Wall clock time and date at job start Tue Mar 31 2020 03:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42897 * 113.99719 * 2 1 4 4 C 1.53005 * 109.46835 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47000 * 64.99590 * 4 3 2 6 6 C 1.34781 * 119.99565 * 180.02562 * 5 4 3 7 7 O 1.21587 * 120.00133 * 0.02562 * 6 5 4 8 8 C 1.47550 * 119.99924 * 180.02562 * 6 5 4 9 9 C 1.40347 * 120.47381 * 179.97438 * 8 6 5 10 10 C 1.36861 * 118.48664 * 179.74577 * 9 8 6 11 11 C 1.39392 * 119.37933 * 0.51947 * 10 9 8 12 12 N 1.38467 * 119.53709 * 179.74941 * 11 10 9 13 13 C 1.46494 * 119.99974 * 184.72839 * 12 11 10 14 14 C 1.46500 * 120.00006 * 4.72263 * 12 11 10 15 15 C 1.50706 * 109.46949 * 270.00486 * 14 12 11 16 16 H 1.07995 * 120.00167 * 359.72205 * 15 14 12 17 17 C 1.37879 * 119.99394 * 179.97438 * 15 14 12 18 18 N 1.31514 * 119.99350 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 120.00608 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47353 * 89.99430 * 19 17 15 21 21 H 1.48494 * 109.47031 * 209.99977 * 19 17 15 22 22 H 1.48504 * 109.46680 * 329.99678 * 19 17 15 23 23 N 1.32601 * 120.92671 * 359.47066 * 11 10 9 24 24 C 1.31679 * 121.63098 * 0.27143 * 23 11 10 25 25 H 1.09003 * 109.47376 * 59.99944 * 1 2 3 26 26 H 1.08999 * 109.47362 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47390 * 300.00038 * 1 2 3 28 28 H 1.08997 * 109.47606 * 59.99897 * 3 2 1 29 29 H 1.09002 * 109.46795 * 299.99414 * 3 2 1 30 30 H 1.09002 * 109.46925 * 304.99972 * 4 3 2 31 31 H 1.08996 * 109.47299 * 185.00147 * 4 3 2 32 32 H 0.97000 * 120.00469 * 0.02562 * 5 4 3 33 33 H 1.07994 * 120.75722 * 0.02562 * 9 8 6 34 34 H 1.08000 * 120.30572 * 180.25811 * 10 9 8 35 35 H 1.09001 * 109.47412 * 269.99340 * 13 12 11 36 36 H 1.09000 * 109.47567 * 29.99622 * 13 12 11 37 37 H 1.09002 * 109.47279 * 149.99070 * 13 12 11 38 38 H 1.09000 * 109.47175 * 150.00512 * 14 12 11 39 39 H 1.09001 * 109.47297 * 30.00019 * 14 12 11 40 40 H 0.97005 * 119.99656 * 180.02562 * 18 17 15 41 41 H 1.08004 * 119.73564 * 179.97438 * 24 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9756 0.5643 -1.2527 6 6 5.2882 0.3555 -1.4762 7 8 6.1070 0.6815 -0.6385 8 6 5.7317 -0.2687 -2.7374 9 6 7.0960 -0.4903 -2.9807 10 6 7.4616 -1.0769 -4.1620 11 6 6.4777 -1.4244 -5.0862 12 7 6.8443 -2.0134 -6.2846 13 6 5.8308 -2.2880 -7.3060 14 6 8.2458 -2.3617 -6.5310 15 6 8.9466 -1.1958 -7.1797 16 1 8.4014 -0.2880 -7.3916 17 6 10.2826 -1.2901 -7.5072 18 7 10.8940 -0.2729 -8.0737 19 14 11.2238 -2.8631 -7.1477 20 1 11.1284 -3.7751 -8.3158 21 1 12.6494 -2.5386 -6.8881 22 1 10.6416 -3.5262 -5.9533 23 7 5.1952 -1.2040 -4.8316 24 6 4.8005 -0.6469 -3.7056 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.6886 1.8464 0.8899 29 1 1.6886 1.8463 -0.8901 30 1 3.8514 0.5682 0.8410 31 1 3.9785 2.1764 0.0889 32 1 3.3224 0.3039 -1.9208 33 1 7.8401 -0.2085 -2.2505 34 1 8.5030 -1.2649 -4.3778 35 1 5.4200 -3.2857 -7.1514 36 1 5.0314 -1.5506 -7.2323 37 1 6.2866 -2.2319 -8.2946 38 1 8.2943 -3.2277 -7.1911 39 1 8.7332 -2.5980 -5.5851 40 1 11.8339 -0.3393 -8.3045 41 1 3.7477 -0.4811 -3.5302 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269271258.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:11:33 Heat of formation + Delta-G solvation = -32.350080 kcal Electronic energy + Delta-G solvation = -22770.402818 eV Core-core repulsion = 19264.992231 eV Total energy + Delta-G solvation = -3505.410587 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.25320 -39.06797 -38.11970 -36.06342 -34.75078 -32.78848 -31.98918 -30.96560 -29.29716 -28.60798 -26.69838 -25.67456 -23.87911 -22.95278 -22.21547 -21.25942 -20.05893 -17.86397 -17.07494 -17.03716 -16.78760 -16.53124 -16.04587 -15.23762 -15.05272 -14.94632 -14.59496 -14.48727 -14.05024 -13.74963 -13.43757 -13.13497 -12.68784 -12.64209 -12.52183 -12.36206 -12.18005 -12.01897 -11.74512 -11.56377 -11.55148 -11.02602 -10.69559 -10.36274 -10.15134 -9.85029 -9.74000 -9.49184 -9.21052 -9.05041 -8.96814 -8.75506 -6.91972 -6.24043 -4.26369 1.32471 1.85077 3.15997 3.18815 3.24058 3.25253 3.26075 3.39208 3.61908 4.24010 4.41712 4.55470 4.76178 4.78446 4.92111 4.98114 5.01518 5.06327 5.14415 5.29149 5.30194 5.42382 5.49310 5.60646 5.71677 5.89938 5.99761 6.15208 6.29442 6.34076 6.41721 6.54492 6.56999 6.71942 6.75065 6.99052 7.37179 7.48349 7.58897 8.01596 8.28799 8.39466 8.56327 8.82379 9.33915 10.88611 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.027304 B = 0.003056 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.236784 B = 9159.968910 C = 9769.905335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.388 6.388 3 C 0.047 3.953 4 C 0.124 3.876 5 N -0.730 5.730 6 C 0.578 3.422 7 O -0.553 6.553 8 C -0.283 4.283 9 C 0.019 3.981 10 C -0.231 4.231 11 C 0.438 3.562 12 N -0.573 5.573 13 C 0.100 3.900 14 C 0.217 3.783 15 C -0.542 4.542 16 H 0.078 0.922 17 C 0.076 3.924 18 N -0.889 5.889 19 Si 0.872 3.128 20 H -0.273 1.273 21 H -0.282 1.282 22 H -0.264 1.264 23 N -0.561 5.561 24 C 0.189 3.811 25 H 0.042 0.958 26 H 0.087 0.913 27 H 0.041 0.959 28 H 0.066 0.934 29 H 0.058 0.942 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.401 0.599 33 H 0.137 0.863 34 H 0.148 0.852 35 H 0.042 0.958 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.033 0.967 39 H 0.037 0.963 40 H 0.267 0.733 41 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.571 0.020 12.613 22.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.307 6.307 3 C -0.030 4.030 4 C 0.000 4.000 5 N -0.384 5.384 6 C 0.367 3.633 7 O -0.432 6.432 8 C -0.293 4.293 9 C -0.006 4.006 10 C -0.256 4.256 11 C 0.199 3.801 12 N -0.278 5.278 13 C -0.043 4.043 14 C 0.096 3.904 15 C -0.580 4.580 16 H 0.096 0.904 17 C -0.128 4.128 18 N -0.526 5.526 19 Si 0.698 3.302 20 H -0.199 1.199 21 H -0.207 1.207 22 H -0.188 1.188 23 N -0.280 5.280 24 C 0.027 3.973 25 H 0.061 0.939 26 H 0.105 0.895 27 H 0.059 0.941 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.093 0.907 31 H 0.101 0.899 32 H 0.236 0.764 33 H 0.155 0.845 34 H 0.165 0.835 35 H 0.060 0.940 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.051 0.949 39 H 0.055 0.945 40 H 0.077 0.923 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -18.192 -0.218 12.263 21.940 hybrid contribution 0.639 -0.288 0.297 0.762 sum -17.553 -0.506 12.560 21.589 Atomic orbital electron populations 1.22766 0.80813 1.03003 1.00010 1.87957 1.19859 1.27440 1.95430 1.22843 0.93323 0.85422 1.01365 1.21314 0.91526 0.99276 0.87842 1.45781 1.07727 1.64387 1.20481 1.18066 0.81601 0.77339 0.86268 1.90732 1.52900 1.52564 1.46967 1.20243 0.95588 1.15573 0.97890 1.21025 0.94480 0.90066 0.95069 1.21364 1.01380 1.07599 0.95236 1.18592 0.88502 0.86599 0.86359 1.46731 1.09406 1.59405 1.12256 1.21521 0.91584 0.99982 0.91262 1.19878 0.76400 0.96829 0.97258 1.21369 0.95311 1.00664 1.40694 0.90351 1.24880 0.97291 0.96322 0.94287 1.69890 1.11345 1.30546 1.40868 0.86913 0.79952 0.83816 0.79480 1.19889 1.20727 1.18809 1.67227 1.16480 1.21891 1.22422 1.22370 0.98262 0.89470 0.87234 0.93895 0.89475 0.94067 0.91619 0.92396 0.90658 0.89947 0.76397 0.84534 0.83481 0.93988 0.91205 0.91167 0.94865 0.94539 0.92277 0.83650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.39 -3.40 10.65 -35.23 -0.38 -3.77 16 3 C 0.05 0.33 6.07 37.16 0.23 0.56 16 4 C 0.12 1.20 6.06 -4.04 -0.02 1.17 16 5 N -0.73 -8.45 5.46 -61.34 -0.33 -8.79 16 6 C 0.58 8.98 7.77 -12.46 -0.10 8.88 16 7 O -0.55 -10.33 16.41 5.29 0.09 -10.24 16 8 C -0.28 -4.61 5.89 -104.82 -0.62 -5.23 16 9 C 0.02 0.34 9.65 -39.29 -0.38 -0.04 16 10 C -0.23 -4.52 9.12 -39.65 -0.36 -4.88 16 11 C 0.44 8.71 7.36 -155.27 -1.14 7.57 16 12 N -0.57 -11.70 2.96 -183.14 -0.54 -12.24 16 13 C 0.10 1.72 10.41 59.84 0.62 2.34 16 14 C 0.22 4.85 3.85 -5.19 -0.02 4.83 16 15 C -0.54 -14.41 9.88 -34.44 -0.34 -14.75 16 16 H 0.08 2.35 8.06 -52.49 -0.42 1.93 16 17 C 0.08 2.07 5.47 -17.82 -0.10 1.97 16 18 N -0.89 -26.05 13.96 55.43 0.77 -25.28 16 19 Si 0.87 19.92 27.47 -169.99 -4.67 15.25 16 20 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.26 -5.70 6.54 56.52 0.37 -5.33 16 23 N -0.56 -10.06 9.13 -12.14 -0.11 -10.17 16 24 C 0.19 2.86 10.71 -17.13 -0.18 2.68 16 25 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 26 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 28 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.40 3.84 6.52 -40.82 -0.27 3.57 16 33 H 0.14 2.32 7.73 -52.49 -0.41 1.91 16 34 H 0.15 3.02 6.17 -52.49 -0.32 2.69 16 35 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.07 1.16 7.44 -51.93 -0.39 0.77 16 37 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 38 H 0.03 0.72 7.50 -51.93 -0.39 0.33 16 39 H 0.04 0.81 5.40 -51.93 -0.28 0.53 16 40 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 41 H 0.15 1.62 6.41 -52.48 -0.34 1.28 16 LS Contribution 346.77 15.07 5.23 5.23 Total: -1.00 -32.60 346.77 -7.03 -39.63 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -5.78 Total: 4.00 kcal Atomic # 6 Polarization: 7.69 SS G_CDS: -1.30 Total: 6.39 kcal Atomic # 7 Polarization: -56.26 SS G_CDS: -0.21 Total: -56.48 kcal Atomic # 8 Polarization: -13.73 SS G_CDS: -0.29 Total: -14.01 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -4.67 Total: 15.25 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.60 -7.03 -39.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269271258.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.276 kcal (2) G-P(sol) polarization free energy of solvation -32.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds