Wall clock time and date at job start Tue Mar 31 2020 03:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46504 * 120.00258 * 2 1 4 4 C 1.50706 * 109.46991 * 89.99892 * 3 2 1 5 5 H 1.07998 * 119.99734 * 0.02562 * 4 3 2 6 6 C 1.37877 * 119.99941 * 180.02562 * 4 3 2 7 7 N 1.31517 * 119.99949 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 120.00084 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.47065 * 89.99788 * 8 6 4 10 10 H 1.48498 * 109.46756 * 210.00184 * 8 6 4 11 11 H 1.48506 * 109.46837 * 329.99989 * 8 6 4 12 12 C 1.34782 * 119.99817 * 180.27612 * 2 1 3 13 13 O 1.21277 * 119.99899 * 184.95354 * 12 2 1 14 14 C 1.50693 * 119.99878 * 4.95281 * 12 2 1 15 15 H 1.09003 * 110.44079 * 330.33130 * 14 12 2 16 16 C 1.54814 * 110.48811 * 92.87716 * 14 12 2 17 17 C 1.54998 * 102.08849 * 97.79483 * 16 14 12 18 18 O 1.44385 * 103.49386 * 37.02642 * 17 16 14 19 19 C 1.43744 * 106.97175 * 319.93697 * 18 17 16 20 20 H 1.08999 * 109.87969 * 267.08796 * 19 18 17 21 21 C 1.50701 * 109.87835 * 145.93613 * 19 18 17 22 22 C 1.39870 * 126.03984 * 326.86620 * 21 19 18 23 23 N 1.30835 * 108.19945 * 179.81533 * 22 21 19 24 24 N 1.40083 * 108.20698 * 0.43323 * 23 22 21 25 25 C 1.46498 * 126.03843 * 179.69814 * 24 23 22 26 26 C 1.34945 * 107.92457 * 359.72220 * 24 23 22 27 27 H 1.09005 * 109.47223 * 264.41482 * 1 2 3 28 28 H 1.09002 * 109.47069 * 24.40933 * 1 2 3 29 29 H 1.08999 * 109.47313 * 144.41287 * 1 2 3 30 30 H 1.08997 * 109.46911 * 209.99518 * 3 2 1 31 31 H 1.08995 * 109.47034 * 330.00297 * 3 2 1 32 32 H 0.96992 * 119.99707 * 179.97438 * 7 6 4 33 33 H 1.09004 * 110.90902 * 215.98916 * 16 14 12 34 34 H 1.08988 * 110.90647 * 339.59872 * 16 14 12 35 35 H 1.09002 * 110.61686 * 155.52467 * 17 16 14 36 36 H 1.08994 * 110.62307 * 278.52096 * 17 16 14 37 37 H 1.08005 * 125.89871 * 359.97438 * 22 21 19 38 38 H 1.09003 * 109.47264 * 270.02724 * 25 24 23 39 39 H 1.09007 * 109.47244 * 30.02345 * 25 24 23 40 40 H 1.09002 * 109.47550 * 150.02654 * 25 24 23 41 41 H 1.07998 * 126.12471 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7038 1.4209 5 1 2.0981 1.0957 2.2417 6 6 3.1261 2.8779 1.6728 7 7 3.5535 3.6180 0.6732 8 14 3.4380 3.4168 3.4340 9 1 4.7335 2.8601 3.8999 10 1 3.4852 4.8997 3.4968 11 1 2.3433 2.9189 4.3052 12 6 2.1389 -1.1673 -0.0056 13 8 3.3482 -1.1697 0.0851 14 6 1.3896 -2.4693 -0.1246 15 1 0.3953 -2.3776 0.3128 16 6 1.2913 -2.9044 -1.6070 17 6 2.4572 -3.9189 -1.7254 18 8 2.4405 -4.6013 -0.4531 19 6 2.1766 -3.6083 0.5521 20 1 3.1161 -3.2244 0.9496 21 6 1.3546 -4.2096 1.6630 22 6 0.3858 -5.2085 1.5218 23 7 -0.1064 -5.4705 2.7054 24 7 0.5276 -4.6384 3.6371 25 6 0.2677 -4.6033 5.0784 26 6 1.4195 -3.8745 2.9724 27 1 -0.3634 -0.1000 1.0228 28 1 -0.3633 0.9358 -0.4247 29 1 -0.3634 -0.8357 -0.5980 30 1 3.1500 1.1383 -0.5137 31 1 1.6085 2.0284 -0.5138 32 1 4.0296 4.4442 0.8505 33 1 0.3345 -3.3862 -1.8085 34 1 1.4455 -2.0553 -2.2727 35 1 2.2744 -4.6204 -2.5395 36 1 3.4046 -3.3998 -1.8702 37 1 0.0961 -5.6834 0.5961 38 1 -0.5195 -3.8792 5.2882 39 1 -0.0480 -5.5909 5.4149 40 1 1.1773 -4.3138 5.6047 41 1 2.0690 -3.1295 3.4076 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275519985.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:03:40 Heat of formation + Delta-G solvation = 6.689371 kcal Electronic energy + Delta-G solvation = -24136.879094 eV Core-core repulsion = 20633.161385 eV Total energy + Delta-G solvation = -3503.717710 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.31166 -39.88871 -37.87819 -34.83679 -33.39767 -32.79664 -31.94992 -31.11957 -28.55296 -27.80250 -26.41178 -25.72645 -23.65609 -22.63067 -21.62129 -20.93017 -20.09046 -18.44077 -17.29999 -16.61708 -16.45289 -15.83474 -15.47181 -15.38903 -14.82882 -14.81740 -14.37545 -14.14338 -13.97621 -13.25667 -13.03756 -12.90278 -12.74460 -12.47640 -12.39431 -12.16151 -11.96814 -11.81252 -11.44814 -11.27484 -11.08875 -10.96966 -10.89663 -10.59231 -10.57593 -10.18388 -9.66423 -9.53924 -9.40791 -8.93608 -8.46040 -8.32714 -7.67889 -6.06883 -4.11301 1.87333 2.49162 2.76754 3.28227 3.29294 3.34617 3.37140 3.83933 4.11326 4.41961 4.50290 4.76744 4.87283 4.93749 4.99327 5.00968 5.13999 5.24641 5.25897 5.30498 5.42928 5.44336 5.59703 5.64587 5.69135 5.79653 5.89869 5.92788 6.01130 6.11792 6.19377 6.29261 6.65858 6.93580 6.99797 7.07024 7.38583 7.50946 7.69531 7.89056 8.20643 8.37118 8.86763 9.04451 9.53554 11.01334 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.013994 B = 0.005121 C = 0.004128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.338728 B = 5466.182627 C = 6780.854665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.600 5.600 3 C 0.246 3.754 4 C -0.524 4.524 5 H 0.056 0.944 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.897 3.103 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.275 1.275 12 C 0.512 3.488 13 O -0.536 6.536 14 C -0.139 4.139 15 H 0.101 0.899 16 C -0.138 4.138 17 C 0.049 3.951 18 O -0.368 6.368 19 C 0.172 3.828 20 H 0.093 0.907 21 C -0.236 4.236 22 C 0.072 3.928 23 N -0.306 5.306 24 N -0.378 5.378 25 C 0.103 3.897 26 C 0.070 3.930 27 H 0.047 0.953 28 H 0.070 0.930 29 H 0.055 0.945 30 H 0.042 0.958 31 H 0.032 0.968 32 H 0.263 0.737 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.092 0.908 36 H 0.067 0.933 37 H 0.183 0.817 38 H 0.074 0.926 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.507 -14.873 0.785 17.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.331 5.331 3 C 0.127 3.873 4 C -0.562 4.562 5 H 0.074 0.926 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.725 3.275 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.200 1.200 12 C 0.298 3.702 13 O -0.414 6.414 14 C -0.161 4.161 15 H 0.119 0.881 16 C -0.176 4.176 17 C -0.028 4.028 18 O -0.287 6.287 19 C 0.113 3.887 20 H 0.110 0.890 21 C -0.247 4.247 22 C -0.114 4.114 23 N -0.127 5.127 24 N -0.160 5.160 25 C -0.038 4.038 26 C -0.076 4.076 27 H 0.066 0.934 28 H 0.089 0.911 29 H 0.073 0.927 30 H 0.060 0.940 31 H 0.050 0.950 32 H 0.073 0.927 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.110 0.890 36 H 0.085 0.915 37 H 0.200 0.800 38 H 0.093 0.907 39 H 0.106 0.894 40 H 0.106 0.894 41 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -8.606 -15.590 1.684 17.887 hybrid contribution 0.585 1.324 0.576 1.558 sum -8.021 -14.266 2.260 16.521 Atomic orbital electron populations 1.21636 0.81470 1.01914 1.00845 1.48129 1.06136 1.07746 1.71134 1.19321 0.92441 0.78018 0.97568 1.21401 1.36402 1.06164 0.92278 0.92554 1.24930 0.95399 0.96399 0.97375 1.69925 1.38434 1.14382 1.30699 0.86515 0.78716 0.77607 0.84670 1.20528 1.21123 1.20010 1.20016 0.87861 0.84733 0.77555 1.90668 1.14062 1.86823 1.49828 1.22782 1.01250 0.94554 0.97524 0.88091 1.23028 1.00119 0.99957 0.94513 1.23544 0.98031 0.94502 0.86707 1.88832 1.92622 1.31704 1.15511 1.20709 0.96375 0.85355 0.86311 0.88978 1.19937 1.05408 1.05596 0.93807 1.23664 0.94902 0.96668 0.96163 1.77324 1.21070 1.15916 0.98386 1.48424 1.30472 1.29498 1.07632 1.21843 1.02933 1.04122 0.74950 1.22312 0.95322 0.97409 0.92554 0.93397 0.91114 0.92679 0.93958 0.95000 0.92708 0.89842 0.89901 0.88981 0.91456 0.79997 0.90745 0.89428 0.89439 0.80630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.35 9.87 59.85 0.59 1.94 16 2 N -0.60 -12.44 2.86 -182.95 -0.52 -12.96 16 3 C 0.25 6.32 5.17 -5.19 -0.03 6.29 16 4 C -0.52 -14.67 9.39 -34.44 -0.32 -14.99 16 5 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 6 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 7 N -0.90 -26.35 13.29 55.43 0.74 -25.62 16 8 Si 0.90 21.60 29.54 -169.99 -5.02 16.57 16 9 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 10 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 12 C 0.51 10.34 6.66 -10.99 -0.07 10.26 16 13 O -0.54 -13.07 15.30 5.56 0.09 -12.98 16 14 C -0.14 -2.11 2.15 -90.24 -0.19 -2.30 16 15 H 0.10 1.42 6.12 -51.93 -0.32 1.10 16 16 C -0.14 -1.71 6.62 -24.72 -0.16 -1.87 16 17 C 0.05 0.62 7.72 38.21 0.29 0.92 16 18 O -0.37 -5.52 10.89 -35.23 -0.38 -5.91 16 19 C 0.17 2.68 3.43 -27.31 -0.09 2.59 16 20 H 0.09 1.68 6.79 -51.93 -0.35 1.32 16 21 C -0.24 -3.41 4.95 -105.05 -0.52 -3.93 16 22 C 0.07 0.99 11.62 -17.37 -0.20 0.78 16 23 N -0.31 -4.35 12.58 30.63 0.39 -3.97 16 24 N -0.38 -4.79 4.01 -68.16 -0.27 -5.06 16 25 C 0.10 0.84 11.47 59.85 0.69 1.52 16 26 C 0.07 0.95 11.40 -17.23 -0.20 0.76 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.07 1.07 7.83 -51.93 -0.41 0.66 16 29 H 0.05 0.69 6.55 -51.93 -0.34 0.35 16 30 H 0.04 1.22 7.49 -51.93 -0.39 0.83 16 31 H 0.03 0.83 7.86 -51.93 -0.41 0.42 16 32 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 33 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.08 1.05 7.85 -51.94 -0.41 0.64 16 35 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.18 2.09 8.06 -52.48 -0.42 1.66 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.18 2.13 8.06 -52.49 -0.42 1.71 16 LS Contribution 345.40 15.07 5.21 5.21 Total: -1.00 -34.76 345.40 -6.08 -40.84 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -5.97 Total: 0.30 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: -0.32 Total: 3.59 kcal Atomic # 7 Polarization: -47.94 SS G_CDS: 0.33 Total: -47.61 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: -0.30 Total: -18.89 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -34.76 -6.08 -40.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275519985.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.529 kcal (2) G-P(sol) polarization free energy of solvation -34.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds