Wall clock time and date at job start Tue Mar 31 2020 02:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46505 * 109.47502 * 2 1 4 4 C 1.34946 * 126.04109 * 125.25919 * 3 2 1 5 5 C 1.35315 * 107.74546 * 180.15157 * 4 3 2 6 6 C 1.50703 * 126.03726 * 179.87604 * 5 4 3 7 7 H 1.08996 * 109.87052 * 25.16000 * 6 5 4 8 8 O 1.43743 * 109.87786 * 146.16998 * 6 5 4 9 9 C 1.44382 * 106.97781 * 146.08468 * 8 6 5 10 10 C 1.54998 * 103.48879 * 319.93952 * 9 8 6 11 11 C 1.54159 * 109.97360 * 264.06226 * 6 5 4 12 12 H 1.08996 * 110.52601 * 357.12209 * 11 6 5 13 13 C 1.50701 * 110.48339 * 119.78797 * 11 6 5 14 14 O 1.21293 * 120.00109 * 8.48609 * 13 11 6 15 15 N 1.34784 * 120.00031 * 188.48156 * 13 11 6 16 16 C 1.46496 * 119.99774 * 4.81349 * 15 13 11 17 17 C 1.37099 * 119.99531 * 184.81492 * 15 13 11 18 18 H 1.07996 * 120.00409 * 348.44621 * 17 15 13 19 19 C 1.38947 * 119.99439 * 168.44609 * 17 15 13 20 20 N 1.31417 * 120.00019 * 327.88279 * 19 17 15 21 21 Si 1.86803 * 120.00067 * 147.88628 * 19 17 15 22 22 H 1.48496 * 109.47127 * 94.98870 * 21 19 17 23 23 H 1.48497 * 109.47247 * 214.99189 * 21 19 17 24 24 H 1.48498 * 109.46794 * 334.99098 * 21 19 17 25 25 C 1.39864 * 107.91940 * 359.61045 * 5 4 3 26 26 N 1.30835 * 108.20641 * 0.24009 * 25 5 4 27 27 H 1.09002 * 109.47135 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46636 * 299.99990 * 1 2 3 29 29 H 1.08989 * 109.47268 * 59.99817 * 1 2 3 30 30 H 1.09001 * 109.47543 * 240.00015 * 2 1 3 31 31 H 1.09002 * 109.47522 * 119.99957 * 2 1 3 32 32 H 1.07997 * 126.12661 * 0.02562 * 4 3 2 33 33 H 1.08993 * 110.61624 * 201.43455 * 9 8 6 34 34 H 1.08997 * 110.75011 * 78.50323 * 9 8 6 35 35 H 1.08995 * 110.90529 * 155.22135 * 10 9 8 36 36 H 1.08999 * 110.90186 * 278.79027 * 10 9 8 37 37 H 1.09003 * 109.47102 * 26.78210 * 16 15 13 38 38 H 1.09004 * 109.46680 * 146.77331 * 16 15 13 39 39 H 1.08993 * 109.47211 * 266.77344 * 16 15 13 40 40 H 0.97000 * 119.99989 * 180.02562 * 20 19 17 41 41 H 1.08000 * 125.89949 * 180.22136 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8770 1.9198 0.8910 5 6 3.0715 3.2137 0.5461 6 6 3.9549 4.1999 1.2659 7 1 4.7389 3.6694 1.8062 8 8 4.5424 5.1101 0.3210 9 6 4.6595 6.3877 0.9832 10 6 3.3400 6.4998 1.7886 11 6 3.1152 5.0390 2.2494 12 1 2.0608 4.7735 2.1747 13 6 3.6096 4.8490 3.6602 14 8 4.6376 4.2389 3.8656 15 7 2.9095 5.3570 4.6938 16 6 1.6157 6.0016 4.4557 17 6 3.4082 5.2705 5.9680 18 1 4.2605 4.6396 6.1726 19 6 2.8171 5.9947 6.9959 20 7 2.2671 7.1617 6.7457 21 14 2.8045 5.3097 8.7338 22 1 3.9597 5.8565 9.4898 23 1 1.5412 5.6991 9.4102 24 1 2.9026 3.8288 8.6827 25 6 2.3126 3.4724 -0.5999 26 7 1.6809 2.3747 -0.9282 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.3266 1.4100 1.7303 33 1 4.7330 7.1933 0.2527 34 1 5.5198 6.3984 1.6524 35 1 3.4620 7.1633 2.6447 36 1 2.5227 6.8367 1.1510 37 1 1.1641 5.5879 3.5540 38 1 0.9583 5.8219 5.3065 39 1 1.7619 7.0743 4.3297 40 1 1.8547 7.6675 7.4634 41 1 2.2572 4.4155 -1.1233 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275441685.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:43 Heat of formation + Delta-G solvation = 11.351414 kcal Electronic energy + Delta-G solvation = -24171.898393 eV Core-core repulsion = 20668.382845 eV Total energy + Delta-G solvation = -3503.515548 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 1.87 seconds Orbital eigenvalues (eV) -41.15788 -39.50767 -37.50687 -34.69815 -34.48023 -32.20188 -31.30984 -30.81824 -30.01577 -27.37710 -26.27000 -24.77616 -23.82607 -22.60633 -21.79860 -20.52234 -19.90500 -18.63387 -17.18594 -16.90445 -16.21868 -15.45012 -15.43848 -15.25468 -14.64976 -14.38232 -14.16337 -14.01025 -13.85150 -13.75825 -12.95861 -12.63582 -12.46360 -12.28449 -12.24322 -12.04369 -11.84043 -11.50045 -11.46986 -11.31153 -10.96827 -10.92874 -10.74287 -10.64995 -10.46293 -10.30495 -10.16032 -9.28106 -9.26135 -8.99023 -8.45182 -8.08545 -7.78738 -6.47736 -3.78968 2.02670 2.57956 2.95934 3.11262 3.24021 3.31597 3.80401 4.09686 4.26822 4.51696 4.79746 4.81068 4.94358 4.97197 5.06169 5.13926 5.19306 5.30974 5.39721 5.43988 5.57984 5.64529 5.74897 5.83368 5.85234 5.90001 5.97602 6.08167 6.24028 6.28811 6.33946 6.47857 6.60039 6.73918 6.84911 7.03150 7.11627 7.31753 7.53880 7.85766 8.07133 8.43563 9.14726 9.40850 9.96447 10.58518 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.016398 B = 0.004651 C = 0.003984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.064229 B = 6018.744642 C = 7025.975250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.133 3.867 3 N -0.377 5.377 4 C 0.066 3.934 5 C -0.228 4.228 6 C 0.166 3.834 7 H 0.097 0.903 8 O -0.373 6.373 9 C 0.050 3.950 10 C -0.141 4.141 11 C -0.123 4.123 12 H 0.092 0.908 13 C 0.447 3.553 14 O -0.590 6.590 15 N -0.438 5.438 16 C 0.106 3.894 17 C -0.323 4.323 18 H 0.104 0.896 19 C 0.040 3.960 20 N -0.857 5.857 21 Si 0.906 3.094 22 H -0.278 1.278 23 H -0.282 1.282 24 H -0.269 1.269 25 C 0.070 3.930 26 N -0.305 5.305 27 H 0.072 0.928 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.094 0.906 32 H 0.175 0.825 33 H 0.088 0.912 34 H 0.063 0.937 35 H 0.086 0.914 36 H 0.076 0.924 37 H 0.034 0.966 38 H 0.063 0.937 39 H 0.057 0.943 40 H 0.268 0.732 41 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.116 -6.926 -11.356 13.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.011 3.989 3 N -0.160 5.160 4 C -0.080 4.080 5 C -0.239 4.239 6 C 0.107 3.893 7 H 0.115 0.885 8 O -0.292 6.292 9 C -0.026 4.026 10 C -0.179 4.179 11 C -0.145 4.145 12 H 0.110 0.890 13 C 0.236 3.764 14 O -0.476 6.476 15 N -0.156 5.156 16 C -0.038 4.038 17 C -0.450 4.450 18 H 0.122 0.878 19 C -0.165 4.165 20 N -0.494 5.494 21 Si 0.732 3.268 22 H -0.204 1.204 23 H -0.208 1.208 24 H -0.193 1.193 25 C -0.117 4.117 26 N -0.126 5.126 27 H 0.091 0.909 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.099 0.901 31 H 0.113 0.887 32 H 0.192 0.808 33 H 0.106 0.894 34 H 0.081 0.919 35 H 0.105 0.895 36 H 0.095 0.905 37 H 0.053 0.947 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -4.549 -7.826 -12.163 15.162 hybrid contribution 0.206 0.408 1.848 1.904 sum -4.343 -7.419 -10.315 13.427 Atomic orbital electron populations 1.22050 0.93955 1.02610 1.03650 1.21627 0.95956 0.77737 1.03546 1.48596 1.35909 1.10070 1.21429 1.22280 0.95240 0.94373 0.96120 1.20013 1.07552 0.94744 1.01617 1.20813 0.93221 0.88637 0.86637 0.88498 1.88789 1.82478 1.20552 1.37400 1.23487 0.97277 0.86028 0.95844 1.23073 0.98226 0.95911 1.00715 1.22506 1.01226 0.95900 0.94915 0.88972 1.19613 0.85636 0.85808 0.85379 1.90478 1.26253 1.46173 1.84683 1.43588 1.16375 1.49347 1.06241 1.21522 0.85774 0.97683 0.98851 1.19579 1.16586 1.26727 0.82078 0.87787 1.25143 0.97407 0.93958 1.00028 1.70197 1.36378 1.08468 1.34356 0.86256 0.77775 0.80174 0.82579 1.20391 1.20769 1.19311 1.23672 0.94816 0.97202 0.95962 1.77253 1.24326 0.97064 1.13921 0.90925 0.91973 0.91175 0.90072 0.88730 0.80816 0.89356 0.91905 0.89509 0.90496 0.94727 0.91773 0.92471 0.92177 0.80148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.42 10.10 37.16 0.38 -1.05 16 2 C 0.13 1.23 7.23 -4.04 -0.03 1.20 16 3 N -0.38 -5.11 3.68 -61.36 -0.23 -5.33 16 4 C 0.07 0.96 11.36 -17.22 -0.20 0.77 16 5 C -0.23 -3.69 4.96 -105.05 -0.52 -4.21 16 6 C 0.17 2.98 3.48 -27.28 -0.09 2.88 16 7 H 0.10 1.98 6.47 -51.93 -0.34 1.65 16 8 O -0.37 -6.48 10.89 -35.23 -0.38 -6.86 16 9 C 0.05 0.79 7.72 38.21 0.29 1.08 16 10 C -0.14 -2.30 6.28 -24.72 -0.16 -2.46 16 11 C -0.12 -2.29 2.17 -90.21 -0.20 -2.49 16 12 H 0.09 1.65 6.25 -51.93 -0.32 1.32 16 13 C 0.45 10.57 6.79 -10.98 -0.07 10.50 16 14 O -0.59 -15.78 14.90 5.55 0.08 -15.70 16 15 N -0.44 -10.91 3.03 -122.20 -0.37 -11.28 16 16 C 0.11 2.29 8.08 59.84 0.48 2.77 16 17 C -0.32 -8.84 9.34 -14.93 -0.14 -8.97 16 18 H 0.10 3.02 7.38 -52.49 -0.39 2.63 16 19 C 0.04 1.04 4.66 -17.47 -0.08 0.96 16 20 N -0.86 -22.26 11.36 55.50 0.63 -21.63 16 21 Si 0.91 20.10 29.66 -169.99 -5.04 15.06 16 22 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 23 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 24 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 25 C 0.07 1.06 11.63 -17.37 -0.20 0.86 16 26 N -0.30 -4.65 12.42 30.62 0.38 -4.27 16 27 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.69 8.14 -51.94 -0.42 0.27 16 30 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.09 0.68 8.07 -51.93 -0.42 0.26 16 32 H 0.17 2.24 8.06 -52.49 -0.42 1.82 16 33 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.09 1.56 7.64 -51.93 -0.40 1.16 16 36 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.03 0.63 6.08 -51.93 -0.32 0.32 16 38 H 0.06 1.46 6.97 -51.93 -0.36 1.10 16 39 H 0.06 1.26 7.74 -51.93 -0.40 0.86 16 40 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 41 H 0.18 2.41 8.06 -52.49 -0.42 1.99 16 LS Contribution 339.05 15.07 5.11 5.11 Total: -1.00 -31.85 339.05 -6.24 -38.09 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -5.88 Total: 4.97 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: -0.53 Total: 1.85 kcal Atomic # 7 Polarization: -42.92 SS G_CDS: 0.42 Total: -42.51 kcal Atomic # 8 Polarization: -22.26 SS G_CDS: -0.30 Total: -22.56 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.04 Total: 15.06 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.85 -6.24 -38.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275441685.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.437 kcal (2) G-P(sol) polarization free energy of solvation -31.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.87 seconds