Wall clock time and date at job start Tue Mar 31 2020 02:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47430 * 2 1 4 4 N 1.46498 * 109.47163 * 120.00692 * 2 1 3 5 5 C 1.34783 * 119.99928 * 274.99663 * 4 2 1 6 6 O 1.21283 * 119.99499 * 359.97438 * 5 4 2 7 7 C 1.50695 * 120.00114 * 180.02562 * 5 4 2 8 8 C 1.54258 * 110.03313 * 297.90521 * 7 5 4 9 9 C 1.54968 * 104.16390 * 217.13580 * 8 7 5 10 10 C 1.54888 * 102.77154 * 37.89113 * 9 8 7 11 11 C 1.53877 * 110.03305 * 180.68842 * 7 5 4 12 12 C 1.50702 * 109.46643 * 240.00046 * 2 1 3 13 13 O 1.21286 * 120.00344 * 267.95127 * 12 2 1 14 14 N 1.34781 * 119.99731 * 87.95833 * 12 2 1 15 15 C 1.37102 * 119.99827 * 183.77569 * 14 12 2 16 16 H 1.07996 * 119.99702 * 18.01555 * 15 14 12 17 17 C 1.38948 * 119.99667 * 198.28986 * 15 14 12 18 18 N 1.31414 * 120.00128 * 18.22833 * 17 15 14 19 19 Si 1.86799 * 119.99858 * 198.22629 * 17 15 14 20 20 H 1.48494 * 109.47063 * 60.00232 * 19 17 15 21 21 H 1.48501 * 109.47283 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47068 * 300.00304 * 19 17 15 23 23 C 1.46500 * 119.99954 * 3.77342 * 14 12 2 24 24 C 1.47201 * 109.47113 * 83.59692 * 23 14 12 25 25 N 4.03959 * 130.77134 * 329.19715 * 2 1 3 26 26 H 1.09002 * 109.46887 * 305.37524 * 1 2 3 27 27 H 1.09002 * 109.47446 * 65.37176 * 1 2 3 28 28 H 1.08997 * 109.47430 * 185.37501 * 1 2 3 29 29 H 0.97003 * 120.00467 * 94.99410 * 4 2 1 30 30 H 1.08996 * 110.01670 * 59.30214 * 7 5 4 31 31 H 1.09000 * 110.48850 * 335.78970 * 8 7 5 32 32 H 1.09007 * 110.48698 * 98.42883 * 8 7 5 33 33 H 1.09004 * 110.72003 * 279.57896 * 9 8 7 34 34 H 1.08998 * 110.92487 * 156.29428 * 9 8 7 35 35 H 1.09004 * 110.48150 * 203.40853 * 10 9 8 36 36 H 1.08997 * 110.60413 * 80.82114 * 10 9 8 37 37 H 1.08999 * 110.03617 * 238.57156 * 11 7 5 38 38 H 1.09002 * 110.03053 * 0.02562 * 11 7 5 39 39 H 0.97000 * 120.00085 * 179.97438 * 18 17 15 40 40 H 1.08996 * 109.46963 * 203.59519 * 23 14 12 41 41 H 1.08998 * 109.47029 * 323.59952 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1471 -0.0185 2.3571 6 8 1.8591 1.1584 2.4115 7 6 2.6500 -0.7288 3.5874 8 6 1.6795 -1.8629 3.9765 9 6 1.6765 -1.8444 5.5261 10 6 1.7425 -0.3313 5.8506 11 6 2.6906 0.2445 4.7785 12 6 2.0322 -0.7104 -1.2305 13 8 2.2697 -1.8991 -1.1901 14 7 2.2176 -0.0248 -2.3760 15 6 2.6000 -0.6843 -3.5155 16 1 2.4748 -1.7546 -3.5876 17 6 3.1539 0.0235 -4.5751 18 7 3.6412 1.2278 -4.3775 19 14 3.2058 -0.7369 -6.2806 20 1 1.8228 -1.0347 -6.7320 21 1 3.8421 0.2139 -7.2273 22 1 3.9943 -1.9946 -6.2380 23 6 2.0103 1.4252 -2.4035 24 6 3.2281 2.1040 -1.9311 25 7 4.1680 2.6277 -1.5666 26 1 -0.3633 0.5950 0.8380 27 1 -0.3634 0.4283 -0.9342 28 1 -0.3634 -1.0231 0.0963 29 1 2.2490 -1.6319 1.1525 30 1 3.6445 -1.1351 3.4032 31 1 0.6805 -1.6594 3.5908 32 1 2.0444 -2.8211 3.6064 33 1 2.5511 -2.3624 5.9197 34 1 0.7597 -2.2840 5.9189 35 1 2.1531 -0.1727 6.8478 36 1 0.7545 0.1218 5.7693 37 1 3.7046 0.3099 5.1730 38 1 2.3461 1.2306 4.4668 39 1 4.0282 1.7218 -5.1172 40 1 1.7904 1.7415 -3.4231 41 1 1.1744 1.6851 -1.7540 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265044647.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:20 Heat of formation + Delta-G solvation = -68.476030 kcal Electronic energy + Delta-G solvation = -24022.809812 eV Core-core repulsion = 20515.832686 eV Total energy + Delta-G solvation = -3506.977126 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.57198 -40.51857 -38.10303 -37.69754 -36.39658 -35.83159 -33.85864 -32.05407 -29.78402 -29.48322 -29.25254 -27.16254 -25.05422 -22.89654 -21.54343 -20.94888 -20.55397 -19.85307 -18.88449 -18.15471 -17.65293 -17.27271 -16.50989 -16.39050 -16.04093 -15.93628 -15.51179 -15.38503 -14.84782 -14.45618 -14.36744 -14.17252 -14.04360 -13.69776 -13.33633 -13.29974 -13.14751 -12.92142 -12.68547 -12.52539 -12.37261 -12.26286 -12.21135 -12.13512 -12.00327 -11.92147 -11.64619 -11.39629 -11.16702 -10.81819 -10.58392 -10.14084 -9.99154 -8.42383 -6.02636 1.35077 1.48707 1.56369 1.58795 1.68818 1.94627 2.13599 2.18344 2.35138 2.94359 3.02897 3.48461 3.51216 3.66759 3.71979 3.82437 4.07096 4.17935 4.28308 4.45905 4.47695 4.55466 4.57446 4.68512 4.71710 4.80799 4.83266 4.86741 5.00296 5.11233 5.19133 5.25407 5.25626 5.30523 5.45076 5.45929 5.49242 5.94589 6.30672 6.51313 6.90621 7.02966 7.16908 7.26989 7.77531 8.60473 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.027506 B = 0.003953 C = 0.003709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.721765 B = 7081.681624 C = 7547.829006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.131 3.869 3 H 0.084 0.916 4 N -0.706 5.706 5 C 0.516 3.484 6 O -0.577 6.577 7 C -0.112 4.112 8 C -0.113 4.113 9 C -0.116 4.116 10 C -0.121 4.121 11 C -0.121 4.121 12 C 0.448 3.552 13 O -0.602 6.602 14 N -0.444 5.444 15 C -0.341 4.341 16 H 0.091 0.909 17 C 0.005 3.995 18 N -0.895 5.895 19 Si 0.992 3.008 20 H -0.257 1.257 21 H -0.281 1.281 22 H -0.281 1.281 23 C 0.218 3.782 24 C 0.254 3.746 25 N -0.506 5.506 26 H 0.074 0.926 27 H 0.087 0.913 28 H 0.068 0.932 29 H 0.412 0.588 30 H 0.108 0.892 31 H 0.063 0.937 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.059 0.941 37 H 0.076 0.924 38 H 0.062 0.938 39 H 0.276 0.724 40 H 0.135 0.865 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.153 -3.856 13.107 15.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.022 3.978 3 H 0.102 0.898 4 N -0.359 5.359 5 C 0.304 3.696 6 O -0.457 6.457 7 C -0.133 4.133 8 C -0.151 4.151 9 C -0.154 4.154 10 C -0.158 4.158 11 C -0.159 4.159 12 C 0.236 3.764 13 O -0.487 6.487 14 N -0.163 5.163 15 C -0.468 4.468 16 H 0.109 0.891 17 C -0.197 4.197 18 N -0.534 5.534 19 Si 0.816 3.184 20 H -0.182 1.182 21 H -0.206 1.206 22 H -0.207 1.207 23 C 0.092 3.908 24 C -0.063 4.063 25 N -0.187 5.187 26 H 0.093 0.907 27 H 0.106 0.894 28 H 0.087 0.913 29 H 0.249 0.751 30 H 0.126 0.874 31 H 0.082 0.918 32 H 0.106 0.894 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.078 0.922 37 H 0.095 0.905 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.153 0.847 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -6.759 -2.682 13.538 15.367 hybrid contribution 0.448 -0.598 -1.474 1.653 sum -6.311 -3.281 12.063 14.004 Atomic orbital electron populations 1.22038 0.90802 1.03588 1.04032 1.20726 0.97286 0.96295 0.83515 0.89769 1.45852 1.66830 1.14878 1.08345 1.21254 0.76425 0.86868 0.85060 1.90630 1.52154 1.17536 1.85365 1.22047 1.01826 0.97665 0.91767 1.22400 0.98157 0.96850 0.97662 1.22507 1.03161 0.95965 0.93729 1.22352 0.99067 0.95916 0.98467 1.22178 1.01117 0.98743 0.93862 1.20659 0.83281 0.87978 0.84436 1.90496 1.57057 1.16934 1.84237 1.43710 1.58773 1.05341 1.08460 1.19709 1.41441 0.94399 0.91204 0.89121 1.25986 0.93902 0.96470 1.03359 1.69924 1.36215 1.13585 1.33650 0.84992 0.79151 0.77451 0.76767 1.18160 1.20643 1.20706 1.19159 0.87450 0.79293 1.04942 1.29798 0.95020 0.92119 0.89391 1.80896 1.11704 1.11594 1.14463 0.90739 0.89416 0.91253 0.75092 0.87408 0.91772 0.89416 0.90001 0.90033 0.90053 0.92212 0.90498 0.91889 0.91385 0.84737 0.85383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.09 9.26 71.98 0.67 -3.42 16 2 C 0.13 4.64 2.14 44.25 0.09 4.73 16 3 H 0.08 3.22 5.47 -2.39 -0.01 3.21 16 4 N -0.71 -23.06 4.99 -446.10 -2.23 -25.28 16 5 C 0.52 16.31 6.96 87.65 0.61 16.92 16 6 O -0.58 -22.01 14.87 -3.04 -0.05 -22.06 16 7 C -0.11 -2.59 3.29 -10.82 -0.04 -2.63 16 8 C -0.11 -2.02 6.29 31.69 0.20 -1.82 16 9 C -0.12 -1.64 6.91 31.91 0.22 -1.42 16 10 C -0.12 -2.02 6.83 31.67 0.22 -1.80 16 11 C -0.12 -2.67 6.40 31.32 0.20 -2.47 16 12 C 0.45 19.52 6.74 87.66 0.59 20.11 16 13 O -0.60 -29.64 15.73 -3.05 -0.05 -29.69 16 14 N -0.44 -20.13 2.60 -645.42 -1.68 -21.81 16 15 C -0.34 -17.05 9.32 84.04 0.78 -16.27 16 16 H 0.09 4.80 7.40 -2.91 -0.02 4.78 16 17 C 0.01 0.24 4.95 84.93 0.42 0.66 16 18 N -0.90 -44.08 9.34 21.66 0.20 -43.88 16 19 Si 0.99 38.84 29.59 68.60 2.03 40.87 16 20 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 21 H -0.28 -10.82 7.11 99.48 0.71 -10.12 16 22 H -0.28 -11.37 7.11 99.48 0.71 -10.66 16 23 C 0.22 8.55 4.78 84.57 0.40 8.96 16 24 C 0.25 11.59 12.83 89.44 1.15 12.74 16 25 N -0.51 -25.19 18.54 20.01 0.37 -24.82 16 26 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.09 2.17 7.39 -2.39 -0.02 2.15 16 28 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.41 12.87 7.80 -92.71 -0.72 12.15 16 30 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 31 H 0.06 1.26 7.85 -2.39 -0.02 1.24 16 32 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 33 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 34 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 36 H 0.06 1.07 8.14 -2.39 -0.02 1.06 16 37 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.06 1.76 6.39 -2.39 -0.02 1.75 16 39 H 0.28 13.17 8.31 -92.71 -0.77 12.40 16 40 H 0.14 5.30 6.36 -2.39 -0.02 5.29 16 41 H 0.13 3.84 5.87 -2.39 -0.01 3.82 16 Total: -1.00 -66.71 339.83 4.46 -62.25 By element: Atomic # 1 Polarization: 29.81 SS G_CDS: 0.34 Total: 30.15 kcal Atomic # 6 Polarization: 28.76 SS G_CDS: 5.52 Total: 34.28 kcal Atomic # 7 Polarization: -112.46 SS G_CDS: -3.33 Total: -115.80 kcal Atomic # 8 Polarization: -51.66 SS G_CDS: -0.09 Total: -51.75 kcal Atomic # 14 Polarization: 38.84 SS G_CDS: 2.03 Total: 40.87 kcal Total: -66.71 4.46 -62.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265044647.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.223 kcal (2) G-P(sol) polarization free energy of solvation -66.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds