Wall clock time and date at job start Tue Mar 31 2020 03:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.33470 * 125.50367 * 2 1 4 4 C 1.30331 * 109.72700 * 180.02562 * 3 2 1 5 5 N 1.34671 * 108.04427 * 359.93769 * 4 3 2 6 6 N 1.30980 * 125.49273 * 180.02562 * 2 1 3 7 7 C 1.46299 * 125.04346 * 180.12720 * 5 4 3 8 8 C 1.53306 * 108.77559 * 17.00830 * 7 5 4 9 9 H 1.09010 * 109.46531 * 69.86928 * 8 7 5 10 10 N 1.46496 * 109.47205 * 189.86024 * 8 7 5 11 11 C 1.34777 * 120.00258 * 275.00676 * 10 8 7 12 12 O 1.21579 * 119.99978 * 359.97438 * 11 10 8 13 13 N 1.34784 * 119.99908 * 179.97438 * 11 10 8 14 14 C 1.46494 * 119.99635 * 179.97438 * 13 11 10 15 15 C 1.53002 * 109.47001 * 180.02562 * 14 13 11 16 16 C 1.50701 * 109.47324 * 180.02562 * 15 14 13 17 17 H 1.07999 * 119.99992 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00038 * 179.97438 * 16 15 14 19 19 N 1.31514 * 120.00041 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00004 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47317 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47320 * 120.00236 * 20 18 16 23 23 H 1.48507 * 109.47345 * 239.99791 * 20 18 16 24 24 C 1.53157 * 109.48853 * 309.87030 * 8 7 5 25 25 C 1.50929 * 127.90104 * 179.89688 * 4 3 2 26 26 H 1.09005 * 109.47356 * 269.97710 * 1 2 3 27 27 H 1.09001 * 109.46593 * 29.97372 * 1 2 3 28 28 H 1.08994 * 109.47456 * 149.97334 * 1 2 3 29 29 H 1.09002 * 109.58630 * 257.22653 * 7 5 4 30 30 H 1.09001 * 109.70718 * 136.86652 * 7 5 4 31 31 H 0.96999 * 119.99694 * 95.00066 * 10 8 7 32 32 H 0.96995 * 120.00015 * 359.72369 * 13 11 10 33 33 H 1.09005 * 109.47306 * 299.99972 * 14 13 11 34 34 H 1.09002 * 109.47518 * 60.00210 * 14 13 11 35 35 H 1.09005 * 109.46767 * 299.99934 * 15 14 13 36 36 H 1.08996 * 109.47766 * 59.99412 * 15 14 13 37 37 H 0.97001 * 120.00302 * 179.97438 * 19 18 16 38 38 H 1.08993 * 109.51129 * 189.11216 * 24 8 7 39 39 H 1.09000 * 109.50369 * 309.24503 * 24 8 7 40 40 H 1.09005 * 109.71485 * 315.65244 * 25 4 3 41 41 H 1.08999 * 109.71751 * 76.24949 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2821 1.0866 0.0000 4 6 3.5363 0.7322 -0.0005 5 7 3.5896 -0.6135 0.0005 6 7 2.2674 -1.0664 -0.0005 7 6 4.8197 -1.4054 0.0029 8 6 5.9853 -0.5053 0.4287 9 1 5.8845 -0.2558 1.4851 10 7 7.2511 -1.2102 0.2121 11 6 7.7246 -2.0498 1.1541 12 8 7.1015 -2.2218 2.1838 13 7 8.8890 -2.6987 0.9545 14 6 9.4039 -3.6109 1.9786 15 6 10.7297 -4.2114 1.5067 16 6 11.2592 -5.1503 2.5599 17 1 10.7057 -5.3031 3.4746 18 6 12.4502 -5.8142 2.3557 19 7 13.1239 -5.6285 1.2416 20 14 13.1068 -6.9774 3.6615 21 1 12.1688 -7.0101 4.8123 22 1 13.2367 -8.3415 3.0892 23 1 14.4375 -6.5049 4.1214 24 6 5.9682 0.7806 -0.4032 25 6 4.7523 1.6262 -0.0029 26 1 -0.3634 -0.0004 1.0277 27 1 -0.3632 0.8903 -0.5134 28 1 -0.3634 -0.8897 -0.5142 29 1 5.0055 -1.7949 -0.9980 30 1 4.7222 -2.2336 0.7050 31 1 7.7484 -1.0727 -0.6093 32 1 9.3841 -2.5645 0.1313 33 1 9.5640 -3.0621 2.9067 34 1 8.6828 -4.4104 2.1490 35 1 10.5700 -4.7601 0.5784 36 1 11.4507 -3.4119 1.3365 37 1 13.9620 -6.0953 1.0981 38 1 6.8815 1.3459 -0.2184 39 1 5.9033 0.5283 -1.4617 40 1 4.6133 2.4342 -0.7213 41 1 4.9050 2.0420 0.9930 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273561100.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:33:24 Heat of formation + Delta-G solvation = 42.004338 kcal Electronic energy + Delta-G solvation = -22653.209697 eV Core-core repulsion = 19183.316110 eV Total energy + Delta-G solvation = -3469.893587 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.56257 -40.00041 -37.60307 -34.94235 -34.01429 -33.50621 -32.88082 -31.50336 -29.86945 -29.33434 -27.68892 -24.88612 -24.43286 -22.84338 -21.24288 -20.89542 -20.61375 -19.98027 -18.11297 -17.20285 -16.63286 -16.37732 -15.93220 -15.49241 -15.03719 -14.68351 -14.54195 -14.43935 -14.30752 -13.73205 -13.52222 -13.48211 -13.14602 -12.87133 -12.75838 -12.32835 -12.24202 -12.08428 -11.55057 -11.41150 -11.24022 -11.08896 -10.65821 -10.40588 -10.23371 -10.11858 -9.89673 -9.63821 -9.50969 -9.36997 -9.30208 -8.57667 -8.38299 -6.13661 -4.16370 1.40464 1.95049 2.64710 2.80232 3.25792 3.33726 3.33999 3.38938 3.59439 3.99146 4.11944 4.24197 4.38466 4.46915 4.58639 4.60799 4.81874 4.91226 5.14113 5.21724 5.23786 5.26210 5.30418 5.42591 5.50877 5.57539 5.60560 6.13888 6.18150 6.21249 6.27339 6.31289 6.58386 6.69361 6.85284 7.02203 7.49758 7.56631 7.85199 7.92416 8.16116 8.28052 8.77451 8.90228 9.48796 10.97968 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.038800 B = 0.002368 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.472523 B =11819.409491 C =12241.240793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.213 3.787 3 N -0.539 5.539 4 C 0.274 3.726 5 N -0.368 5.368 6 N -0.312 5.312 7 C 0.114 3.886 8 C 0.156 3.844 9 H 0.103 0.897 10 N -0.744 5.744 11 C 0.698 3.302 12 O -0.593 6.593 13 N -0.734 5.734 14 C 0.139 3.861 15 C 0.013 3.987 16 C -0.521 4.521 17 H 0.060 0.940 18 C 0.058 3.942 19 N -0.894 5.894 20 Si 0.897 3.103 21 H -0.271 1.271 22 H -0.283 1.283 23 H -0.283 1.283 24 C -0.136 4.136 25 C -0.035 4.035 26 H 0.082 0.918 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.104 0.896 31 H 0.400 0.600 32 H 0.395 0.605 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.022 0.978 36 H 0.023 0.977 37 H 0.262 0.738 38 H 0.099 0.901 39 H 0.080 0.920 40 H 0.109 0.891 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.363 15.585 -7.660 24.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.069 4.069 3 N -0.268 5.268 4 C -0.003 4.003 5 N -0.159 5.159 6 N -0.141 5.141 7 C -0.010 4.010 8 C 0.048 3.952 9 H 0.121 0.879 10 N -0.401 5.401 11 C 0.398 3.602 12 O -0.471 6.471 13 N -0.387 5.387 14 C 0.016 3.984 15 C -0.025 4.025 16 C -0.560 4.560 17 H 0.079 0.921 18 C -0.143 4.143 19 N -0.533 5.533 20 Si 0.725 3.275 21 H -0.196 1.196 22 H -0.209 1.209 23 H -0.209 1.209 24 C -0.175 4.175 25 C -0.075 4.075 26 H 0.101 0.899 27 H 0.103 0.897 28 H 0.099 0.901 29 H 0.108 0.892 30 H 0.123 0.877 31 H 0.235 0.765 32 H 0.228 0.772 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.041 0.959 36 H 0.041 0.959 37 H 0.071 0.929 38 H 0.117 0.883 39 H 0.098 0.902 40 H 0.128 0.872 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -18.067 14.836 -6.751 24.333 hybrid contribution 1.212 -0.723 -0.185 1.423 sum -16.855 14.113 -6.936 23.052 Atomic orbital electron populations 1.20065 0.83886 1.03886 1.03689 1.24427 0.98261 0.85531 0.98687 1.70154 0.99803 1.30891 1.25946 1.24288 0.95075 0.84041 0.96889 1.50094 1.05680 1.05776 1.54328 1.77978 0.86590 1.22563 1.27001 1.22419 0.79034 0.95293 1.04234 1.20876 0.82137 0.90109 1.02105 0.87899 1.45001 1.23747 1.49165 1.22175 1.16091 0.81833 0.79024 0.83269 1.90923 1.60171 1.68420 1.27568 1.45553 1.22170 1.47585 1.23392 1.21646 0.97240 0.90354 0.89131 1.19334 0.89686 0.95993 0.97476 1.21078 1.06192 1.25267 1.03414 0.92149 1.24999 0.96724 0.96903 0.95716 1.69960 1.15572 1.42870 1.24900 0.86451 0.78844 0.80537 0.81703 1.19560 1.20926 1.20928 1.22052 0.99321 0.95390 1.00707 1.20311 0.86267 0.95731 1.05233 0.89910 0.89651 0.90084 0.89192 0.87746 0.76536 0.77199 0.92608 0.92649 0.95948 0.95917 0.92882 0.88267 0.90156 0.87226 0.87743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.45 10.51 36.00 0.38 -0.08 16 2 C 0.21 2.67 8.15 -156.43 -1.27 1.39 16 3 N -0.54 -6.87 11.18 -8.03 -0.09 -6.96 16 4 C 0.27 3.04 7.72 -155.78 -1.20 1.84 16 5 N -0.37 -4.56 4.04 -58.29 -0.24 -4.80 16 6 N -0.31 -4.41 12.74 32.50 0.41 -4.00 16 7 C 0.11 1.24 6.87 -3.99 -0.03 1.21 16 8 C 0.16 1.45 2.47 -67.69 -0.17 1.28 16 9 H 0.10 1.18 7.55 -51.92 -0.39 0.79 16 10 N -0.74 -7.48 5.08 -58.44 -0.30 -7.77 16 11 C 0.70 10.79 8.53 -86.91 -0.74 10.05 16 12 O -0.59 -11.71 16.00 5.30 0.08 -11.63 16 13 N -0.73 -11.77 5.56 -65.23 -0.36 -12.13 16 14 C 0.14 2.84 5.61 -4.04 -0.02 2.82 16 15 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 16 C -0.52 -14.17 9.11 -34.44 -0.31 -14.48 16 17 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 18 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 19 N -0.89 -25.67 13.29 55.43 0.74 -24.93 16 20 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 21 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 C -0.14 -0.77 5.43 -26.43 -0.14 -0.92 16 25 C -0.04 -0.23 6.33 -27.56 -0.17 -0.40 16 26 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 31 H 0.40 2.77 8.62 -40.82 -0.35 2.42 16 32 H 0.39 5.28 8.49 -40.82 -0.35 4.93 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 38 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.08 0.39 8.12 -51.93 -0.42 -0.04 16 40 H 0.11 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 346.57 15.07 5.22 5.22 Total: -1.00 -35.21 346.57 -9.60 -44.81 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -6.13 Total: 1.69 kcal Atomic # 6 Polarization: 8.32 SS G_CDS: -3.93 Total: 4.39 kcal Atomic # 7 Polarization: -60.75 SS G_CDS: 0.17 Total: -60.59 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: 0.08 Total: -11.63 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -35.21 -9.60 -44.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273561100.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.818 kcal (2) G-P(sol) polarization free energy of solvation -35.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds