Wall clock time and date at job start Tue Mar 31 2020 03:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.33460 * 125.49922 * 2 1 4 4 C 1.30333 * 109.72913 * 179.97438 * 3 2 1 5 5 N 1.34877 * 107.97979 * 359.94433 * 4 3 2 6 6 N 1.30978 * 125.49305 * 179.97438 * 2 1 3 7 7 C 1.46303 * 124.89058 * 179.73803 * 5 4 3 8 8 C 1.53301 * 108.89225 * 343.18716 * 7 5 4 9 9 H 1.09006 * 109.46790 * 290.05466 * 8 7 5 10 10 N 1.46500 * 109.46874 * 170.07138 * 8 7 5 11 11 C 1.34766 * 120.00587 * 84.99335 * 10 8 7 12 12 O 1.21585 * 119.99919 * 0.02562 * 11 10 8 13 13 N 1.34778 * 120.00607 * 179.97438 * 11 10 8 14 14 C 1.46497 * 120.00326 * 180.02562 * 13 11 10 15 15 C 1.53005 * 109.47158 * 180.02562 * 14 13 11 16 16 C 1.50698 * 109.46992 * 180.02562 * 15 14 13 17 17 H 1.07994 * 120.00355 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99365 * 179.97438 * 16 15 14 19 19 N 1.31507 * 120.00501 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99551 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47216 * 90.00223 * 20 18 16 22 22 H 1.48507 * 109.46927 * 210.00247 * 20 18 16 23 23 H 1.48496 * 109.47151 * 329.99867 * 20 18 16 24 24 C 1.53153 * 109.49292 * 50.06128 * 8 7 5 25 25 C 1.50920 * 127.90675 * 180.02562 * 4 3 2 26 26 H 1.08995 * 109.47607 * 90.02659 * 1 2 3 27 27 H 1.09004 * 109.47127 * 210.03317 * 1 2 3 28 28 H 1.09004 * 109.46652 * 330.02287 * 1 2 3 29 29 H 1.09002 * 109.58536 * 223.32689 * 7 5 4 30 30 H 1.08996 * 109.58788 * 103.04615 * 7 5 4 31 31 H 0.97004 * 119.99229 * 264.99658 * 10 8 7 32 32 H 0.97003 * 119.99742 * 0.02562 * 13 11 10 33 33 H 1.08998 * 109.47264 * 300.00101 * 14 13 11 34 34 H 1.08994 * 109.47443 * 60.00698 * 14 13 11 35 35 H 1.08995 * 109.47183 * 300.00333 * 15 14 13 36 36 H 1.09003 * 109.46861 * 59.99922 * 15 14 13 37 37 H 0.97007 * 120.00196 * 179.97438 * 19 18 16 38 38 H 1.08997 * 109.50885 * 50.75803 * 24 8 7 39 39 H 1.09002 * 109.50999 * 170.89693 * 24 8 7 40 40 H 1.09004 * 109.71832 * 44.35822 * 25 4 3 41 41 H 1.09000 * 109.71655 * 283.71006 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2820 1.0865 0.0000 4 6 3.5363 0.7323 0.0005 5 7 3.5883 -0.6155 0.0022 6 7 2.2675 -1.0664 0.0005 7 6 4.8197 -1.4054 -0.0023 8 6 5.9853 -0.5054 -0.4282 9 1 5.8848 -0.2565 -1.4847 10 7 7.2511 -1.2103 -0.2111 11 6 7.7248 -2.0503 -1.1525 12 8 7.1019 -2.2228 -2.1823 13 7 8.8896 -2.6984 -0.9531 14 6 9.4047 -3.6110 -1.9767 15 6 10.7304 -4.2113 -1.5042 16 6 11.2606 -5.1497 -2.5575 17 1 10.7073 -5.3030 -3.4721 18 6 12.4523 -5.8125 -2.3533 19 7 13.1259 -5.6263 -1.2393 20 14 13.1099 -6.9752 -3.6592 21 1 13.9765 -6.2223 -4.6011 22 1 13.9016 -8.0512 -3.0105 23 1 11.9745 -7.5763 -4.4038 24 6 5.9682 0.7808 0.4031 25 6 4.7522 1.6263 0.0013 26 1 -0.3634 -0.0005 -1.0276 27 1 -0.3633 -0.8897 0.5144 28 1 -0.3633 0.8902 0.5135 29 1 4.7207 -2.2325 -0.7053 30 1 5.0066 -1.7965 0.9978 31 1 7.7483 -1.0724 0.6103 32 1 9.3868 -2.5605 -0.1316 33 1 8.6840 -4.4110 -2.1462 34 1 9.5642 -3.0629 -2.9051 35 1 11.4513 -3.4117 -1.3343 36 1 10.5706 -4.7596 -0.5757 37 1 13.9641 -6.0929 -1.0955 38 1 5.9032 0.5291 1.4616 39 1 6.8815 1.3461 0.2179 40 1 4.6136 2.4351 0.7188 41 1 4.9050 2.0402 -0.9954 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273561103.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:33:31 Heat of formation + Delta-G solvation = 41.799478 kcal Electronic energy + Delta-G solvation = -22652.771667 eV Core-core repulsion = 19182.869197 eV Total energy + Delta-G solvation = -3469.902470 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -42.55956 -40.00050 -37.60015 -34.94082 -34.01019 -33.51531 -32.87947 -31.49944 -29.87336 -29.33774 -27.68296 -24.88141 -24.43023 -22.84281 -21.24327 -20.89635 -20.61636 -19.98360 -18.11299 -17.20143 -16.63143 -16.37475 -15.93341 -15.49411 -15.03852 -14.68310 -14.54463 -14.43885 -14.30796 -13.73265 -13.52014 -13.48140 -13.14532 -12.86948 -12.75559 -12.32196 -12.24110 -12.08226 -11.55212 -11.40990 -11.24754 -11.07300 -10.67238 -10.39717 -10.23675 -10.12135 -9.90489 -9.63436 -9.50144 -9.36836 -9.31787 -8.57319 -8.38107 -6.13393 -4.16201 1.40387 1.95000 2.64647 2.80196 3.27074 3.33455 3.34001 3.37858 3.59600 3.99102 4.11900 4.24274 4.38493 4.47053 4.58569 4.60906 4.81880 4.91143 5.14194 5.21784 5.23957 5.26143 5.30557 5.42518 5.50975 5.57563 5.60426 6.14884 6.18178 6.21182 6.27325 6.31369 6.58026 6.69422 6.85306 7.02187 7.49676 7.56759 7.85234 7.92736 8.16174 8.28117 8.77446 8.90122 9.48882 10.98153 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.038814 B = 0.002368 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.212496 B =11820.461402 C =12241.929455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.212 3.788 3 N -0.539 5.539 4 C 0.272 3.728 5 N -0.368 5.368 6 N -0.312 5.312 7 C 0.114 3.886 8 C 0.156 3.844 9 H 0.103 0.897 10 N -0.744 5.744 11 C 0.698 3.302 12 O -0.593 6.593 13 N -0.734 5.734 14 C 0.139 3.861 15 C 0.013 3.987 16 C -0.522 4.522 17 H 0.060 0.940 18 C 0.059 3.941 19 N -0.894 5.894 20 Si 0.897 3.103 21 H -0.279 1.279 22 H -0.286 1.286 23 H -0.272 1.272 24 C -0.136 4.136 25 C -0.035 4.035 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.104 0.896 30 H 0.090 0.910 31 H 0.400 0.600 32 H 0.395 0.605 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.022 0.978 36 H 0.022 0.978 37 H 0.262 0.738 38 H 0.080 0.920 39 H 0.099 0.901 40 H 0.109 0.891 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.343 15.583 7.655 24.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.070 4.070 3 N -0.267 5.267 4 C -0.004 4.004 5 N -0.159 5.159 6 N -0.141 5.141 7 C -0.010 4.010 8 C 0.048 3.952 9 H 0.121 0.879 10 N -0.401 5.401 11 C 0.398 3.602 12 O -0.471 6.471 13 N -0.387 5.387 14 C 0.016 3.984 15 C -0.024 4.024 16 C -0.560 4.560 17 H 0.078 0.922 18 C -0.143 4.143 19 N -0.533 5.533 20 Si 0.725 3.275 21 H -0.205 1.205 22 H -0.212 1.212 23 H -0.197 1.197 24 C -0.175 4.175 25 C -0.075 4.075 26 H 0.101 0.899 27 H 0.099 0.901 28 H 0.103 0.897 29 H 0.122 0.878 30 H 0.108 0.892 31 H 0.235 0.765 32 H 0.228 0.772 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.041 0.959 36 H 0.041 0.959 37 H 0.072 0.928 38 H 0.099 0.901 39 H 0.117 0.883 40 H 0.128 0.872 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -18.049 14.827 6.755 24.315 hybrid contribution 1.209 -0.713 0.168 1.413 sum -16.840 14.114 6.923 23.037 Atomic orbital electron populations 1.20064 0.83885 1.03882 1.03682 1.24423 0.98261 0.85493 0.98803 1.70143 0.99832 1.30901 1.25826 1.24348 0.95064 0.84036 0.96973 1.50101 1.05633 1.05784 1.54355 1.77908 0.86631 1.22651 1.26884 1.22418 0.79012 0.95304 1.04238 1.20871 0.82127 0.90105 1.02105 0.87897 1.45000 1.23748 1.49135 1.22197 1.16089 0.81853 0.79012 0.83266 1.90925 1.60220 1.68404 1.27544 1.45554 1.22039 1.47547 1.23556 1.21646 0.97252 0.90339 0.89136 1.19328 0.89674 0.95988 0.97459 1.21037 1.06174 1.25426 1.03402 0.92205 1.24996 0.96720 0.96888 0.95701 1.69949 1.15558 1.42918 1.24867 0.86504 0.79019 0.80480 0.81510 1.20537 1.21166 1.19714 1.22060 0.99323 0.95381 1.00707 1.20315 0.86257 0.95722 1.05215 0.89918 0.90088 0.89655 0.87776 0.89184 0.76534 0.77199 0.92644 0.92614 0.95933 0.95944 0.92828 0.90150 0.88270 0.87227 0.87738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.45 10.51 36.01 0.38 -0.07 16 2 C 0.21 2.66 8.15 -156.44 -1.27 1.39 16 3 N -0.54 -6.86 11.18 -7.99 -0.09 -6.95 16 4 C 0.27 3.03 7.72 -155.60 -1.20 1.82 16 5 N -0.37 -4.56 4.05 -58.25 -0.24 -4.80 16 6 N -0.31 -4.41 12.73 32.50 0.41 -3.99 16 7 C 0.11 1.24 6.87 -3.99 -0.03 1.21 16 8 C 0.16 1.45 2.47 -67.70 -0.17 1.28 16 9 H 0.10 1.18 7.55 -51.93 -0.39 0.79 16 10 N -0.74 -7.47 5.08 -58.45 -0.30 -7.77 16 11 C 0.70 10.79 8.53 -86.93 -0.74 10.05 16 12 O -0.59 -11.71 16.00 5.29 0.08 -11.63 16 13 N -0.73 -11.77 5.56 -65.23 -0.36 -12.13 16 14 C 0.14 2.84 5.61 -4.04 -0.02 2.82 16 15 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 16 C -0.52 -14.19 9.11 -34.44 -0.31 -14.51 16 17 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 19 N -0.89 -25.66 13.29 55.43 0.74 -24.93 16 20 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 24 C -0.14 -0.77 5.43 -26.42 -0.14 -0.92 16 25 C -0.03 -0.23 6.33 -27.54 -0.17 -0.40 16 26 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 30 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.40 2.77 8.62 -40.82 -0.35 2.42 16 32 H 0.39 5.28 8.49 -40.82 -0.35 4.93 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 38 H 0.08 0.39 8.12 -51.93 -0.42 -0.04 16 39 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.11 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 346.57 15.07 5.22 5.22 Total: -1.00 -35.19 346.57 -9.60 -44.79 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -6.13 Total: 1.72 kcal Atomic # 6 Polarization: 8.30 SS G_CDS: -3.93 Total: 4.37 kcal Atomic # 7 Polarization: -60.73 SS G_CDS: 0.17 Total: -60.57 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: 0.08 Total: -11.63 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -35.19 -9.60 -44.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273561103.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.588 kcal (2) G-P(sol) polarization free energy of solvation -35.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds