Wall clock time and date at job start Tue Mar 31 2020 03:33:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.33470 * 125.50367 * 2 1 4 4 C 1.30331 * 109.72700 * 180.02562 * 3 2 1 5 5 N 1.34671 * 108.04427 * 359.93769 * 4 3 2 6 6 N 1.30980 * 125.49273 * 180.02562 * 2 1 3 7 7 C 1.46299 * 125.04346 * 180.12720 * 5 4 3 8 8 C 1.53306 * 108.77559 * 17.00830 * 7 5 4 9 9 H 1.09010 * 109.46531 * 69.86928 * 8 7 5 10 10 N 1.46496 * 109.47205 * 189.86024 * 8 7 5 11 11 C 1.34777 * 120.00258 * 275.00676 * 10 8 7 12 12 O 1.21579 * 119.99978 * 359.97438 * 11 10 8 13 13 N 1.34784 * 119.99908 * 179.97438 * 11 10 8 14 14 C 1.46494 * 119.99635 * 179.97438 * 13 11 10 15 15 C 1.53002 * 109.47001 * 180.02562 * 14 13 11 16 16 C 1.50701 * 109.47324 * 180.02562 * 15 14 13 17 17 H 1.07999 * 119.99992 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00038 * 179.97438 * 16 15 14 19 19 N 1.31514 * 120.00041 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00004 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47317 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47320 * 120.00236 * 20 18 16 23 23 H 1.48507 * 109.47345 * 239.99791 * 20 18 16 24 24 C 1.53157 * 109.48853 * 309.87030 * 8 7 5 25 25 C 1.50929 * 127.90104 * 179.89688 * 4 3 2 26 26 H 1.09005 * 109.47356 * 269.97710 * 1 2 3 27 27 H 1.09001 * 109.46593 * 29.97372 * 1 2 3 28 28 H 1.08994 * 109.47456 * 149.97334 * 1 2 3 29 29 H 1.09002 * 109.58630 * 257.22653 * 7 5 4 30 30 H 1.09001 * 109.70718 * 136.86652 * 7 5 4 31 31 H 0.96999 * 119.99694 * 95.00066 * 10 8 7 32 32 H 0.96995 * 120.00015 * 359.72369 * 13 11 10 33 33 H 1.09005 * 109.47306 * 299.99972 * 14 13 11 34 34 H 1.09002 * 109.47518 * 60.00210 * 14 13 11 35 35 H 1.09005 * 109.46767 * 299.99934 * 15 14 13 36 36 H 1.08996 * 109.47766 * 59.99412 * 15 14 13 37 37 H 0.97001 * 120.00302 * 179.97438 * 19 18 16 38 38 H 1.08993 * 109.51129 * 189.11216 * 24 8 7 39 39 H 1.09000 * 109.50369 * 309.24503 * 24 8 7 40 40 H 1.09005 * 109.71485 * 315.65244 * 25 4 3 41 41 H 1.08999 * 109.71751 * 76.24949 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2821 1.0866 0.0000 4 6 3.5363 0.7322 -0.0005 5 7 3.5896 -0.6135 0.0005 6 7 2.2674 -1.0664 -0.0005 7 6 4.8197 -1.4054 0.0029 8 6 5.9853 -0.5053 0.4287 9 1 5.8845 -0.2558 1.4851 10 7 7.2511 -1.2102 0.2121 11 6 7.7246 -2.0498 1.1541 12 8 7.1015 -2.2218 2.1838 13 7 8.8890 -2.6987 0.9545 14 6 9.4039 -3.6109 1.9786 15 6 10.7297 -4.2114 1.5067 16 6 11.2592 -5.1503 2.5599 17 1 10.7057 -5.3031 3.4746 18 6 12.4502 -5.8142 2.3557 19 7 13.1239 -5.6285 1.2416 20 14 13.1068 -6.9774 3.6615 21 1 12.1688 -7.0101 4.8123 22 1 13.2367 -8.3415 3.0892 23 1 14.4375 -6.5049 4.1214 24 6 5.9682 0.7806 -0.4032 25 6 4.7523 1.6262 -0.0029 26 1 -0.3634 -0.0004 1.0277 27 1 -0.3632 0.8903 -0.5134 28 1 -0.3634 -0.8897 -0.5142 29 1 5.0055 -1.7949 -0.9980 30 1 4.7222 -2.2336 0.7050 31 1 7.7484 -1.0727 -0.6093 32 1 9.3841 -2.5645 0.1313 33 1 9.5640 -3.0621 2.9067 34 1 8.6828 -4.4104 2.1490 35 1 10.5700 -4.7601 0.5784 36 1 11.4507 -3.4119 1.3365 37 1 13.9620 -6.0953 1.0981 38 1 6.8815 1.3459 -0.2184 39 1 5.9033 0.5283 -1.4617 40 1 4.6133 2.4342 -0.7213 41 1 4.9050 2.0420 0.9930 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273561100.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:33:22 Heat of formation + Delta-G solvation = 16.539334 kcal Electronic energy + Delta-G solvation = -22654.313943 eV Core-core repulsion = 19183.316110 eV Total energy + Delta-G solvation = -3470.997832 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.42655 -41.19708 -38.53661 -36.55101 -35.09777 -34.71718 -34.28167 -32.42395 -31.32935 -30.34500 -28.60176 -26.61917 -25.26990 -23.77667 -22.86285 -22.09711 -21.61703 -20.80734 -19.32712 -18.44348 -18.07949 -17.49941 -16.98662 -16.60490 -16.49737 -16.04134 -15.63438 -15.38912 -15.25215 -14.98450 -14.88592 -14.35951 -14.21330 -14.06909 -13.57258 -13.43244 -13.20067 -12.98219 -12.88178 -12.80111 -12.52166 -12.25826 -12.19846 -12.08590 -11.69687 -11.50898 -11.24609 -11.13541 -10.80066 -10.61470 -10.51627 -10.34451 -9.83939 -8.24305 -6.33805 0.53545 1.07314 1.40677 1.42308 1.54693 1.72535 1.79314 2.09212 2.40955 2.91184 3.10863 3.15719 3.30648 3.46245 3.71120 3.78237 3.90105 4.14132 4.28963 4.39562 4.45471 4.52907 4.56596 4.70792 4.74891 4.86096 4.87832 4.93654 4.93845 5.03910 5.26387 5.29249 5.31660 5.45036 5.51131 5.60981 5.77888 5.79560 6.00415 6.17720 6.79758 7.03596 7.09038 7.35510 7.54245 8.87573 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.038800 B = 0.002368 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.472523 B =11819.409491 C =12241.240793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.205 3.795 3 N -0.562 5.562 4 C 0.274 3.726 5 N -0.380 5.380 6 N -0.357 5.357 7 C 0.117 3.883 8 C 0.160 3.840 9 H 0.081 0.919 10 N -0.717 5.717 11 C 0.699 3.301 12 O -0.637 6.637 13 N -0.728 5.728 14 C 0.160 3.840 15 C 0.024 3.976 16 C -0.545 4.545 17 H 0.057 0.943 18 C 0.007 3.993 19 N -0.925 5.925 20 Si 0.963 3.037 21 H -0.267 1.267 22 H -0.278 1.278 23 H -0.277 1.277 24 C -0.122 4.122 25 C -0.033 4.033 26 H 0.093 0.907 27 H 0.100 0.900 28 H 0.089 0.911 29 H 0.104 0.896 30 H 0.071 0.929 31 H 0.421 0.579 32 H 0.410 0.590 33 H 0.044 0.956 34 H 0.041 0.959 35 H 0.010 0.990 36 H 0.012 0.988 37 H 0.265 0.735 38 H 0.126 0.874 39 H 0.098 0.902 40 H 0.136 0.864 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.184 17.031 -8.424 25.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.077 4.077 3 N -0.292 5.292 4 C -0.002 4.002 5 N -0.171 5.171 6 N -0.186 5.186 7 C -0.007 4.007 8 C 0.052 3.948 9 H 0.099 0.901 10 N -0.375 5.375 11 C 0.399 3.601 12 O -0.519 6.519 13 N -0.383 5.383 14 C 0.035 3.965 15 C -0.014 4.014 16 C -0.583 4.583 17 H 0.076 0.924 18 C -0.192 4.192 19 N -0.565 5.565 20 Si 0.788 3.212 21 H -0.191 1.191 22 H -0.203 1.203 23 H -0.202 1.202 24 C -0.160 4.160 25 C -0.073 4.073 26 H 0.111 0.889 27 H 0.118 0.882 28 H 0.108 0.892 29 H 0.122 0.878 30 H 0.089 0.911 31 H 0.259 0.741 32 H 0.246 0.754 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.028 0.972 36 H 0.030 0.970 37 H 0.074 0.926 38 H 0.145 0.855 39 H 0.117 0.883 40 H 0.154 0.846 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -17.888 16.318 -7.578 25.372 hybrid contribution 1.096 -1.130 0.032 1.574 sum -16.792 15.189 -7.546 23.867 Atomic orbital electron populations 1.20236 0.81430 1.05026 1.04687 1.25215 0.99877 0.85206 0.97380 1.70206 1.00611 1.31158 1.27179 1.25226 0.96068 0.84015 0.94893 1.50150 1.05393 1.06476 1.55035 1.77908 0.87679 1.24062 1.28963 1.22387 0.79399 0.94802 1.04107 1.20936 0.80725 0.91316 1.01803 0.90124 1.44697 1.23801 1.47318 1.21654 1.16175 0.81161 0.79258 0.83492 1.90903 1.61259 1.69876 1.29828 1.45178 1.22785 1.47181 1.23147 1.21074 0.95273 0.90465 0.89644 1.19132 0.90960 0.95092 0.96219 1.21495 1.06655 1.26095 1.04101 0.92447 1.25835 0.97018 0.98490 0.97809 1.70050 1.16046 1.43871 1.26507 0.85429 0.78264 0.78439 0.79111 1.19115 1.20321 1.20214 1.22044 1.00110 0.93097 1.00772 1.20605 0.84350 0.95561 1.06775 0.88861 0.88172 0.89230 0.87762 0.91051 0.74086 0.75420 0.93717 0.94008 0.97210 0.96998 0.92565 0.85536 0.88333 0.84558 0.86617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.85 10.51 71.24 0.75 -0.10 16 2 C 0.20 5.11 8.15 138.48 1.13 6.23 16 3 N -0.56 -13.85 11.18 -179.31 -2.01 -15.85 16 4 C 0.27 5.74 7.72 138.37 1.07 6.81 16 5 N -0.38 -9.36 4.04 -338.33 -1.37 -10.73 16 6 N -0.36 -10.27 12.74 -51.08 -0.65 -10.92 16 7 C 0.12 2.52 6.87 86.52 0.59 3.12 16 8 C 0.16 2.73 2.47 45.15 0.11 2.84 16 9 H 0.08 1.81 7.55 -2.38 -0.02 1.79 16 10 N -0.72 -13.05 5.08 -457.07 -2.32 -15.38 16 11 C 0.70 21.19 8.53 179.05 1.53 22.72 16 12 O -0.64 -25.56 16.00 -3.96 -0.06 -25.63 16 13 N -0.73 -22.94 5.56 -478.53 -2.66 -25.60 16 14 C 0.16 6.61 5.61 86.38 0.48 7.10 16 15 C 0.02 1.14 5.09 29.85 0.15 1.29 16 16 C -0.54 -29.90 9.11 25.60 0.23 -29.67 16 17 H 0.06 3.11 7.74 -2.91 -0.02 3.09 16 18 C 0.01 0.40 5.46 84.65 0.46 0.86 16 19 N -0.93 -53.17 13.29 21.45 0.28 -52.89 16 20 Si 0.96 43.16 29.54 68.60 2.03 45.19 16 21 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 22 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 23 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 24 C -0.12 -0.94 5.43 30.79 0.17 -0.77 16 25 C -0.03 -0.33 6.33 30.06 0.19 -0.14 16 26 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 27 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.42 4.47 8.62 -92.71 -0.80 3.67 16 32 H 0.41 10.42 8.49 -92.71 -0.79 9.63 16 33 H 0.04 1.94 8.14 -2.38 -0.02 1.92 16 34 H 0.04 1.83 8.14 -2.39 -0.02 1.82 16 35 H 0.01 0.49 8.14 -2.38 -0.02 0.47 16 36 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.27 14.32 8.31 -92.71 -0.77 13.55 16 38 H 0.13 0.42 8.14 -2.39 -0.02 0.40 16 39 H 0.10 0.50 8.12 -2.39 -0.02 0.48 16 40 H 0.14 0.74 8.14 -2.38 -0.02 0.72 16 41 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -78.30 346.57 -0.42 -78.72 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -0.53 Total: 12.79 kcal Atomic # 6 Polarization: 13.42 SS G_CDS: 6.87 Total: 20.29 kcal Atomic # 7 Polarization: -122.64 SS G_CDS: -8.72 Total: -131.36 kcal Atomic # 8 Polarization: -25.56 SS G_CDS: -0.06 Total: -25.63 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -78.30 -0.42 -78.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273561100.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.260 kcal (2) G-P(sol) polarization free energy of solvation -78.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds