Wall clock time and date at job start Tue Mar 31 2020 03:16:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34892 * 117.00242 * 2 1 4 4 O 1.21619 * 119.99703 * 0.02562 * 3 2 1 5 5 C 1.46487 * 120.00223 * 180.02562 * 3 2 1 6 6 C 1.37998 * 126.26356 * 180.02562 * 5 3 2 7 7 C 1.39797 * 106.96537 * 179.97438 * 6 5 3 8 8 C 1.35483 * 107.84616 * 0.02562 * 7 6 5 9 9 C 1.50702 * 125.50694 * 180.02562 * 8 7 6 10 10 N 1.46898 * 109.47650 * 95.01894 * 9 8 7 11 11 C 1.46900 * 111.00355 * 190.00114 * 10 9 8 12 12 C 1.53235 * 109.34263 * 187.25389 * 11 10 9 13 13 N 1.47086 * 108.51886 * 306.16546 * 12 11 10 14 14 C 1.36930 * 120.88084 * 231.18344 * 13 12 11 15 15 H 1.08003 * 120.00034 * 27.13616 * 14 13 12 16 16 C 1.38810 * 119.99851 * 206.85031 * 14 13 12 17 17 N 1.31624 * 120.00188 * 17.17041 * 16 14 13 18 18 Si 1.86805 * 119.99970 * 197.16526 * 16 14 13 19 19 H 1.48502 * 109.46715 * 90.00616 * 18 16 14 20 20 H 1.48499 * 109.46981 * 210.00183 * 18 16 14 21 21 H 1.48489 * 109.47231 * 330.00643 * 18 16 14 22 22 C 1.47081 * 118.23455 * 51.46100 * 13 12 11 23 23 C 1.46901 * 110.99711 * 314.29968 * 10 9 8 24 24 N 1.34958 * 108.98546 * 0.25561 * 8 7 6 25 25 H 0.96996 * 125.63296 * 179.73806 * 24 8 7 26 26 H 1.09006 * 109.47264 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47185 * 299.99281 * 1 2 3 28 28 H 1.08993 * 109.47722 * 59.99586 * 1 2 3 29 29 H 1.07990 * 126.51508 * 359.97438 * 6 5 3 30 30 H 1.08004 * 126.07323 * 179.97438 * 7 6 5 31 31 H 1.09004 * 109.46903 * 335.01470 * 9 8 7 32 32 H 1.09001 * 109.47175 * 215.01881 * 9 8 7 33 33 H 1.09002 * 109.49350 * 67.29049 * 11 10 9 34 34 H 1.09006 * 109.50970 * 307.22448 * 11 10 9 35 35 H 1.08998 * 109.62971 * 186.46211 * 12 11 10 36 36 H 1.09001 * 109.62881 * 65.87432 * 12 11 10 37 37 H 0.96996 * 120.00064 * 179.97438 * 17 16 14 38 38 H 1.09000 * 109.63185 * 68.25003 * 22 13 12 39 39 H 1.08998 * 109.62646 * 188.83355 * 22 13 12 40 40 H 1.09000 * 109.49497 * 292.70822 * 23 10 9 41 41 H 1.09005 * 109.49279 * 52.75985 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0644 1.2019 0.0000 4 8 1.4020 2.2218 0.0005 5 6 3.5272 1.2785 -0.0006 6 6 4.2842 2.4324 -0.0001 7 6 5.6259 2.0401 -0.0004 8 6 5.6625 0.6857 -0.0015 9 6 6.9125 -0.1561 -0.0015 10 7 7.2504 -0.5313 1.3779 11 6 8.5823 -1.1473 1.4449 12 6 8.8218 -1.6861 2.8592 13 7 8.5918 -0.5961 3.8196 14 6 9.5241 -0.2933 4.7757 15 1 10.5679 -0.5074 4.5990 16 6 9.1285 0.2941 5.9695 17 7 7.8645 0.2558 6.3347 18 14 10.3900 1.1389 7.0579 19 1 10.4939 2.5701 6.6759 20 1 9.9675 1.0349 8.4777 21 1 11.7110 0.4833 6.8852 22 6 7.3310 0.1560 3.7297 23 6 7.1528 0.6261 2.2772 24 7 4.3987 0.2124 -0.0077 25 1 4.1460 -0.7241 -0.0133 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8901 28 1 -0.3634 0.5138 -0.8898 29 1 3.9109 3.4457 0.0003 30 1 6.4813 2.6995 -0.0005 31 1 7.7344 0.4140 -0.4347 32 1 6.7441 -1.0566 -0.5921 33 1 9.3404 -0.4012 1.2066 34 1 8.6408 -1.9669 0.7286 35 1 9.8488 -2.0407 2.9469 36 1 8.1304 -2.5042 3.0613 37 1 7.5881 0.6659 7.1691 38 1 6.4991 -0.4884 4.0138 39 1 7.3719 1.0199 4.3931 40 1 7.9308 1.3475 2.0274 41 1 6.1742 1.0929 2.1644 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272743229.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:00 Heat of formation + Delta-G solvation = -24.268358 kcal Electronic energy + Delta-G solvation = -23589.831753 eV Core-core repulsion = 20084.771616 eV Total energy + Delta-G solvation = -3505.060138 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.58808 -41.03036 -39.46285 -37.54335 -36.24099 -33.49239 -32.23632 -31.57919 -31.35130 -29.27239 -28.10783 -26.30029 -24.51923 -24.17733 -23.12227 -21.58145 -21.10995 -20.75034 -19.58641 -18.69472 -18.01726 -17.51413 -17.08027 -16.56666 -16.30734 -15.57333 -15.43474 -15.22898 -15.18678 -14.89933 -14.71882 -14.69192 -14.31886 -14.04248 -13.72061 -13.41043 -13.12097 -13.00893 -12.95170 -12.77192 -12.60551 -12.26786 -12.02952 -11.88717 -11.88172 -11.85932 -11.57641 -11.40688 -10.58137 -10.03750 -9.41606 -9.11283 -8.66879 -7.86618 -5.31627 0.11063 1.47152 1.48670 1.51459 1.57461 1.59689 2.06983 2.14675 2.51663 3.12103 3.29469 3.70711 3.73308 3.85986 4.18836 4.27019 4.28014 4.30827 4.33123 4.40794 4.49468 4.58777 4.67339 4.69440 4.71858 4.79340 4.95418 4.95821 5.07489 5.11099 5.22443 5.24430 5.40214 5.62091 5.68322 5.69195 5.84352 6.15846 6.21964 6.38248 6.42283 6.61606 7.14114 7.85671 8.39304 9.19871 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.020193 B = 0.003593 C = 0.003372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.281095 B = 7792.113221 C = 8301.165323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.366 6.366 3 C 0.540 3.460 4 O -0.533 6.533 5 C -0.069 4.069 6 C -0.099 4.099 7 C -0.215 4.215 8 C 0.086 3.914 9 C 0.114 3.886 10 N -0.539 5.539 11 C 0.056 3.944 12 C 0.142 3.858 13 N -0.615 5.615 14 C -0.262 4.262 15 H 0.070 0.930 16 C -0.053 4.053 17 N -0.937 5.937 18 Si 0.967 3.033 19 H -0.286 1.286 20 H -0.297 1.297 21 H -0.267 1.267 22 C 0.187 3.813 23 C 0.056 3.944 24 N -0.503 5.503 25 H 0.432 0.568 26 H 0.134 0.866 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.155 0.845 30 H 0.156 0.844 31 H 0.074 0.926 32 H 0.110 0.890 33 H 0.031 0.969 34 H 0.104 0.896 35 H 0.062 0.938 36 H 0.014 0.986 37 H 0.249 0.751 38 H -0.009 1.009 39 H 0.052 0.948 40 H 0.024 0.976 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.180 -1.718 -17.778 19.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.283 6.283 3 C 0.388 3.612 4 O -0.423 6.423 5 C -0.180 4.180 6 C -0.125 4.125 7 C -0.239 4.239 8 C -0.036 4.036 9 C -0.014 4.014 10 N -0.264 5.264 11 C -0.073 4.073 12 C 0.017 3.983 13 N -0.339 5.339 14 C -0.392 4.392 15 H 0.088 0.912 16 C -0.248 4.248 17 N -0.584 5.584 18 Si 0.796 3.204 19 H -0.213 1.213 20 H -0.223 1.223 21 H -0.191 1.191 22 C 0.061 3.939 23 C -0.074 4.074 24 N -0.098 5.098 25 H 0.272 0.728 26 H 0.152 0.848 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.172 0.828 30 H 0.173 0.827 31 H 0.092 0.908 32 H 0.128 0.872 33 H 0.050 0.950 34 H 0.122 0.878 35 H 0.081 0.919 36 H 0.032 0.968 37 H 0.058 0.942 38 H 0.009 0.991 39 H 0.070 0.930 40 H 0.042 0.958 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.906 -1.924 -17.489 19.721 hybrid contribution 0.488 0.796 0.949 1.331 sum -8.418 -1.128 -16.541 18.594 Atomic orbital electron populations 1.23592 0.73870 1.05942 1.02786 1.86561 1.25746 1.31678 1.84282 1.19908 0.87200 0.81821 0.72316 1.90868 1.66094 1.36770 1.48586 1.19265 0.86473 0.88982 1.23242 1.21516 0.92584 0.97258 1.01160 1.20937 0.97183 0.93744 1.12008 1.20516 0.85647 0.94283 1.03154 1.20881 0.91333 0.98759 0.90400 1.62090 1.29123 1.28939 1.06297 1.22502 0.87909 0.98898 0.98009 1.21162 0.98566 0.89769 0.88848 1.44449 1.18683 1.35627 1.35111 1.19561 0.89043 1.36130 0.94488 0.91225 1.25804 0.97902 1.03133 0.97947 1.70198 1.17028 1.47934 1.23208 0.85262 0.79070 0.78667 0.77438 1.21255 1.22331 1.19108 1.20675 0.86163 0.94642 0.92433 1.22631 0.99756 0.91242 0.93724 1.41735 1.04851 1.09140 1.54117 0.72812 0.84760 0.92048 0.91363 0.82752 0.82669 0.90831 0.87178 0.95046 0.87824 0.91922 0.96750 0.94209 0.99070 0.93009 0.95785 0.90799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.57 113.37 1.20 1.67 16 2 O -0.37 -8.13 10.58 -58.06 -0.61 -8.75 16 3 C 0.54 14.58 7.93 69.97 0.55 15.14 16 4 O -0.53 -16.78 16.68 19.45 0.32 -16.45 16 5 C -0.07 -1.79 7.10 40.32 0.29 -1.51 16 6 C -0.10 -2.55 10.66 22.59 0.24 -2.31 16 7 C -0.21 -5.23 9.42 22.01 0.21 -5.02 16 8 C 0.09 2.00 5.05 41.44 0.21 2.21 16 9 C 0.11 2.45 5.80 85.56 0.50 2.95 16 10 N -0.54 -16.48 4.77 -898.85 -4.29 -20.77 16 11 C 0.06 1.69 5.58 86.38 0.48 2.17 16 12 C 0.14 5.71 6.69 86.35 0.58 6.29 16 13 N -0.61 -31.10 3.03 -697.23 -2.11 -33.21 16 14 C -0.26 -14.47 9.63 84.03 0.81 -13.66 16 15 H 0.07 3.71 7.88 -2.91 -0.02 3.68 16 16 C -0.05 -2.98 4.93 84.86 0.42 -2.56 16 17 N -0.94 -56.56 11.16 21.65 0.24 -56.32 16 18 Si 0.97 45.17 29.59 68.60 2.03 47.20 16 19 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 20 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 21 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 22 C 0.19 9.29 5.45 86.50 0.47 9.77 16 23 C 0.06 2.10 5.04 86.54 0.44 2.54 16 24 N -0.50 -11.42 6.07 -172.33 -1.05 -12.47 16 25 H 0.43 8.09 8.96 -92.71 -0.83 7.26 16 26 H 0.13 1.14 8.14 -2.38 -0.02 1.12 16 27 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.15 3.71 8.06 -2.92 -0.02 3.69 16 30 H 0.16 3.40 8.06 -2.91 -0.02 3.37 16 31 H 0.07 1.44 8.08 -2.38 -0.02 1.42 16 32 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.03 0.97 8.14 -2.39 -0.02 0.96 16 34 H 0.10 2.36 8.11 -2.38 -0.02 2.34 16 35 H 0.06 2.40 7.95 -2.39 -0.02 2.38 16 36 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 38 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 39 H 0.05 2.92 6.12 -2.39 -0.01 2.91 16 40 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.07 2.71 5.75 -2.38 -0.01 2.69 16 Total: -1.00 -70.67 339.46 1.13 -69.54 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: 0.21 Total: 13.56 kcal Atomic # 6 Polarization: 11.28 SS G_CDS: 6.39 Total: 17.67 kcal Atomic # 7 Polarization: -115.56 SS G_CDS: -7.21 Total: -122.77 kcal Atomic # 8 Polarization: -24.91 SS G_CDS: -0.29 Total: -25.20 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -70.67 1.13 -69.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272743229.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.270 kcal (2) G-P(sol) polarization free energy of solvation -70.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds