Wall clock time and date at job start Tue Mar 31 2020 03:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34892 * 117.00242 * 2 1 4 4 O 1.21619 * 119.99703 * 0.02562 * 3 2 1 5 5 C 1.46487 * 120.00223 * 180.02562 * 3 2 1 6 6 C 1.37998 * 126.26356 * 180.02562 * 5 3 2 7 7 C 1.39797 * 106.96537 * 179.97438 * 6 5 3 8 8 C 1.35483 * 107.84616 * 0.02562 * 7 6 5 9 9 C 1.50702 * 125.50694 * 180.02562 * 8 7 6 10 10 N 1.46898 * 109.47650 * 95.01894 * 9 8 7 11 11 C 1.46900 * 111.00355 * 190.00114 * 10 9 8 12 12 C 1.53235 * 109.34263 * 187.25389 * 11 10 9 13 13 N 1.47086 * 108.51886 * 306.16546 * 12 11 10 14 14 C 1.36930 * 120.88084 * 231.18344 * 13 12 11 15 15 H 1.08003 * 120.00034 * 27.13616 * 14 13 12 16 16 C 1.38810 * 119.99851 * 206.85031 * 14 13 12 17 17 N 1.31624 * 120.00188 * 17.17041 * 16 14 13 18 18 Si 1.86805 * 119.99970 * 197.16526 * 16 14 13 19 19 H 1.48502 * 109.46715 * 90.00616 * 18 16 14 20 20 H 1.48499 * 109.46981 * 210.00183 * 18 16 14 21 21 H 1.48489 * 109.47231 * 330.00643 * 18 16 14 22 22 C 1.47081 * 118.23455 * 51.46100 * 13 12 11 23 23 C 1.46901 * 110.99711 * 314.29968 * 10 9 8 24 24 N 1.34958 * 108.98546 * 0.25561 * 8 7 6 25 25 H 0.96996 * 125.63296 * 179.73806 * 24 8 7 26 26 H 1.09006 * 109.47264 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47185 * 299.99281 * 1 2 3 28 28 H 1.08993 * 109.47722 * 59.99586 * 1 2 3 29 29 H 1.07990 * 126.51508 * 359.97438 * 6 5 3 30 30 H 1.08004 * 126.07323 * 179.97438 * 7 6 5 31 31 H 1.09004 * 109.46903 * 335.01470 * 9 8 7 32 32 H 1.09001 * 109.47175 * 215.01881 * 9 8 7 33 33 H 1.09002 * 109.49350 * 67.29049 * 11 10 9 34 34 H 1.09006 * 109.50970 * 307.22448 * 11 10 9 35 35 H 1.08998 * 109.62971 * 186.46211 * 12 11 10 36 36 H 1.09001 * 109.62881 * 65.87432 * 12 11 10 37 37 H 0.96996 * 120.00064 * 179.97438 * 17 16 14 38 38 H 1.09000 * 109.63185 * 68.25003 * 22 13 12 39 39 H 1.08998 * 109.62646 * 188.83355 * 22 13 12 40 40 H 1.09000 * 109.49497 * 292.70822 * 23 10 9 41 41 H 1.09005 * 109.49279 * 52.75985 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0644 1.2019 0.0000 4 8 1.4020 2.2218 0.0005 5 6 3.5272 1.2785 -0.0006 6 6 4.2842 2.4324 -0.0001 7 6 5.6259 2.0401 -0.0004 8 6 5.6625 0.6857 -0.0015 9 6 6.9125 -0.1561 -0.0015 10 7 7.2504 -0.5313 1.3779 11 6 8.5823 -1.1473 1.4449 12 6 8.8218 -1.6861 2.8592 13 7 8.5918 -0.5961 3.8196 14 6 9.5241 -0.2933 4.7757 15 1 10.5679 -0.5074 4.5990 16 6 9.1285 0.2941 5.9695 17 7 7.8645 0.2558 6.3347 18 14 10.3900 1.1389 7.0579 19 1 10.4939 2.5701 6.6759 20 1 9.9675 1.0349 8.4777 21 1 11.7110 0.4833 6.8852 22 6 7.3310 0.1560 3.7297 23 6 7.1528 0.6261 2.2772 24 7 4.3987 0.2124 -0.0077 25 1 4.1460 -0.7241 -0.0133 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8901 28 1 -0.3634 0.5138 -0.8898 29 1 3.9109 3.4457 0.0003 30 1 6.4813 2.6995 -0.0005 31 1 7.7344 0.4140 -0.4347 32 1 6.7441 -1.0566 -0.5921 33 1 9.3404 -0.4012 1.2066 34 1 8.6408 -1.9669 0.7286 35 1 9.8488 -2.0407 2.9469 36 1 8.1304 -2.5042 3.0613 37 1 7.5881 0.6659 7.1691 38 1 6.4991 -0.4884 4.0138 39 1 7.3719 1.0199 4.3931 40 1 7.9308 1.3475 2.0274 41 1 6.1742 1.0929 2.1644 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272743229.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:01 Heat of formation + Delta-G solvation = -2.603208 kcal Electronic energy + Delta-G solvation = -23588.892282 eV Core-core repulsion = 20084.771616 eV Total energy + Delta-G solvation = -3504.120666 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.57957 -40.02495 -37.96167 -36.53717 -34.53153 -31.73105 -31.22267 -30.09638 -29.87285 -28.20615 -26.83929 -24.79241 -23.09597 -22.53884 -21.85452 -20.57709 -20.08522 -19.09916 -18.55512 -17.04940 -16.80601 -16.54652 -15.47040 -15.43958 -14.61233 -14.33364 -14.06984 -14.02573 -13.84873 -13.53353 -13.33826 -13.21020 -13.00301 -12.88774 -12.70447 -12.36428 -11.95896 -11.59204 -11.43524 -11.07051 -11.01640 -10.81774 -10.75300 -10.48171 -10.31586 -10.07298 -9.76921 -9.62198 -9.03240 -8.50868 -8.28323 -7.84693 -6.67034 -5.77463 -3.19305 1.14885 2.48428 2.56129 3.08825 3.10759 3.38626 3.45395 3.46632 4.40220 4.51277 4.75919 4.77107 4.88020 4.96583 5.15309 5.26816 5.29680 5.39452 5.43281 5.51258 5.56787 5.86593 5.91104 5.95031 6.04881 6.10974 6.21213 6.25888 6.34215 6.53937 6.66577 6.72041 6.85494 6.89723 7.22443 7.32991 7.49131 7.62006 7.63234 7.69488 7.81685 8.44050 9.21573 9.84948 10.43304 11.31150 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.020193 B = 0.003593 C = 0.003372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.281095 B = 7792.113221 C = 8301.165323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.365 6.365 3 C 0.539 3.461 4 O -0.505 6.505 5 C -0.056 4.056 6 C -0.087 4.087 7 C -0.209 4.209 8 C 0.090 3.910 9 C 0.108 3.892 10 N -0.530 5.530 11 C 0.044 3.956 12 C 0.149 3.851 13 N -0.596 5.596 14 C -0.253 4.253 15 H 0.066 0.934 16 C 0.002 3.998 17 N -0.903 5.903 18 Si 0.902 3.098 19 H -0.287 1.287 20 H -0.291 1.291 21 H -0.279 1.279 22 C 0.179 3.821 23 C 0.032 3.968 24 N -0.511 5.511 25 H 0.424 0.576 26 H 0.101 0.899 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.150 0.850 30 H 0.146 0.854 31 H 0.057 0.943 32 H 0.079 0.921 33 H 0.031 0.969 34 H 0.062 0.938 35 H 0.056 0.944 36 H 0.024 0.976 37 H 0.254 0.746 38 H 0.024 0.976 39 H 0.088 0.912 40 H 0.027 0.973 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.940 -1.011 -15.851 18.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.282 6.282 3 C 0.386 3.614 4 O -0.393 6.393 5 C -0.167 4.167 6 C -0.114 4.114 7 C -0.233 4.233 8 C -0.031 4.031 9 C -0.020 4.020 10 N -0.256 5.256 11 C -0.085 4.085 12 C 0.022 3.978 13 N -0.319 5.319 14 C -0.383 4.383 15 H 0.084 0.916 16 C -0.197 4.197 17 N -0.547 5.547 18 Si 0.732 3.268 19 H -0.215 1.215 20 H -0.218 1.218 21 H -0.205 1.205 22 C 0.053 3.947 23 C -0.097 4.097 24 N -0.106 5.106 25 H 0.262 0.738 26 H 0.120 0.880 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.168 0.832 30 H 0.163 0.837 31 H 0.076 0.924 32 H 0.098 0.902 33 H 0.049 0.951 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.042 0.958 37 H 0.064 0.936 38 H 0.042 0.958 39 H 0.106 0.894 40 H 0.045 0.955 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.674 -1.172 -15.519 18.325 hybrid contribution 0.784 0.669 0.389 1.102 sum -8.890 -0.503 -15.130 17.555 Atomic orbital electron populations 1.23257 0.75739 1.03729 1.02693 1.86570 1.23899 1.32888 1.84849 1.19826 0.87050 0.81626 0.72935 1.90889 1.65501 1.35830 1.47108 1.19166 0.86245 0.88467 1.22804 1.21304 0.92167 0.96804 1.01087 1.20730 0.97031 0.93297 1.12239 1.20407 0.85362 0.94219 1.03127 1.20796 0.91261 0.97096 0.92848 1.62206 1.29027 1.30105 1.04258 1.22656 0.87962 0.97726 1.00171 1.20961 0.98450 0.90991 0.87375 1.44162 1.19019 1.34041 1.34664 1.19195 0.88287 1.36769 0.94043 0.91631 1.25031 0.96192 1.02056 0.96378 1.70029 1.15105 1.46664 1.22909 0.86288 0.80881 0.79846 0.79743 1.21454 1.21753 1.20482 1.20952 0.87297 0.96745 0.89680 1.23094 0.99685 0.90571 0.96342 1.41750 1.05174 1.08876 1.54785 0.73809 0.88017 0.91659 0.91854 0.83228 0.83652 0.92449 0.90225 0.95056 0.91946 0.92511 0.95765 0.93599 0.95804 0.89370 0.95452 0.91299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.57 101.05 1.07 1.40 16 2 O -0.36 -4.26 10.58 -41.02 -0.43 -4.70 16 3 C 0.54 7.42 7.93 34.05 0.27 7.69 16 4 O -0.50 -7.95 16.68 -19.36 -0.32 -8.27 16 5 C -0.06 -0.76 7.10 -81.99 -0.58 -1.34 16 6 C -0.09 -1.16 10.66 -39.09 -0.42 -1.58 16 7 C -0.21 -2.73 9.42 -39.98 -0.38 -3.10 16 8 C 0.09 1.16 5.05 -82.20 -0.41 0.75 16 9 C 0.11 1.38 5.80 -4.98 -0.03 1.35 16 10 N -0.53 -8.81 4.77 -235.46 -1.12 -9.93 16 11 C 0.04 0.74 5.58 -3.70 -0.02 0.72 16 12 C 0.15 3.09 6.69 -3.60 -0.02 3.06 16 13 N -0.60 -14.98 3.03 -171.73 -0.52 -15.50 16 14 C -0.25 -6.95 9.63 -15.06 -0.15 -7.10 16 15 H 0.07 1.76 7.88 -52.48 -0.41 1.35 16 16 C 0.00 0.06 4.93 -17.43 -0.09 -0.03 16 17 N -0.90 -26.37 11.16 55.49 0.62 -25.75 16 18 Si 0.90 21.72 29.59 -169.99 -5.03 16.69 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 22 C 0.18 4.35 5.45 -3.36 -0.02 4.33 16 23 C 0.03 0.61 5.04 -3.46 -0.02 0.60 16 24 N -0.51 -6.29 6.07 -5.82 -0.04 -6.32 16 25 H 0.42 4.44 8.96 -40.82 -0.37 4.07 16 26 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.15 1.82 8.06 -52.49 -0.42 1.39 16 30 H 0.15 1.73 8.06 -52.48 -0.42 1.31 16 31 H 0.06 0.69 8.08 -51.93 -0.42 0.28 16 32 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.87 8.11 -51.93 -0.42 0.44 16 35 H 0.06 1.13 7.95 -51.93 -0.41 0.71 16 36 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 38 H 0.02 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.09 2.39 6.12 -51.93 -0.32 2.07 16 40 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.07 1.29 5.75 -51.93 -0.30 0.99 16 LS Contribution 339.46 15.07 5.12 5.12 Total: -1.00 -31.98 339.46 -8.54 -40.52 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -6.01 Total: 1.42 kcal Atomic # 6 Polarization: 7.53 SS G_CDS: -0.79 Total: 6.74 kcal Atomic # 7 Polarization: -56.45 SS G_CDS: -1.06 Total: -57.51 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: -0.76 Total: -12.97 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.03 Total: 16.69 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.98 -8.54 -40.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272743229.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.913 kcal (2) G-P(sol) polarization free energy of solvation -31.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds