronic energy + Delta-G solvation = -24021.971195 eV Core-core repulsion = 20515.832686 eV Total energy + Delta-G solvation = -3506.138509 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.20998 -38.98284 -37.05823 -35.93734 -34.71273 -34.19030 -32.06781 -30.74933 -28.84387 -28.61007 -27.53468 -25.45383 -23.61245 -21.67662 -20.77114 -19.56401 -19.19673 -18.03812 -17.58993 -16.50159 -16.07504 -16.00387 -15.28329 -14.96715 -14.73793 -14.47054 -13.98628 -13.92536 -13.48413 -13.19124 -13.06620 -12.79399 -12.46624 -12.11226 -11.84143 -11.71650 -11.58604 -11.47908 -11.36413 -11.22181 -11.21304 -11.15850 -11.07348 -10.86181 -10.61266 -10.57527 -10.49557 -10.41300 -9.54544 -9.35712 -8.99824 -8.58495 -8.15566 -6.57466 -4.10776 2.83781 3.03669 3.15995 3.18582 3.26337 3.59326 3.70264 3.96981 4.06251 4.40378 4.51444 4.64708 4.70399 4.83914 5.12787 5.15108 5.29264 5.35318 5.36070 5.44134 5.50350 5.53639 5.55309 5.58904 5.74860 5.80870 5.90775 5.97773 6.02828 6.07958 6.09747 6.20152 6.31452 6.39581 6.48458 6.70925 7.38025 7.73457 7.82167 8.16339 8.46935 8.72084 8.87001 9.07686 9.57469 10.47601 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.027506 B = 0.003953 C = 0.003709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.721765 B = 7081.681624 C = 7547.829006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.125 3.875 3 H 0.096 0.904 4 N -0.706 5.706 5 C 0.519 3.481 6 O -0.544 6.544 7 C -0.113 4.113 8 C -0.115 4.115 9 C -0.123 4.123 10 C -0.123 4.123 11 C -0.119 4.119 12 C 0.449 3.551 13 O -0.572 6.572 14 N -0.433 5.433 15 C -0.315 4.315 16 H 0.110 0.890 17 C 0.033 3.967 18 N -0.877 5.877 19 Si 0.932 3.068 20 H -0.271 1.271 21 H -0.284 1.284 22 H -0.273 1.273 23 C 0.217 3.783 24 C 0.243 3.757 25 N -0.467 5.467 26 H 0.064 0.936 27 H 0.072 0.928 28 H 0.063 0.937 29 H 0.408 0.592 30 H 0.098 0.902 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.090 0.910 39 H 0.276 0.724 40 H 0.134 0.866 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.200 -3.096 12.388 14.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.016 3.984 3 H 0.114 0.886 4 N -0.358 5.358 5 C 0.305 3.695 6 O -0.422 6.422 7 C -0.135 4.135 8 C -0.153 4.153 9 C -0.161 4.161 10 C -0.161 4.161 11 C -0.157 4.157 12 C 0.236 3.764 13 O -0.455 6.455 14 N -0.152 5.152 15 C -0.442 4.442 16 H 0.127 0.873 17 C -0.171 4.171 18 N -0.515 5.515 19 Si 0.759 3.241 20 H -0.196 1.196 21 H -0.209 1.209 22 H -0.198 1.198 23 C 0.089 3.911 24 C -0.075 4.075 25 N -0.147 5.147 26 H 0.083 0.917 27 H 0.090 0.910 28 H 0.082 0.918 29 H 0.245 0.755 30 H 0.116 0.884 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.109 0.891 39 H 0.087 0.913 40 H 0.152 0.848 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.793 -1.924 12.806 14.187 hybrid contribution 0.118 -0.828 -1.277 1.526 sum -5.674 -2.752 11.530 13.142 Atomic orbital electron populations 1.22065 0.93572 1.02838 1.02775 1.20811 0.95258 0.97610 0.84715 0.88563 1.45783 1.66723 1.14747 1.08551 1.20551 0.77338 0.87171 0.84444 1.90646 1.50687 1.16009 1.84814 1.21933 1.00929 0.97051 0.93556 1.22373 0.99262 0.97348 0.96313 1.22509 1.01778 0.96634 0.95160 1.22358 0.99940 0.95357 0.98437 1.22163 0.99936 1.00226 0.93363 1.20006 0.84435 0.88225 0.83687 1.90524 1.56034 1.15466 1.83520 1.43565 1.58712 1.04361 1.08571 1.19722 1.40005 0.94750 0.89724 0.87279 1.25335 0.94786 0.96200 1.00780 1.69837 1.35976 1.12747 1.32966 0.85887 0.78788 0.78795 0.80667 1.19575 1.20904 1.19768 1.18862 0.87401 0.80953 1.03862 1.29217 0.94959 0.92905 0.90457 1.80905 1.10492 1.10297 1.12972 0.91684 0.90961 0.91788 0.75506 0.88425 0.90997 0.90722 0.91349 0.91435 0.91711 0.91566 0.91584 0.89112 0.91349 0.84849 0.89791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 9.26 37.16 0.34 -1.94 16 2 C 0.12 2.26 2.14 -69.08 -0.15 2.11 16 3 H 0.10 1.87 5.47 -51.93 -0.28 1.58 16 4 N -0.71 -11.70 4.99 -54.93 -0.27 -11.97 16 5 C 0.52 8.31 6.96 -10.98 -0.08 8.23 16 6 O -0.54 -10.34 14.87 5.56 0.08 -10.26 16 7 C -0.11 -1.38 3.29 -90.66 -0.30 -1.68 16 8 C -0.12 -1.15 6.29 -25.03 -0.16 -1.31 16 9 C -0.12 -1.05 6.91 -24.70 -0.17 -1.22 16 10 C -0.12 -1.16 6.83 -25.07 -0.17 -1.33 16 11 C -0.12 -1.37 6.40 -25.61 -0.16 -1.54 16 12 C 0.45 9.84 6.74 -10.98 -0.07 9.76 16 13 O -0.57 -14.01 15.73 5.55 0.09 -13.92 16 14 N -0.43 -9.87 2.60 -117.94 -0.31 -10.17 16 15 C -0.32 -7.86 9.32 -14.93 -0.14 -8.00 16 16 H 0.11 2.84 7.40 -52.49 -0.39 2.45 16 17 C 0.03 0.80 4.95 -17.47 -0.09 0.71 16 18 N -0.88 -21.72 9.34 55.50 0.52 -21.20 16 19 Si 0.93 19.14 29.59 -169.99 -5.03 14.11 16 20 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 21 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 22 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 23 C 0.22 4.33 4.78 -6.83 -0.03 4.30 16 24 C 0.24 5.55 12.83 -20.76 -0.27 5.28 16 25 N -0.47 -11.54 18.54 42.15 0.78 -10.76 16 26 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.07 0.98 7.39 -51.93 -0.38 0.60 16 28 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.41 6.48 7.80 -40.82 -0.32 6.16 16 30 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.07 0.76 7.85 -51.93 -0.41 0.36 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.09 1.26 6.39 -51.93 -0.33 0.93 16 39 H 0.28 6.64 8.31 -40.82 -0.34 6.30 16 40 H 0.13 2.69 6.36 -51.93 -0.33 2.36 16 41 H 0.08 1.34 5.87 -51.93 -0.30 1.03 16 LS Contribution 339.83 15.07 5.12 5.12 Total: -1.00 -30.80 339.83 -6.15 -36.95 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -5.69 Total: 8.72 kcal Atomic # 6 Polarization: 14.82 SS G_CDS: -1.44 Total: 13.38 kcal Atomic # 7 Polarization: -54.82 SS G_CDS: 0.72 Total: -54.10 kcal Atomic # 8 Polarization: -24.35 SS G_CDS: 0.17 Total: -24.18 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.03 Total: 14.11 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.80 -6.15 -36.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265044647.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.191 kcal (2) G-P(sol) polarization free energy of solvation -30.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds