Wall clock time and date at job start Tue Mar 31 2020 02:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46505 * 109.47502 * 2 1 4 4 C 1.34946 * 126.04109 * 125.25919 * 3 2 1 5 5 C 1.35315 * 107.74546 * 180.15157 * 4 3 2 6 6 C 1.50703 * 126.03726 * 179.87604 * 5 4 3 7 7 H 1.08996 * 109.87052 * 25.16000 * 6 5 4 8 8 O 1.43743 * 109.87786 * 146.16998 * 6 5 4 9 9 C 1.44382 * 106.97781 * 146.08468 * 8 6 5 10 10 C 1.54998 * 103.48879 * 319.93952 * 9 8 6 11 11 C 1.54159 * 109.97360 * 264.06226 * 6 5 4 12 12 H 1.08996 * 110.52601 * 357.12209 * 11 6 5 13 13 C 1.50701 * 110.48339 * 119.78797 * 11 6 5 14 14 O 1.21293 * 120.00109 * 8.48609 * 13 11 6 15 15 N 1.34784 * 120.00031 * 188.48156 * 13 11 6 16 16 C 1.46496 * 119.99774 * 4.81349 * 15 13 11 17 17 C 1.37099 * 119.99531 * 184.81492 * 15 13 11 18 18 H 1.07996 * 120.00409 * 348.44621 * 17 15 13 19 19 C 1.38947 * 119.99439 * 168.44609 * 17 15 13 20 20 N 1.31417 * 120.00019 * 327.88279 * 19 17 15 21 21 Si 1.86803 * 120.00067 * 147.88628 * 19 17 15 22 22 H 1.48496 * 109.47127 * 94.98870 * 21 19 17 23 23 H 1.48497 * 109.47247 * 214.99189 * 21 19 17 24 24 H 1.48498 * 109.46794 * 334.99098 * 21 19 17 25 25 C 1.39864 * 107.91940 * 359.61045 * 5 4 3 26 26 N 1.30835 * 108.20641 * 0.24009 * 25 5 4 27 27 H 1.09002 * 109.47135 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46636 * 299.99990 * 1 2 3 29 29 H 1.08989 * 109.47268 * 59.99817 * 1 2 3 30 30 H 1.09001 * 109.47543 * 240.00015 * 2 1 3 31 31 H 1.09002 * 109.47522 * 119.99957 * 2 1 3 32 32 H 1.07997 * 126.12661 * 0.02562 * 4 3 2 33 33 H 1.08993 * 110.61624 * 201.43455 * 9 8 6 34 34 H 1.08997 * 110.75011 * 78.50323 * 9 8 6 35 35 H 1.08995 * 110.90529 * 155.22135 * 10 9 8 36 36 H 1.08999 * 110.90186 * 278.79027 * 10 9 8 37 37 H 1.09003 * 109.47102 * 26.78210 * 16 15 13 38 38 H 1.09004 * 109.46680 * 146.77331 * 16 15 13 39 39 H 1.08993 * 109.47211 * 266.77344 * 16 15 13 40 40 H 0.97000 * 119.99989 * 180.02562 * 20 19 17 41 41 H 1.08000 * 125.89949 * 180.22136 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8770 1.9198 0.8910 5 6 3.0715 3.2137 0.5461 6 6 3.9549 4.1999 1.2659 7 1 4.7389 3.6694 1.8062 8 8 4.5424 5.1101 0.3210 9 6 4.6595 6.3877 0.9832 10 6 3.3400 6.4998 1.7886 11 6 3.1152 5.0390 2.2494 12 1 2.0608 4.7735 2.1747 13 6 3.6096 4.8490 3.6602 14 8 4.6376 4.2389 3.8656 15 7 2.9095 5.3570 4.6938 16 6 1.6157 6.0016 4.4557 17 6 3.4082 5.2705 5.9680 18 1 4.2605 4.6396 6.1726 19 6 2.8171 5.9947 6.9959 20 7 2.2671 7.1617 6.7457 21 14 2.8045 5.3097 8.7338 22 1 3.9597 5.8565 9.4898 23 1 1.5412 5.6991 9.4102 24 1 2.9026 3.8288 8.6827 25 6 2.3126 3.4724 -0.5999 26 7 1.6809 2.3747 -0.9282 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.3266 1.4100 1.7303 33 1 4.7330 7.1933 0.2527 34 1 5.5198 6.3984 1.6524 35 1 3.4620 7.1633 2.6447 36 1 2.5227 6.8367 1.1510 37 1 1.1641 5.5879 3.5540 38 1 0.9583 5.8219 5.3065 39 1 1.7619 7.0743 4.3297 40 1 1.8547 7.6675 7.4634 41 1 2.2572 4.4155 -1.1233 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275441685.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:42 Heat of formation + Delta-G solvation = -9.165053 kcal Electronic energy + Delta-G solvation = -24172.788054 eV Core-core repulsion = 20668.382845 eV Total energy + Delta-G solvation = -3504.405209 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.31782 -41.06032 -39.15878 -36.64787 -35.36682 -33.99651 -32.92056 -32.09178 -30.99754 -28.74737 -28.03671 -26.58233 -24.77076 -24.00275 -23.21519 -21.61061 -21.13235 -20.28886 -18.89608 -18.37632 -17.79477 -17.06453 -16.67423 -16.35738 -16.32840 -15.84295 -15.65133 -15.59659 -15.20236 -14.75875 -14.30891 -14.11533 -13.87876 -13.63929 -13.41558 -13.29131 -13.21526 -13.01896 -12.94359 -12.68978 -12.52479 -12.37114 -12.18247 -12.11207 -12.07238 -11.90097 -11.54418 -10.95793 -10.67312 -10.34688 -10.25876 -9.76920 -9.31600 -8.45965 -5.85561 0.90612 1.32706 1.42194 1.54906 1.62053 1.77094 1.97622 2.27903 2.90215 2.99550 3.16237 3.59354 3.71015 3.90558 3.94993 3.98307 4.10381 4.16271 4.23427 4.33057 4.40976 4.42369 4.53416 4.61542 4.67048 4.81589 4.84131 4.91177 4.92977 4.99073 5.04619 5.13650 5.22753 5.24503 5.26884 5.49052 5.70318 5.93091 6.07107 6.11317 6.46094 6.73561 7.16520 7.47730 8.04773 8.59526 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.016398 B = 0.004651 C = 0.003984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.064229 B = 6018.744642 C = 7025.975250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.120 3.880 3 N -0.371 5.371 4 C 0.065 3.935 5 C -0.250 4.250 6 C 0.176 3.824 7 H 0.064 0.936 8 O -0.375 6.375 9 C 0.049 3.951 10 C -0.134 4.134 11 C -0.113 4.113 12 H 0.105 0.895 13 C 0.441 3.559 14 O -0.631 6.631 15 N -0.452 5.452 16 C 0.116 3.884 17 C -0.364 4.364 18 H 0.073 0.927 19 C 0.014 3.986 20 N -0.871 5.871 21 Si 0.970 3.030 22 H -0.275 1.275 23 H -0.266 1.266 24 H -0.274 1.274 25 C 0.068 3.932 26 N -0.319 5.319 27 H 0.101 0.899 28 H 0.048 0.952 29 H 0.055 0.945 30 H 0.097 0.903 31 H 0.118 0.882 32 H 0.186 0.814 33 H 0.128 0.872 34 H 0.040 0.960 35 H 0.068 0.932 36 H 0.113 0.887 37 H 0.069 0.931 38 H 0.049 0.951 39 H 0.051 0.949 40 H 0.276 0.724 41 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.627 -7.208 -12.105 15.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.001 3.999 3 N -0.154 5.154 4 C -0.083 4.083 5 C -0.262 4.262 6 C 0.116 3.884 7 H 0.082 0.918 8 O -0.294 6.294 9 C -0.027 4.027 10 C -0.172 4.172 11 C -0.135 4.135 12 H 0.123 0.877 13 C 0.231 3.769 14 O -0.519 6.519 15 N -0.169 5.169 16 C -0.027 4.027 17 C -0.491 4.491 18 H 0.091 0.909 19 C -0.191 4.191 20 N -0.507 5.507 21 Si 0.794 3.206 22 H -0.201 1.201 23 H -0.190 1.190 24 H -0.199 1.199 25 C -0.118 4.118 26 N -0.141 5.141 27 H 0.120 0.880 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.115 0.885 31 H 0.136 0.864 32 H 0.203 0.797 33 H 0.146 0.854 34 H 0.058 0.942 35 H 0.086 0.914 36 H 0.131 0.869 37 H 0.087 0.913 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.086 0.914 41 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -6.092 -8.099 -12.929 16.428 hybrid contribution 0.717 0.457 2.071 2.239 sum -5.375 -7.642 -10.858 14.325 Atomic orbital electron populations 1.22007 0.93343 1.04063 1.02195 1.22072 0.96483 0.75869 1.05508 1.48955 1.34981 1.11075 1.20366 1.22519 0.95070 0.94281 0.96399 1.19927 1.08549 0.95104 1.02633 1.20508 0.92425 0.88800 0.86634 0.91829 1.88792 1.82482 1.21049 1.37125 1.23617 0.96118 0.86482 0.96512 1.23096 0.99799 0.93739 1.00600 1.22433 1.01604 0.97937 0.91512 0.87677 1.20488 0.84968 0.84321 0.87119 1.90445 1.28107 1.47614 1.85761 1.43792 1.17484 1.49763 1.05894 1.21483 0.84246 0.97272 0.99731 1.19460 1.17460 1.27950 0.84191 0.90893 1.25821 0.96490 0.93701 1.03108 1.70214 1.36065 1.08654 1.35777 0.85309 0.78329 0.78961 0.78040 1.20107 1.19037 1.19876 1.23888 0.94415 0.97905 0.95574 1.77215 1.24723 0.97477 1.14646 0.88047 0.93317 0.92609 0.88530 0.86401 0.79710 0.85447 0.94164 0.91367 0.86893 0.91306 0.93180 0.93065 0.91397 0.78623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.41 10.10 71.98 0.73 -1.68 16 2 C 0.12 1.96 7.23 86.38 0.62 2.58 16 3 N -0.37 -9.46 3.68 -348.05 -1.28 -10.74 16 4 C 0.06 1.84 11.36 83.54 0.95 2.79 16 5 C -0.25 -7.92 4.96 -20.14 -0.10 -8.02 16 6 C 0.18 6.31 3.48 30.24 0.11 6.41 16 7 H 0.06 2.72 6.47 -2.39 -0.02 2.70 16 8 O -0.38 -12.68 10.89 -148.98 -1.62 -14.31 16 9 C 0.05 1.48 7.72 72.67 0.56 2.04 16 10 C -0.13 -4.18 6.28 31.90 0.20 -3.98 16 11 C -0.11 -4.15 2.17 -10.53 -0.02 -4.17 16 12 H 0.11 3.59 6.25 -2.39 -0.01 3.57 16 13 C 0.44 21.41 6.79 87.66 0.59 22.00 16 14 O -0.63 -35.41 14.90 -3.07 -0.05 -35.46 16 15 N -0.45 -22.98 3.03 -658.89 -1.99 -24.98 16 16 C 0.12 4.97 8.08 127.77 1.03 6.01 16 17 C -0.36 -20.53 9.34 84.04 0.78 -19.75 16 18 H 0.07 4.48 7.38 -2.91 -0.02 4.46 16 19 C 0.01 0.71 4.66 84.92 0.40 1.11 16 20 N -0.87 -44.99 11.36 21.66 0.25 -44.74 16 21 Si 0.97 41.31 29.66 68.60 2.03 43.35 16 22 H -0.28 -11.58 7.11 99.48 0.71 -10.88 16 23 H -0.27 -10.57 7.11 99.48 0.71 -9.87 16 24 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 25 C 0.07 1.96 11.63 85.24 0.99 2.95 16 26 N -0.32 -9.24 12.42 -57.03 -0.71 -9.94 16 27 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.12 1.38 8.07 -2.39 -0.02 1.36 16 32 H 0.19 4.69 8.06 -2.91 -0.02 4.67 16 33 H 0.13 2.86 8.14 -2.39 -0.02 2.84 16 34 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.07 2.41 7.64 -2.39 -0.02 2.39 16 36 H 0.11 2.74 8.14 -2.39 -0.02 2.72 16 37 H 0.07 2.42 6.08 -2.39 -0.01 2.41 16 38 H 0.05 2.26 6.97 -2.38 -0.02 2.24 16 39 H 0.05 2.24 7.74 -2.39 -0.02 2.22 16 40 H 0.28 13.24 8.31 -92.71 -0.77 12.47 16 41 H 0.20 4.80 8.06 -2.91 -0.02 4.78 16 Total: -1.00 -70.63 339.05 4.50 -66.13 By element: Atomic # 1 Polarization: 21.36 SS G_CDS: 1.03 Total: 22.39 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: 6.84 Total: 8.30 kcal Atomic # 7 Polarization: -86.66 SS G_CDS: -3.74 Total: -90.40 kcal Atomic # 8 Polarization: -48.10 SS G_CDS: -1.67 Total: -49.76 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 2.03 Total: 43.35 kcal Total: -70.63 4.50 -66.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275441685.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.964 kcal (2) G-P(sol) polarization free energy of solvation -70.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds