Wall clock time and date at job start Tue Mar 31 2020 03:01:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47478 * 111.35127 * 3 2 1 5 5 C 1.36932 * 120.00063 * 263.04002 * 4 3 2 6 6 H 1.08000 * 119.99847 * 202.30018 * 5 4 3 7 7 C 1.38813 * 120.00315 * 22.30446 * 5 4 3 8 8 N 1.31625 * 119.99867 * 8.78544 * 7 5 4 9 9 Si 1.86797 * 120.00283 * 188.78605 * 7 5 4 10 10 H 1.48506 * 109.46840 * 89.99862 * 9 7 5 11 11 H 1.48494 * 109.47214 * 209.99705 * 9 7 5 12 12 H 1.48503 * 109.47070 * 329.99847 * 9 7 5 13 13 C 1.46507 * 119.99901 * 83.03645 * 4 3 2 14 14 C 1.50693 * 109.46886 * 90.00125 * 13 4 3 15 15 O 1.21280 * 120.00116 * 0.02562 * 14 13 4 16 16 N 1.34780 * 120.00031 * 179.97438 * 14 13 4 17 17 C 1.46967 * 120.59359 * 180.02562 * 16 14 13 18 18 C 1.53371 * 108.63316 * 235.24970 * 17 16 14 19 19 N 1.46963 * 108.63723 * 310.57986 * 18 17 16 20 20 C 1.34781 * 120.59150 * 235.20696 * 19 18 17 21 21 C 1.50692 * 120.00283 * 4.69289 * 20 19 18 22 22 O 1.21287 * 119.99589 * 184.69253 * 20 19 18 23 23 C 1.46961 * 118.81617 * 55.47502 * 19 18 17 24 24 C 1.46963 * 120.59165 * 0.02825 * 16 14 13 25 25 H 4.40644 * 5.51480 * 180.02562 * 4 1 2 26 26 H 1.09006 * 109.46918 * 351.34911 * 3 2 1 27 27 H 1.08995 * 109.47050 * 231.35646 * 3 2 1 28 28 H 0.96992 * 119.99681 * 179.97438 * 8 7 5 29 29 H 1.08998 * 109.46727 * 330.00240 * 13 4 3 30 30 H 1.08992 * 109.47059 * 210.00604 * 13 4 3 31 31 H 1.08996 * 109.60788 * 115.50700 * 17 16 14 32 32 H 1.09003 * 109.61296 * 354.99289 * 17 16 14 33 33 H 1.09005 * 109.60896 * 190.83211 * 18 17 16 34 34 H 1.09001 * 109.75175 * 70.40384 * 18 17 16 35 35 H 1.09000 * 109.47219 * 84.55355 * 21 20 19 36 36 H 1.09001 * 109.47399 * 204.55661 * 21 20 19 37 37 H 1.09004 * 109.47040 * 324.55603 * 21 20 19 38 38 H 1.09005 * 109.60903 * 64.26559 * 23 19 18 39 39 H 1.08993 * 109.61480 * 184.78279 * 23 19 18 40 40 H 1.09003 * 109.60799 * 244.49325 * 24 16 14 41 41 H 1.09003 * 109.60956 * 4.83317 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1342 0.5037 -1.2863 5 6 3.4983 -0.3749 -2.2715 6 1 4.1742 -0.0602 -3.0529 7 6 2.9987 -1.6700 -2.2660 8 7 2.0464 -2.0044 -1.4211 9 14 3.6780 -2.9382 -3.4574 10 1 4.8244 -3.6430 -2.8295 11 1 2.6163 -3.9209 -3.7926 12 1 4.1332 -2.2590 -4.6970 13 6 3.2327 1.9469 -1.5188 14 6 4.5961 2.4315 -1.0979 15 8 5.4060 1.6484 -0.6485 16 7 4.9160 3.7349 -1.2218 17 6 6.2420 4.2215 -0.8159 18 6 6.0579 5.3582 0.1971 19 7 5.0866 6.3184 -0.3457 20 6 5.4062 7.6219 -0.4688 21 6 6.8026 8.0890 -0.1482 22 8 4.5698 8.4191 -0.8376 23 6 3.7587 5.8328 -0.7464 24 6 3.9449 4.6949 -1.7651 25 1 -1.0501 0.0002 0.0001 26 1 3.0098 -1.0152 0.1546 27 1 3.0090 0.6425 0.8026 28 1 1.6971 -2.9092 -1.4175 29 1 2.4684 2.4616 -0.9366 30 1 3.0841 2.1552 -2.5782 31 1 6.7784 4.5929 -1.6890 32 1 6.8048 3.4092 -0.3559 33 1 7.0122 5.8579 0.3638 34 1 5.6864 4.9554 1.1394 35 1 7.4412 7.9506 -1.0205 36 1 6.7796 9.1449 0.1215 37 1 7.1969 7.5093 0.6865 38 1 3.2259 5.4605 0.1287 39 1 3.1943 6.6457 -1.2030 40 1 4.3181 5.1000 -2.7058 41 1 2.9916 4.1945 -1.9349 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281240377.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:03 Heat of formation + Delta-G solvation = 35.861537 kcal Electronic energy + Delta-G solvation = -23874.451096 eV Core-core repulsion = 20371.998386 eV Total energy + Delta-G solvation = -3502.452710 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.47896 -39.12225 -36.94019 -35.62316 -34.04817 -31.99001 -31.55682 -31.24651 -30.05118 -27.87396 -26.75494 -25.92390 -23.89857 -22.87762 -21.70816 -19.96428 -18.40947 -17.50091 -17.35150 -16.53189 -16.26773 -16.14354 -15.72890 -15.58375 -15.14800 -14.83810 -14.05867 -13.92031 -13.65461 -13.61478 -13.32492 -13.06120 -12.77755 -12.52014 -12.43248 -12.27675 -11.74578 -11.58595 -11.42854 -11.34485 -11.30609 -10.92941 -10.74579 -10.25834 -10.05967 -10.03532 -9.41013 -9.27096 -8.95907 -8.85446 -8.36556 -8.27232 -6.99150 -5.78108 -3.28442 2.37713 2.65765 3.24536 3.26635 3.39024 3.44355 3.45354 4.13876 4.29331 4.37721 4.51757 4.63895 4.66915 4.80632 4.97523 4.99548 5.05105 5.18167 5.22491 5.28923 5.42106 5.50887 5.55254 5.58756 5.68153 5.78609 5.82007 5.87413 6.04368 6.17563 6.21251 6.67558 6.75270 7.13055 7.33665 7.46177 7.68784 7.73661 7.91373 8.27120 8.78264 9.09323 9.17380 9.71024 10.16183 11.24879 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.024947 B = 0.003774 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.090271 B = 7416.798237 C = 7985.788184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.307 4.307 2 C -0.090 4.090 3 C 0.269 3.731 4 N -0.563 5.563 5 C -0.256 4.256 6 H 0.071 0.929 7 C 0.005 3.995 8 N -0.898 5.898 9 Si 0.911 3.089 10 H -0.286 1.286 11 H -0.291 1.291 12 H -0.280 1.280 13 C 0.134 3.866 14 C 0.484 3.516 15 O -0.518 6.518 16 N -0.628 5.628 17 C 0.096 3.904 18 C 0.091 3.909 19 N -0.612 5.612 20 C 0.513 3.487 21 C -0.176 4.176 22 O -0.550 6.550 23 C 0.095 3.905 24 C 0.099 3.901 25 H 0.191 0.809 26 H 0.108 0.892 27 H 0.030 0.970 28 H 0.255 0.745 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.103 0.897 33 H 0.096 0.904 34 H 0.076 0.924 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.074 0.926 39 H 0.102 0.898 40 H 0.069 0.931 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.023 16.603 3.201 18.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.326 4.326 2 C -0.092 4.092 3 C 0.145 3.855 4 N -0.280 5.280 5 C -0.385 4.385 6 H 0.089 0.911 7 C -0.193 4.193 8 N -0.541 5.541 9 Si 0.741 3.259 10 H -0.213 1.213 11 H -0.217 1.217 12 H -0.205 1.205 13 C 0.001 3.999 14 C 0.270 3.730 15 O -0.391 6.391 16 N -0.366 5.366 17 C -0.028 4.028 18 C -0.032 4.032 19 N -0.347 5.347 20 C 0.302 3.698 21 C -0.235 4.235 22 O -0.428 6.428 23 C -0.028 4.028 24 C -0.025 4.025 25 H 0.208 0.792 26 H 0.126 0.874 27 H 0.048 0.952 28 H 0.066 0.934 29 H 0.088 0.912 30 H 0.098 0.902 31 H 0.082 0.918 32 H 0.121 0.879 33 H 0.114 0.886 34 H 0.094 0.906 35 H 0.112 0.888 36 H 0.110 0.890 37 H 0.102 0.898 38 H 0.092 0.908 39 H 0.120 0.880 40 H 0.087 0.913 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 6.954 16.326 3.248 18.040 hybrid contribution 0.118 -0.784 -0.700 1.058 sum 7.072 15.542 2.547 17.264 Atomic orbital electron populations 1.24186 0.95320 1.07672 1.05442 1.24297 0.95220 0.94238 0.95489 1.17806 0.82446 1.00221 0.85059 1.43575 1.73373 0.98436 1.12632 1.19161 1.21907 0.92509 1.04936 0.91121 1.25013 0.96786 0.98574 0.98928 1.69999 1.26995 1.18816 1.38336 0.86153 0.77959 0.81265 0.80489 1.21333 1.21715 1.20542 1.20721 0.90912 0.87618 1.00605 1.23357 0.92580 0.79971 0.77042 1.90632 1.51318 1.53503 1.43655 1.48473 1.14015 1.08316 1.65833 1.21822 0.86516 0.96813 0.97675 1.22279 0.93183 0.90395 0.97374 1.48133 1.15261 1.07656 1.63626 1.20826 0.90641 0.81464 0.76893 1.21968 0.93905 1.03747 1.03908 1.90711 1.51389 1.53177 1.47553 1.22147 0.84265 0.97484 0.98922 1.22124 0.94338 0.90092 0.95990 0.79219 0.87449 0.95187 0.93391 0.91248 0.90174 0.91780 0.87905 0.88592 0.90605 0.88785 0.88996 0.89761 0.90760 0.87996 0.91302 0.88075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.31 -6.87 19.25 29.55 0.57 -6.30 16 2 C -0.09 -2.17 11.59 -37.12 -0.43 -2.60 16 3 C 0.27 6.57 5.40 -6.83 -0.04 6.53 16 4 N -0.56 -13.79 1.98 -177.95 -0.35 -14.14 16 5 C -0.26 -6.93 9.68 -15.06 -0.15 -7.07 16 6 H 0.07 1.91 7.84 -52.49 -0.41 1.50 16 7 C 0.01 0.15 5.14 -17.43 -0.09 0.06 16 8 N -0.90 -25.35 9.03 55.49 0.50 -24.85 16 9 Si 0.91 21.85 29.56 -169.99 -5.03 16.82 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 13 C 0.13 2.57 4.49 -5.19 -0.02 2.55 16 14 C 0.48 8.86 7.77 -10.99 -0.09 8.77 16 15 O -0.52 -11.63 15.84 5.56 0.09 -11.54 16 16 N -0.63 -8.56 2.95 -172.19 -0.51 -9.06 16 17 C 0.10 1.07 6.59 -3.60 -0.02 1.05 16 18 C 0.09 0.78 6.44 -3.60 -0.02 0.76 16 19 N -0.61 -6.16 2.94 -172.19 -0.51 -6.66 16 20 C 0.51 5.47 7.80 -10.99 -0.09 5.39 16 21 C -0.18 -1.12 9.42 36.00 0.34 -0.78 16 22 O -0.55 -8.09 16.52 5.55 0.09 -8.00 16 23 C 0.10 0.99 6.61 -3.34 -0.02 0.97 16 24 C 0.10 1.08 6.53 -3.34 -0.02 1.06 16 25 H 0.19 3.53 7.80 -54.09 -0.42 3.11 16 26 H 0.11 2.92 6.31 -51.93 -0.33 2.59 16 27 H 0.03 0.67 8.12 -51.93 -0.42 0.25 16 28 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 29 H 0.07 1.20 7.65 -51.93 -0.40 0.80 16 30 H 0.08 1.47 7.81 -51.93 -0.41 1.06 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.10 1.30 6.99 -51.93 -0.36 0.94 16 33 H 0.10 0.53 5.47 -51.93 -0.28 0.24 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.08 0.37 6.26 -51.93 -0.33 0.04 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.10 1.09 7.01 -51.93 -0.36 0.73 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.10 1.05 5.91 -51.93 -0.31 0.74 16 LS Contribution 341.20 15.07 5.14 5.14 Total: -1.00 -34.79 341.20 -6.35 -41.14 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -5.70 Total: 0.78 kcal Atomic # 6 Polarization: 10.45 SS G_CDS: -0.08 Total: 10.37 kcal Atomic # 7 Polarization: -53.85 SS G_CDS: -0.87 Total: -54.72 kcal Atomic # 8 Polarization: -19.72 SS G_CDS: 0.18 Total: -19.54 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.03 Total: 16.82 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -34.79 -6.35 -41.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281240377.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.003 kcal (2) G-P(sol) polarization free energy of solvation -34.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds