Wall clock time and date at job start Tue Mar 31 2020 03:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42897 * 113.99719 * 2 1 4 4 C 1.53005 * 109.46835 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47000 * 64.99590 * 4 3 2 6 6 C 1.34781 * 119.99565 * 180.02562 * 5 4 3 7 7 O 1.21587 * 120.00133 * 0.02562 * 6 5 4 8 8 C 1.47550 * 119.99924 * 180.02562 * 6 5 4 9 9 C 1.40347 * 120.47381 * 179.97438 * 8 6 5 10 10 C 1.36861 * 118.48664 * 179.74577 * 9 8 6 11 11 C 1.39392 * 119.37933 * 0.51947 * 10 9 8 12 12 N 1.38467 * 119.53709 * 179.74941 * 11 10 9 13 13 C 1.46494 * 119.99974 * 184.72839 * 12 11 10 14 14 C 1.46500 * 120.00006 * 4.72263 * 12 11 10 15 15 C 1.50706 * 109.46949 * 270.00486 * 14 12 11 16 16 H 1.07995 * 120.00167 * 359.72205 * 15 14 12 17 17 C 1.37879 * 119.99394 * 179.97438 * 15 14 12 18 18 N 1.31514 * 119.99350 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 120.00608 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47353 * 89.99430 * 19 17 15 21 21 H 1.48494 * 109.47031 * 209.99977 * 19 17 15 22 22 H 1.48504 * 109.46680 * 329.99678 * 19 17 15 23 23 N 1.32601 * 120.92671 * 359.47066 * 11 10 9 24 24 C 1.31679 * 121.63098 * 0.27143 * 23 11 10 25 25 H 1.09003 * 109.47376 * 59.99944 * 1 2 3 26 26 H 1.08999 * 109.47362 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47390 * 300.00038 * 1 2 3 28 28 H 1.08997 * 109.47606 * 59.99897 * 3 2 1 29 29 H 1.09002 * 109.46795 * 299.99414 * 3 2 1 30 30 H 1.09002 * 109.46925 * 304.99972 * 4 3 2 31 31 H 1.08996 * 109.47299 * 185.00147 * 4 3 2 32 32 H 0.97000 * 120.00469 * 0.02562 * 5 4 3 33 33 H 1.07994 * 120.75722 * 0.02562 * 9 8 6 34 34 H 1.08000 * 120.30572 * 180.25811 * 10 9 8 35 35 H 1.09001 * 109.47412 * 269.99340 * 13 12 11 36 36 H 1.09000 * 109.47567 * 29.99622 * 13 12 11 37 37 H 1.09002 * 109.47279 * 149.99070 * 13 12 11 38 38 H 1.09000 * 109.47175 * 150.00512 * 14 12 11 39 39 H 1.09001 * 109.47297 * 30.00019 * 14 12 11 40 40 H 0.97005 * 119.99656 * 180.02562 * 18 17 15 41 41 H 1.08004 * 119.73564 * 179.97438 * 24 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9756 0.5643 -1.2527 6 6 5.2882 0.3555 -1.4762 7 8 6.1070 0.6815 -0.6385 8 6 5.7317 -0.2687 -2.7374 9 6 7.0960 -0.4903 -2.9807 10 6 7.4616 -1.0769 -4.1620 11 6 6.4777 -1.4244 -5.0862 12 7 6.8443 -2.0134 -6.2846 13 6 5.8308 -2.2880 -7.3060 14 6 8.2458 -2.3617 -6.5310 15 6 8.9466 -1.1958 -7.1797 16 1 8.4014 -0.2880 -7.3916 17 6 10.2826 -1.2901 -7.5072 18 7 10.8940 -0.2729 -8.0737 19 14 11.2238 -2.8631 -7.1477 20 1 11.1284 -3.7751 -8.3158 21 1 12.6494 -2.5386 -6.8881 22 1 10.6416 -3.5262 -5.9533 23 7 5.1952 -1.2040 -4.8316 24 6 4.8005 -0.6469 -3.7056 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.6886 1.8464 0.8899 29 1 1.6886 1.8463 -0.8901 30 1 3.8514 0.5682 0.8410 31 1 3.9785 2.1764 0.0889 32 1 3.3224 0.3039 -1.9208 33 1 7.8401 -0.2085 -2.2505 34 1 8.5030 -1.2649 -4.3778 35 1 5.4200 -3.2857 -7.1514 36 1 5.0314 -1.5506 -7.2323 37 1 6.2866 -2.2319 -8.2946 38 1 8.2943 -3.2277 -7.1911 39 1 8.7332 -2.5980 -5.5851 40 1 11.8339 -0.3393 -8.3045 41 1 3.7477 -0.4811 -3.5302 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000269271258.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:11:32 Heat of formation + Delta-G solvation = -55.581587 kcal Electronic energy + Delta-G solvation = -22771.410212 eV Core-core repulsion = 19264.992231 eV Total energy + Delta-G solvation = -3506.417981 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.59109 -40.27254 -38.80948 -37.58992 -35.77139 -34.76181 -33.47410 -32.15000 -30.49239 -30.18607 -27.41301 -26.89234 -25.41326 -24.03244 -23.54886 -22.58989 -21.40795 -19.13827 -19.08124 -18.12211 -17.84671 -17.52720 -17.01090 -16.46492 -16.17303 -16.03702 -15.99105 -15.69466 -15.45356 -15.18376 -14.74474 -14.43081 -14.18164 -13.97386 -13.74458 -13.59900 -13.39711 -13.18861 -13.05630 -12.69881 -12.62256 -12.42796 -12.10556 -12.05245 -11.76188 -11.20571 -10.96827 -10.83745 -10.72871 -10.60873 -10.35785 -10.10255 -8.43179 -8.33044 -6.41412 -0.04613 0.43566 1.36894 1.39048 1.48498 1.94687 2.12292 2.21142 2.31022 2.84874 2.99807 3.03161 3.49957 3.88805 3.93007 3.99670 4.05458 4.22181 4.28247 4.46871 4.49617 4.59591 4.63223 4.63430 4.68696 4.69567 4.80256 4.88018 4.90867 4.95519 4.97311 5.02859 5.28924 5.39589 5.43536 5.57303 5.86257 6.23897 6.28211 6.51795 6.55239 6.63297 7.08062 7.24091 7.26012 8.82876 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.027304 B = 0.003056 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.236784 B = 9159.968910 C = 9769.905335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.415 6.415 3 C 0.053 3.947 4 C 0.119 3.881 5 N -0.712 5.712 6 C 0.578 3.422 7 O -0.589 6.589 8 C -0.282 4.282 9 C 0.017 3.983 10 C -0.253 4.253 11 C 0.421 3.579 12 N -0.588 5.588 13 C 0.101 3.899 14 C 0.227 3.773 15 C -0.540 4.540 16 H 0.028 0.972 17 C 0.016 3.984 18 N -0.943 5.943 19 Si 0.944 3.056 20 H -0.260 1.260 21 H -0.284 1.284 22 H -0.241 1.241 23 N -0.562 5.562 24 C 0.199 3.801 25 H 0.054 0.946 26 H 0.090 0.910 27 H 0.052 0.948 28 H 0.086 0.914 29 H 0.075 0.925 30 H 0.062 0.938 31 H 0.087 0.913 32 H 0.413 0.587 33 H 0.138 0.862 34 H 0.129 0.871 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.064 0.936 38 H 0.050 0.950 39 H 0.041 0.959 40 H 0.269 0.731 41 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.909 -1.156 13.772 25.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.335 6.335 3 C -0.023 4.023 4 C -0.004 4.004 5 N -0.364 5.364 6 C 0.367 3.633 7 O -0.471 6.471 8 C -0.292 4.292 9 C -0.009 4.009 10 C -0.278 4.278 11 C 0.184 3.816 12 N -0.294 5.294 13 C -0.042 4.042 14 C 0.104 3.896 15 C -0.579 4.579 16 H 0.046 0.954 17 C -0.183 4.183 18 N -0.582 5.582 19 Si 0.767 3.233 20 H -0.185 1.185 21 H -0.210 1.210 22 H -0.165 1.165 23 N -0.281 5.281 24 C 0.037 3.963 25 H 0.072 0.928 26 H 0.108 0.892 27 H 0.070 0.930 28 H 0.104 0.896 29 H 0.093 0.907 30 H 0.080 0.920 31 H 0.105 0.895 32 H 0.250 0.750 33 H 0.156 0.844 34 H 0.147 0.853 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.068 0.932 39 H 0.059 0.941 40 H 0.078 0.922 41 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -20.622 -1.395 13.431 24.650 hybrid contribution 1.202 0.222 0.030 1.222 sum -19.421 -1.173 13.461 23.659 Atomic orbital electron populations 1.22912 0.79336 1.03653 1.01109 1.87908 1.21530 1.28354 1.95694 1.22844 0.91040 0.85265 1.03196 1.21490 0.93742 0.98939 0.86211 1.45687 1.06443 1.62935 1.21369 1.17957 0.82656 0.77225 0.85500 1.90721 1.54184 1.54261 1.47915 1.20431 0.95110 1.14962 0.98648 1.21129 0.95705 0.89543 0.94494 1.21270 1.00682 1.09460 0.96362 1.18740 0.89366 0.87145 0.86373 1.46707 1.09055 1.60383 1.13258 1.21624 0.90890 1.01408 0.90232 1.19627 0.77528 0.95290 0.97110 1.21522 0.95486 1.00390 1.40473 0.95395 1.25834 0.98371 1.00127 0.93938 1.70056 1.11866 1.33378 1.42936 0.85760 0.77885 0.79201 0.80471 1.18464 1.20995 1.16473 1.67314 1.15276 1.22128 1.23371 1.23040 1.00088 0.87415 0.85711 0.92773 0.89173 0.92976 0.89556 0.90729 0.91989 0.89470 0.74986 0.84407 0.85280 0.91568 0.90874 0.91723 0.93164 0.94077 0.92199 0.79079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 113.37 1.25 1.47 16 2 O -0.42 -6.11 10.65 -148.98 -1.59 -7.70 16 3 C 0.05 0.58 6.07 71.98 0.44 1.02 16 4 C 0.12 2.05 6.06 86.38 0.52 2.57 16 5 N -0.71 -14.72 5.46 -466.25 -2.54 -17.26 16 6 C 0.58 17.12 7.77 86.70 0.67 17.79 16 7 O -0.59 -21.73 16.41 -3.99 -0.07 -21.80 16 8 C -0.28 -8.83 5.89 -19.99 -0.12 -8.95 16 9 C 0.02 0.61 9.65 22.46 0.22 0.83 16 10 C -0.25 -10.06 9.12 22.22 0.20 -9.86 16 11 C 0.42 16.63 7.36 133.25 0.98 17.61 16 12 N -0.59 -23.84 2.96 -733.32 -2.17 -26.00 16 13 C 0.10 3.36 10.41 127.77 1.33 4.69 16 14 C 0.23 10.07 3.85 85.63 0.33 10.40 16 15 C -0.54 -29.62 9.88 25.60 0.25 -29.37 16 16 H 0.03 1.76 8.06 -2.91 -0.02 1.74 16 17 C 0.02 0.89 5.47 84.66 0.46 1.36 16 18 N -0.94 -57.24 13.96 21.45 0.30 -56.94 16 19 Si 0.94 41.04 27.47 68.60 1.88 42.93 16 20 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 21 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 22 H -0.24 -9.56 6.54 99.48 0.65 -8.91 16 23 N -0.56 -19.19 9.13 -192.32 -1.76 -20.95 16 24 C 0.20 5.54 10.71 85.03 0.91 6.46 16 25 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 26 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.05 0.33 8.14 -2.39 -0.02 0.31 16 28 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.41 6.44 6.52 -92.71 -0.60 5.84 16 33 H 0.14 4.80 7.73 -2.91 -0.02 4.78 16 34 H 0.13 5.52 6.17 -2.91 -0.02 5.50 16 35 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.07 2.35 7.44 -2.39 -0.02 2.33 16 37 H 0.06 2.18 8.07 -2.39 -0.02 2.16 16 38 H 0.05 2.07 7.50 -2.39 -0.02 2.06 16 39 H 0.04 1.80 5.40 -2.39 -0.01 1.79 16 40 H 0.27 15.22 8.31 -92.70 -0.77 14.45 16 41 H 0.19 3.43 6.41 -2.91 -0.02 3.42 16 Total: -1.00 -73.16 346.77 1.90 -71.26 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: 0.38 Total: 20.45 kcal Atomic # 6 Polarization: 8.57 SS G_CDS: 7.45 Total: 16.02 kcal Atomic # 7 Polarization: -114.99 SS G_CDS: -6.17 Total: -121.16 kcal Atomic # 8 Polarization: -27.84 SS G_CDS: -1.65 Total: -29.49 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 1.88 Total: 42.93 kcal Total: -73.16 1.90 -71.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269271258.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.676 kcal (2) G-P(sol) polarization free energy of solvation -73.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds