Wall clock time and date at job start Tue Mar 31 2020 03:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34949 * 126.03962 * 2 1 4 4 C 1.35309 * 107.74878 * 180.02562 * 3 2 1 5 5 C 1.50703 * 126.04109 * 180.02562 * 4 3 2 6 6 H 1.08992 * 109.47206 * 19.45898 * 5 4 3 7 7 O 1.42899 * 109.47191 * 139.46280 * 5 4 3 8 8 C 1.50700 * 109.46829 * 259.45831 * 5 4 3 9 9 O 1.21293 * 120.00432 * 249.05460 * 8 5 4 10 10 N 1.34775 * 120.00218 * 69.05756 * 8 5 4 11 11 C 1.37103 * 119.99645 * 5.56015 * 10 8 5 12 12 H 1.08005 * 119.99523 * 236.32215 * 11 10 8 13 13 C 1.38950 * 120.00178 * 56.32496 * 11 10 8 14 14 N 1.31410 * 119.99703 * 12.58389 * 13 11 10 15 15 Si 1.86795 * 119.99910 * 192.58151 * 13 11 10 16 16 H 1.48503 * 109.47215 * 90.00083 * 15 13 11 17 17 H 1.48504 * 109.46858 * 209.99853 * 15 13 11 18 18 H 1.48502 * 109.47449 * 329.99995 * 15 13 11 19 19 C 1.46501 * 120.00346 * 185.56224 * 10 8 5 20 20 C 1.55243 * 110.46679 * 230.29229 * 19 10 8 21 21 C 1.54886 * 102.58581 * 203.39327 * 20 19 10 22 22 C 1.54264 * 104.31537 * 37.92902 * 21 20 19 23 23 C 1.53877 * 106.59875 * 336.32545 * 22 21 20 24 24 C 1.39870 * 107.92086 * 0.26381 * 4 3 2 25 25 N 1.30835 * 108.20047 * 359.55473 * 24 4 3 26 26 H 1.08997 * 109.47254 * 89.99592 * 1 2 3 27 27 H 1.08997 * 109.46870 * 209.99786 * 1 2 3 28 28 H 1.09002 * 109.46857 * 329.99696 * 1 2 3 29 29 H 1.08001 * 126.12413 * 0.02562 * 3 2 1 30 30 H 0.96698 * 114.00140 * 59.99710 * 7 5 4 31 31 H 0.97004 * 119.99920 * 179.97438 * 14 13 11 32 32 H 1.08997 * 110.43533 * 352.94016 * 19 10 8 33 33 H 1.08995 * 110.89490 * 85.10109 * 20 19 10 34 34 H 1.08999 * 110.76618 * 321.62093 * 20 19 10 35 35 H 1.09004 * 110.48673 * 279.18868 * 21 20 19 36 36 H 1.08995 * 110.49035 * 156.67688 * 21 20 19 37 37 H 1.09001 * 110.03172 * 95.60717 * 22 21 20 38 38 H 1.08998 * 110.03853 * 216.98819 * 22 21 20 39 39 H 1.09001 * 110.02738 * 119.28005 * 23 22 21 40 40 H 1.09002 * 110.03126 * 240.66197 * 23 22 21 41 41 H 1.07999 * 125.90351 * 179.73782 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5437 0.6666 -0.0006 5 6 4.7680 1.5453 -0.0002 6 1 4.4983 2.5440 0.3428 7 8 5.7522 0.9906 0.8748 8 6 5.3273 1.6279 -1.3972 9 8 6.3891 1.1025 -1.6575 10 7 4.6478 2.2857 -2.3573 11 6 3.5066 2.9757 -2.0391 12 1 2.5803 2.7509 -2.5471 13 6 3.5416 3.9642 -1.0632 14 7 4.6959 4.4114 -0.6222 15 14 1.9480 4.6573 -0.3782 16 1 1.5261 3.8574 0.7996 17 1 2.1581 6.0691 0.0318 18 1 0.8929 4.5966 -1.4214 19 6 5.1285 2.2635 -3.7411 20 6 5.1991 3.7044 -4.3144 21 6 5.1116 3.4645 -5.8421 22 6 4.1045 2.3053 -5.9890 23 6 4.1152 1.5417 -4.6531 24 6 3.5347 -0.7321 -0.0071 25 7 2.2892 -1.1328 -0.0006 26 1 -0.3633 0.0001 -1.0276 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5139 29 1 1.9282 2.1193 0.0004 30 1 6.0398 0.1006 0.6295 31 1 4.7205 5.1017 0.0588 32 1 6.1039 1.7805 -3.7974 33 1 6.1433 4.1815 -4.0517 34 1 4.3546 4.3001 -3.9680 35 1 6.0850 3.1768 -6.2394 36 1 4.7428 4.3567 -6.3479 37 1 3.1075 2.6995 -6.1857 38 1 4.4111 1.6447 -6.8000 39 1 3.1234 1.5654 -4.2016 40 1 4.4267 0.5098 -4.8154 41 1 4.4053 -1.3710 -0.0131 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282979168.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:05:55 Heat of formation + Delta-G solvation = -3.364645 kcal Electronic energy + Delta-G solvation = -25375.161225 eV Core-core repulsion = 21871.007540 eV Total energy + Delta-G solvation = -3504.153685 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.76667 -38.92176 -37.02626 -35.17069 -34.31654 -32.73182 -31.51026 -30.17694 -27.98784 -27.56137 -26.68340 -25.25569 -24.29765 -20.61622 -20.55289 -19.83858 -19.56518 -19.36381 -17.12901 -16.92140 -15.98370 -15.44529 -15.01231 -14.81416 -14.66846 -14.46925 -13.95951 -13.89212 -13.22732 -13.00088 -12.69488 -12.66111 -12.56887 -12.32505 -12.16849 -11.67095 -11.49783 -11.29430 -11.06414 -10.71435 -10.64770 -10.60705 -10.46532 -10.38755 -10.28099 -9.95416 -9.81084 -9.62536 -8.96181 -8.87688 -8.49197 -7.57774 -7.25687 -6.49908 -4.34150 2.39508 2.87621 2.92622 3.01374 3.07451 3.31554 3.87542 4.10425 4.70858 4.77930 4.88876 5.30603 5.32409 5.35056 5.38807 5.48777 5.50552 5.53251 5.58844 6.00085 6.06823 6.16845 6.17776 6.21928 6.28455 6.28978 6.45245 6.49974 6.50916 6.62614 6.68506 6.92601 6.97560 7.06227 7.18265 7.25176 7.34883 7.47403 7.95872 8.15027 8.43675 8.58133 8.82406 9.54432 9.98331 10.55063 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.012886 B = 0.007638 C = 0.007086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2172.448690 B = 3664.902576 C = 3950.422504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.386 5.386 3 C 0.087 3.913 4 C -0.236 4.236 5 C 0.172 3.828 6 H 0.146 0.854 7 O -0.546 6.546 8 C 0.503 3.497 9 O -0.605 6.605 10 N -0.442 5.442 11 C -0.323 4.323 12 H 0.079 0.921 13 C 0.042 3.958 14 N -0.851 5.851 15 Si 0.886 3.114 16 H -0.269 1.269 17 H -0.277 1.277 18 H -0.263 1.263 19 C 0.134 3.866 20 C -0.115 4.115 21 C -0.125 4.125 22 C -0.116 4.116 23 C -0.129 4.129 24 C 0.055 3.945 25 N -0.309 5.309 26 H 0.071 0.929 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.171 0.829 30 H 0.365 0.635 31 H 0.275 0.725 32 H 0.079 0.921 33 H 0.056 0.944 34 H 0.084 0.916 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.057 0.943 38 H 0.052 0.948 39 H 0.069 0.931 40 H 0.050 0.950 41 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.389 -2.783 -2.089 8.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.169 5.169 3 C -0.058 4.058 4 C -0.248 4.248 5 C 0.109 3.891 6 H 0.163 0.837 7 O -0.349 6.349 8 C 0.292 3.708 9 O -0.491 6.491 10 N -0.162 5.162 11 C -0.452 4.452 12 H 0.096 0.904 13 C -0.164 4.164 14 N -0.486 5.486 15 Si 0.712 3.288 16 H -0.195 1.195 17 H -0.202 1.202 18 H -0.187 1.187 19 C 0.030 3.970 20 C -0.153 4.153 21 C -0.163 4.163 22 C -0.154 4.154 23 C -0.167 4.167 24 C -0.131 4.131 25 N -0.131 5.131 26 H 0.089 0.911 27 H 0.103 0.897 28 H 0.100 0.900 29 H 0.188 0.812 30 H 0.211 0.789 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.075 0.925 34 H 0.103 0.897 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.088 0.912 40 H 0.069 0.931 41 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -7.814 -3.314 -1.789 8.674 hybrid contribution -0.328 0.881 -0.063 0.942 sum -8.142 -2.433 -1.852 8.697 Atomic orbital electron populations 1.21741 0.75077 1.03815 1.03023 1.48371 1.06136 1.04039 1.58364 1.22481 0.90681 0.92934 0.99721 1.20455 0.95250 0.93692 1.15421 1.20296 0.82633 0.97570 0.88598 0.83682 1.86566 1.60030 1.35498 1.52829 1.20972 0.84547 0.77613 0.87632 1.90492 1.23954 1.51805 1.82805 1.43152 1.24018 1.44582 1.04490 1.19055 0.87796 1.16015 1.22339 0.90390 1.25660 0.97018 0.95172 0.98547 1.69915 1.24062 1.26695 1.27953 0.86653 0.83033 0.79399 0.79716 1.19544 1.20194 1.18695 1.21839 0.96517 0.94968 0.83724 1.22663 1.02442 0.97688 0.92489 1.22318 0.98560 0.97650 0.97737 1.22027 0.99088 0.97115 0.97209 1.22398 1.01127 0.98148 0.95069 1.23583 0.95045 0.94684 0.99813 1.77189 1.01484 1.08379 1.26032 0.91083 0.89737 0.89968 0.81187 0.78877 0.91458 0.90254 0.92543 0.89745 0.92499 0.92492 0.92455 0.92904 0.91247 0.93104 0.80651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.25 11.47 59.85 0.69 1.94 16 2 N -0.39 -6.70 4.01 -68.17 -0.27 -6.98 16 3 C 0.09 1.69 10.00 -17.22 -0.17 1.51 16 4 C -0.24 -4.92 4.68 -105.05 -0.49 -5.41 16 5 C 0.17 4.00 3.01 -29.03 -0.09 3.92 16 6 H 0.15 3.64 4.69 -51.93 -0.24 3.39 16 7 O -0.55 -12.28 12.95 -54.98 -0.71 -13.00 16 8 C 0.50 12.76 6.33 -10.99 -0.07 12.69 16 9 O -0.61 -16.63 15.69 -14.20 -0.22 -16.85 16 10 N -0.44 -10.57 2.42 -105.77 -0.26 -10.82 16 11 C -0.32 -7.45 4.88 -14.93 -0.07 -7.52 16 12 H 0.08 1.78 7.10 -52.48 -0.37 1.41 16 13 C 0.04 0.98 3.44 -17.47 -0.06 0.92 16 14 N -0.85 -21.39 11.54 55.50 0.64 -20.75 16 15 Si 0.89 17.28 27.03 -169.99 -4.60 12.68 16 16 H -0.27 -4.96 6.49 56.52 0.37 -4.59 16 17 H -0.28 -5.56 7.11 56.52 0.40 -5.15 16 18 H -0.26 -4.95 7.11 56.52 0.40 -4.55 16 19 C 0.13 2.91 3.26 -66.08 -0.22 2.70 16 20 C -0.11 -2.29 6.39 -24.55 -0.16 -2.45 16 21 C -0.12 -1.99 6.82 -25.07 -0.17 -2.16 16 22 C -0.12 -1.82 6.80 -25.61 -0.17 -1.99 16 23 C -0.13 -2.41 6.43 -25.61 -0.16 -2.57 16 24 C 0.05 1.05 11.45 -17.37 -0.20 0.85 16 25 N -0.31 -5.80 12.58 30.62 0.39 -5.42 16 26 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.17 3.25 3.61 -52.49 -0.19 3.06 16 30 H 0.36 7.05 8.08 45.56 0.37 7.42 16 31 H 0.27 6.59 8.31 -40.82 -0.34 6.26 16 32 H 0.08 1.87 7.00 -51.93 -0.36 1.50 16 33 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.08 1.82 7.01 -51.93 -0.36 1.45 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.07 1.37 6.83 -51.93 -0.35 1.01 16 40 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.18 2.89 7.78 -52.49 -0.41 2.48 16 LS Contribution 325.58 15.07 4.91 4.91 Total: -1.00 -29.76 325.58 -6.38 -36.14 By element: Atomic # 1 Polarization: 22.57 SS G_CDS: -4.90 Total: 17.67 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: -1.35 Total: 2.41 kcal Atomic # 7 Polarization: -44.46 SS G_CDS: 0.50 Total: -43.96 kcal Atomic # 8 Polarization: -28.91 SS G_CDS: -0.93 Total: -29.85 kcal Atomic # 14 Polarization: 17.28 SS G_CDS: -4.60 Total: 12.68 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.76 -6.38 -36.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282979168.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.773 kcal (2) G-P(sol) polarization free energy of solvation -29.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds