Wall clock time and date at job start Tue Mar 31 2020 03:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47478 * 111.35127 * 3 2 1 5 5 C 1.36932 * 120.00063 * 263.04002 * 4 3 2 6 6 H 1.08000 * 119.99847 * 202.30018 * 5 4 3 7 7 C 1.38813 * 120.00315 * 22.30446 * 5 4 3 8 8 N 1.31625 * 119.99867 * 8.78544 * 7 5 4 9 9 Si 1.86797 * 120.00283 * 188.78605 * 7 5 4 10 10 H 1.48506 * 109.46840 * 89.99862 * 9 7 5 11 11 H 1.48494 * 109.47214 * 209.99705 * 9 7 5 12 12 H 1.48503 * 109.47070 * 329.99847 * 9 7 5 13 13 C 1.46507 * 119.99901 * 83.03645 * 4 3 2 14 14 C 1.50693 * 109.46886 * 90.00125 * 13 4 3 15 15 O 1.21280 * 120.00116 * 0.02562 * 14 13 4 16 16 N 1.34780 * 120.00031 * 179.97438 * 14 13 4 17 17 C 1.46967 * 120.59359 * 180.02562 * 16 14 13 18 18 C 1.53371 * 108.63316 * 235.24970 * 17 16 14 19 19 N 1.46963 * 108.63723 * 310.57986 * 18 17 16 20 20 C 1.34781 * 120.59150 * 235.20696 * 19 18 17 21 21 C 1.50692 * 120.00283 * 4.69289 * 20 19 18 22 22 O 1.21287 * 119.99589 * 184.69253 * 20 19 18 23 23 C 1.46961 * 118.81617 * 55.47502 * 19 18 17 24 24 C 1.46963 * 120.59165 * 0.02825 * 16 14 13 25 25 H 4.40644 * 5.51480 * 180.02562 * 4 1 2 26 26 H 1.09006 * 109.46918 * 351.34911 * 3 2 1 27 27 H 1.08995 * 109.47050 * 231.35646 * 3 2 1 28 28 H 0.96992 * 119.99681 * 179.97438 * 8 7 5 29 29 H 1.08998 * 109.46727 * 330.00240 * 13 4 3 30 30 H 1.08992 * 109.47059 * 210.00604 * 13 4 3 31 31 H 1.08996 * 109.60788 * 115.50700 * 17 16 14 32 32 H 1.09003 * 109.61296 * 354.99289 * 17 16 14 33 33 H 1.09005 * 109.60896 * 190.83211 * 18 17 16 34 34 H 1.09001 * 109.75175 * 70.40384 * 18 17 16 35 35 H 1.09000 * 109.47219 * 84.55355 * 21 20 19 36 36 H 1.09001 * 109.47399 * 204.55661 * 21 20 19 37 37 H 1.09004 * 109.47040 * 324.55603 * 21 20 19 38 38 H 1.09005 * 109.60903 * 64.26559 * 23 19 18 39 39 H 1.08993 * 109.61480 * 184.78279 * 23 19 18 40 40 H 1.09003 * 109.60799 * 244.49325 * 24 16 14 41 41 H 1.09003 * 109.60956 * 4.83317 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1342 0.5037 -1.2863 5 6 3.4983 -0.3749 -2.2715 6 1 4.1742 -0.0602 -3.0529 7 6 2.9987 -1.6700 -2.2660 8 7 2.0464 -2.0044 -1.4211 9 14 3.6780 -2.9382 -3.4574 10 1 4.8244 -3.6430 -2.8295 11 1 2.6163 -3.9209 -3.7926 12 1 4.1332 -2.2590 -4.6970 13 6 3.2327 1.9469 -1.5188 14 6 4.5961 2.4315 -1.0979 15 8 5.4060 1.6484 -0.6485 16 7 4.9160 3.7349 -1.2218 17 6 6.2420 4.2215 -0.8159 18 6 6.0579 5.3582 0.1971 19 7 5.0866 6.3184 -0.3457 20 6 5.4062 7.6219 -0.4688 21 6 6.8026 8.0890 -0.1482 22 8 4.5698 8.4191 -0.8376 23 6 3.7587 5.8328 -0.7464 24 6 3.9449 4.6949 -1.7651 25 1 -1.0501 0.0002 0.0001 26 1 3.0098 -1.0152 0.1546 27 1 3.0090 0.6425 0.8026 28 1 1.6971 -2.9092 -1.4175 29 1 2.4684 2.4616 -0.9366 30 1 3.0841 2.1552 -2.5782 31 1 6.7784 4.5929 -1.6890 32 1 6.8048 3.4092 -0.3559 33 1 7.0122 5.8579 0.3638 34 1 5.6864 4.9554 1.1394 35 1 7.4412 7.9506 -1.0205 36 1 6.7796 9.1449 0.1215 37 1 7.1969 7.5093 0.6865 38 1 3.2259 5.4605 0.1287 39 1 3.1943 6.6457 -1.2030 40 1 4.3181 5.1000 -2.7058 41 1 2.9916 4.1945 -1.9349 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281240377.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:02 Heat of formation + Delta-G solvation = 13.122489 kcal Electronic energy + Delta-G solvation = -23875.437135 eV Core-core repulsion = 20371.998386 eV Total energy + Delta-G solvation = -3503.438749 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -41.46085 -40.34100 -38.15854 -37.34157 -35.13420 -33.50722 -33.21748 -32.62823 -30.89300 -29.15268 -28.09119 -27.73561 -24.92847 -24.12111 -23.14044 -21.03575 -19.50255 -19.33989 -18.45287 -18.15946 -17.42814 -17.25531 -16.85999 -16.59836 -16.47312 -16.35083 -15.49589 -15.20138 -15.03168 -14.78516 -14.66453 -14.20350 -14.14398 -13.69182 -13.35062 -13.19192 -13.06278 -12.97711 -12.79696 -12.60433 -12.52569 -12.35310 -12.31741 -12.25670 -11.96499 -11.10572 -10.90822 -10.76852 -10.67717 -10.28372 -10.23486 -9.32542 -8.89989 -7.82644 -5.33580 1.46026 1.48827 1.55832 1.57169 1.77911 1.82807 2.18746 2.38138 2.52365 2.60003 3.31279 3.56334 3.74261 3.80306 3.86044 3.95989 4.11718 4.15029 4.25440 4.33842 4.42319 4.50515 4.53966 4.62730 4.65236 4.72372 4.76771 4.82230 4.94768 4.98129 5.12219 5.36701 5.38677 5.59468 5.61916 5.68975 6.25540 6.34320 6.46376 7.08303 7.11496 7.35440 7.37524 7.77596 8.18736 9.17938 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.024947 B = 0.003774 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.090271 B = 7416.798237 C = 7985.788184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.288 4.288 2 C -0.131 4.131 3 C 0.278 3.722 4 N -0.581 5.581 5 C -0.262 4.262 6 H 0.065 0.935 7 C -0.043 4.043 8 N -0.918 5.918 9 Si 0.968 3.032 10 H -0.291 1.291 11 H -0.293 1.293 12 H -0.271 1.271 13 C 0.132 3.868 14 C 0.489 3.511 15 O -0.567 6.567 16 N -0.619 5.619 17 C 0.092 3.908 18 C 0.100 3.900 19 N -0.613 5.613 20 C 0.507 3.493 21 C -0.170 4.170 22 O -0.597 6.597 23 C 0.097 3.903 24 C 0.099 3.901 25 H 0.226 0.774 26 H 0.072 0.928 27 H 0.042 0.958 28 H 0.248 0.752 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.135 0.865 34 H 0.072 0.928 35 H 0.112 0.888 36 H 0.093 0.907 37 H 0.109 0.891 38 H 0.074 0.926 39 H 0.099 0.901 40 H 0.080 0.920 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.697 18.318 3.002 20.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.306 4.306 2 C -0.134 4.134 3 C 0.152 3.848 4 N -0.300 5.300 5 C -0.391 4.391 6 H 0.083 0.917 7 C -0.239 4.239 8 N -0.563 5.563 9 Si 0.797 3.203 10 H -0.218 1.218 11 H -0.219 1.219 12 H -0.196 1.196 13 C 0.002 3.998 14 C 0.276 3.724 15 O -0.445 6.445 16 N -0.355 5.355 17 C -0.031 4.031 18 C -0.023 4.023 19 N -0.347 5.347 20 C 0.299 3.701 21 C -0.229 4.229 22 O -0.479 6.479 23 C -0.026 4.026 24 C -0.024 4.024 25 H 0.243 0.757 26 H 0.090 0.910 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.108 0.892 30 H 0.107 0.893 31 H 0.099 0.901 32 H 0.106 0.894 33 H 0.153 0.847 34 H 0.091 0.909 35 H 0.131 0.869 36 H 0.112 0.888 37 H 0.127 0.873 38 H 0.093 0.907 39 H 0.117 0.883 40 H 0.099 0.901 41 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 7.651 18.118 3.044 19.901 hybrid contribution -0.088 -1.184 -0.626 1.343 sum 7.563 16.933 2.418 18.702 Atomic orbital electron populations 1.25012 0.96238 1.05686 1.03699 1.24453 0.95755 0.96014 0.97153 1.17517 0.83070 0.98516 0.85650 1.43677 1.73916 1.00248 1.12121 1.19337 1.21335 0.93386 1.05068 0.91718 1.25660 0.97456 1.00145 1.00657 1.70172 1.28076 1.18424 1.39596 0.85266 0.76957 0.79073 0.79040 1.21768 1.21948 1.19632 1.20890 0.92185 0.85173 1.01589 1.22803 0.91606 0.81230 0.76767 1.90618 1.52382 1.55256 1.46232 1.48345 1.15523 1.07192 1.64424 1.22025 0.84861 0.97177 0.99043 1.22328 0.94659 0.89380 0.95960 1.48249 1.15180 1.07978 1.63253 1.21625 0.91857 0.80973 0.75672 1.22010 0.91113 1.04153 1.05581 1.90694 1.53147 1.54286 1.49730 1.22059 0.84914 0.96958 0.98702 1.22277 0.94025 0.89610 0.96505 0.75735 0.91021 0.94004 0.94226 0.89227 0.89262 0.90067 0.89445 0.84695 0.90923 0.86950 0.88820 0.87260 0.90746 0.88305 0.90129 0.87549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -12.47 19.25 74.32 1.43 -11.04 16 2 C -0.13 -6.33 11.59 31.13 0.36 -5.97 16 3 C 0.28 13.83 5.40 84.58 0.46 14.29 16 4 N -0.58 -28.81 1.98 -716.92 -1.42 -30.23 16 5 C -0.26 -14.34 9.68 84.03 0.81 -13.52 16 6 H 0.07 3.53 7.84 -2.91 -0.02 3.51 16 7 C -0.04 -2.41 5.14 84.86 0.44 -1.97 16 8 N -0.92 -52.78 9.03 21.65 0.20 -52.59 16 9 Si 0.97 45.51 29.56 68.60 2.03 47.54 16 10 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 11 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 12 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 13 C 0.13 5.03 4.49 85.63 0.38 5.41 16 14 C 0.49 17.70 7.77 87.65 0.68 18.39 16 15 O -0.57 -25.81 15.84 -3.03 -0.05 -25.86 16 16 N -0.62 -15.95 2.95 -817.06 -2.41 -18.36 16 17 C 0.09 1.86 6.59 86.41 0.57 2.43 16 18 C 0.10 1.40 6.44 86.42 0.56 1.96 16 19 N -0.61 -10.81 2.94 -817.07 -2.40 -13.22 16 20 C 0.51 9.64 7.80 87.65 0.68 10.32 16 21 C -0.17 -1.54 9.42 71.23 0.67 -0.87 16 22 O -0.60 -16.90 16.52 -3.05 -0.05 -16.95 16 23 C 0.10 1.86 6.61 86.58 0.57 2.44 16 24 C 0.10 1.98 6.53 86.58 0.56 2.54 16 25 H 0.23 7.71 7.80 -4.41 -0.03 7.68 16 26 H 0.07 4.06 6.31 -2.38 -0.02 4.05 16 27 H 0.04 1.92 8.12 -2.39 -0.02 1.90 16 28 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16 29 H 0.09 3.01 7.65 -2.39 -0.02 2.99 16 30 H 0.09 3.19 7.81 -2.39 -0.02 3.17 16 31 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.09 2.12 6.99 -2.39 -0.02 2.10 16 33 H 0.14 0.87 5.47 -2.38 -0.01 0.86 16 34 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.11 0.44 6.26 -2.39 -0.01 0.42 16 38 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 39 H 0.10 2.01 7.01 -2.39 -0.02 2.00 16 40 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.11 2.02 5.91 -2.39 -0.01 2.00 16 Total: -1.00 -77.09 341.20 5.11 -71.98 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: 1.03 Total: 13.28 kcal Atomic # 6 Polarization: 16.22 SS G_CDS: 8.18 Total: 24.40 kcal Atomic # 7 Polarization: -108.36 SS G_CDS: -6.04 Total: -114.39 kcal Atomic # 8 Polarization: -42.71 SS G_CDS: -0.10 Total: -42.81 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -77.09 5.11 -71.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281240377.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.105 kcal (2) G-P(sol) polarization free energy of solvation -77.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds