Wall clock time and date at job start Tue Mar 31 2020 03:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34949 * 126.03962 * 2 1 4 4 C 1.35309 * 107.74878 * 180.02562 * 3 2 1 5 5 C 1.50703 * 126.04109 * 180.02562 * 4 3 2 6 6 H 1.08992 * 109.47206 * 19.45898 * 5 4 3 7 7 O 1.42899 * 109.47191 * 139.46280 * 5 4 3 8 8 C 1.50700 * 109.46829 * 259.45831 * 5 4 3 9 9 O 1.21293 * 120.00432 * 249.05460 * 8 5 4 10 10 N 1.34775 * 120.00218 * 69.05756 * 8 5 4 11 11 C 1.37103 * 119.99645 * 5.56015 * 10 8 5 12 12 H 1.08005 * 119.99523 * 236.32215 * 11 10 8 13 13 C 1.38950 * 120.00178 * 56.32496 * 11 10 8 14 14 N 1.31410 * 119.99703 * 12.58389 * 13 11 10 15 15 Si 1.86795 * 119.99910 * 192.58151 * 13 11 10 16 16 H 1.48503 * 109.47215 * 90.00083 * 15 13 11 17 17 H 1.48504 * 109.46858 * 209.99853 * 15 13 11 18 18 H 1.48502 * 109.47449 * 329.99995 * 15 13 11 19 19 C 1.46501 * 120.00346 * 185.56224 * 10 8 5 20 20 C 1.55243 * 110.46679 * 230.29229 * 19 10 8 21 21 C 1.54886 * 102.58581 * 203.39327 * 20 19 10 22 22 C 1.54264 * 104.31537 * 37.92902 * 21 20 19 23 23 C 1.53877 * 106.59875 * 336.32545 * 22 21 20 24 24 C 1.39870 * 107.92086 * 0.26381 * 4 3 2 25 25 N 1.30835 * 108.20047 * 359.55473 * 24 4 3 26 26 H 1.08997 * 109.47254 * 89.99592 * 1 2 3 27 27 H 1.08997 * 109.46870 * 209.99786 * 1 2 3 28 28 H 1.09002 * 109.46857 * 329.99696 * 1 2 3 29 29 H 1.08001 * 126.12413 * 0.02562 * 3 2 1 30 30 H 0.96698 * 114.00140 * 59.99710 * 7 5 4 31 31 H 0.97004 * 119.99920 * 179.97438 * 14 13 11 32 32 H 1.08997 * 110.43533 * 352.94016 * 19 10 8 33 33 H 1.08995 * 110.89490 * 85.10109 * 20 19 10 34 34 H 1.08999 * 110.76618 * 321.62093 * 20 19 10 35 35 H 1.09004 * 110.48673 * 279.18868 * 21 20 19 36 36 H 1.08995 * 110.49035 * 156.67688 * 21 20 19 37 37 H 1.09001 * 110.03172 * 95.60717 * 22 21 20 38 38 H 1.08998 * 110.03853 * 216.98819 * 22 21 20 39 39 H 1.09001 * 110.02738 * 119.28005 * 23 22 21 40 40 H 1.09002 * 110.03126 * 240.66197 * 23 22 21 41 41 H 1.07999 * 125.90351 * 179.73782 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5437 0.6666 -0.0006 5 6 4.7680 1.5453 -0.0002 6 1 4.4983 2.5440 0.3428 7 8 5.7522 0.9906 0.8748 8 6 5.3273 1.6279 -1.3972 9 8 6.3891 1.1025 -1.6575 10 7 4.6478 2.2857 -2.3573 11 6 3.5066 2.9757 -2.0391 12 1 2.5803 2.7509 -2.5471 13 6 3.5416 3.9642 -1.0632 14 7 4.6959 4.4114 -0.6222 15 14 1.9480 4.6573 -0.3782 16 1 1.5261 3.8574 0.7996 17 1 2.1581 6.0691 0.0318 18 1 0.8929 4.5966 -1.4214 19 6 5.1285 2.2635 -3.7411 20 6 5.1991 3.7044 -4.3144 21 6 5.1116 3.4645 -5.8421 22 6 4.1045 2.3053 -5.9890 23 6 4.1152 1.5417 -4.6531 24 6 3.5347 -0.7321 -0.0071 25 7 2.2892 -1.1328 -0.0006 26 1 -0.3633 0.0001 -1.0276 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5139 29 1 1.9282 2.1193 0.0004 30 1 6.0398 0.1006 0.6295 31 1 4.7205 5.1017 0.0588 32 1 6.1039 1.7805 -3.7974 33 1 6.1433 4.1815 -4.0517 34 1 4.3546 4.3001 -3.9680 35 1 6.0850 3.1768 -6.2394 36 1 4.7428 4.3567 -6.3479 37 1 3.1075 2.6995 -6.1857 38 1 4.4111 1.6447 -6.8000 39 1 3.1234 1.5654 -4.2016 40 1 4.4267 0.5098 -4.8154 41 1 4.4053 -1.3710 -0.0131 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282979168.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:05:54 Heat of formation + Delta-G solvation = -23.313586 kcal Electronic energy + Delta-G solvation = -25376.026276 eV Core-core repulsion = 21871.007540 eV Total energy + Delta-G solvation = -3505.018735 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.25056 -40.69922 -38.67353 -36.94725 -36.12257 -34.02465 -33.31479 -31.74118 -29.48401 -29.07304 -28.12383 -26.93223 -25.93959 -22.21674 -22.01145 -21.37759 -21.10890 -21.04152 -18.92975 -18.43334 -17.72159 -17.24285 -16.43160 -16.26649 -16.20726 -16.02189 -15.63092 -15.30561 -14.93763 -14.63565 -14.31757 -14.16545 -13.87592 -13.61738 -13.44853 -13.30836 -13.20134 -12.98300 -12.68729 -12.35768 -12.15603 -12.05971 -12.00489 -11.95683 -11.86555 -11.50838 -11.37185 -11.19422 -10.69717 -10.34071 -10.24421 -9.20633 -9.09987 -8.29578 -6.20440 0.94139 1.34459 1.42283 1.52204 1.69806 1.76416 2.15671 2.29551 2.97802 3.02112 3.65010 3.79077 3.87835 3.90518 4.01158 4.13365 4.31792 4.41399 4.46010 4.50281 4.62657 4.66991 4.68832 4.71017 4.77717 4.79836 4.90733 4.98707 5.04532 5.15202 5.22777 5.33257 5.41736 5.48849 5.52319 5.60875 5.64535 6.12541 6.13600 6.68806 6.71321 6.78168 7.02070 7.64934 8.11793 8.76486 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.012886 B = 0.007638 C = 0.007086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2172.448690 B = 3664.902576 C = 3950.422504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.378 5.378 3 C 0.087 3.913 4 C -0.259 4.259 5 C 0.180 3.820 6 H 0.128 0.872 7 O -0.558 6.558 8 C 0.484 3.516 9 O -0.642 6.642 10 N -0.443 5.443 11 C -0.324 4.324 12 H 0.084 0.916 13 C 0.011 3.989 14 N -0.890 5.890 15 Si 0.939 3.061 16 H -0.250 1.250 17 H -0.286 1.286 18 H -0.245 1.245 19 C 0.119 3.881 20 C -0.110 4.110 21 C -0.114 4.114 22 C -0.108 4.108 23 C -0.120 4.120 24 C 0.047 3.953 25 N -0.314 5.314 26 H 0.087 0.913 27 H 0.103 0.897 28 H 0.107 0.893 29 H 0.175 0.825 30 H 0.377 0.623 31 H 0.273 0.727 32 H 0.052 0.948 33 H 0.034 0.966 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.059 0.941 40 H 0.051 0.949 41 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.225 -2.911 -3.086 11.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.161 5.161 3 C -0.060 4.060 4 C -0.272 4.272 5 C 0.117 3.883 6 H 0.145 0.855 7 O -0.362 6.362 8 C 0.275 3.725 9 O -0.531 6.531 10 N -0.162 5.162 11 C -0.452 4.452 12 H 0.101 0.899 13 C -0.192 4.192 14 N -0.527 5.527 15 Si 0.761 3.239 16 H -0.175 1.175 17 H -0.212 1.212 18 H -0.168 1.168 19 C 0.015 3.985 20 C -0.148 4.148 21 C -0.152 4.152 22 C -0.146 4.146 23 C -0.159 4.159 24 C -0.138 4.138 25 N -0.137 5.137 26 H 0.106 0.894 27 H 0.121 0.879 28 H 0.125 0.875 29 H 0.192 0.808 30 H 0.225 0.775 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.053 0.947 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.099 0.901 37 H 0.091 0.909 38 H 0.096 0.904 39 H 0.078 0.922 40 H 0.069 0.931 41 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -10.702 -3.465 -2.813 11.595 hybrid contribution 0.555 0.923 0.243 1.104 sum -10.147 -2.542 -2.571 10.772 Atomic orbital electron populations 1.22250 0.71802 1.06069 1.04830 1.48783 1.07889 1.02893 1.56498 1.22481 0.90595 0.93586 0.99353 1.20312 0.94902 0.94232 1.17711 1.20032 0.83710 0.97463 0.87112 0.85505 1.86502 1.60353 1.36500 1.52874 1.21504 0.84484 0.77649 0.88900 1.90442 1.25457 1.53538 1.83649 1.43361 1.24008 1.43701 1.05113 1.19206 0.87586 1.15851 1.22599 0.89853 1.26324 0.99743 0.95015 0.98107 1.70048 1.26652 1.27402 1.28592 0.85821 0.79718 0.78199 0.80126 1.17468 1.21217 1.16761 1.22064 0.96351 0.96466 0.83662 1.22554 1.00502 0.95952 0.95781 1.22283 0.99627 0.98971 0.94323 1.22006 0.99895 0.96832 0.95832 1.22300 0.99179 0.98328 0.96051 1.23810 0.95881 0.94241 0.99888 1.77148 1.01417 1.09102 1.25994 0.89438 0.87888 0.87485 0.80844 0.77531 0.91700 0.92933 0.94695 0.91371 0.91430 0.90148 0.90904 0.90365 0.92249 0.93053 0.79197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.81 11.47 127.77 1.47 3.27 16 2 N -0.38 -12.21 4.01 -369.58 -1.48 -13.70 16 3 C 0.09 3.24 10.00 83.54 0.84 4.07 16 4 C -0.26 -10.77 4.68 -20.14 -0.09 -10.86 16 5 C 0.18 8.59 3.01 29.10 0.09 8.68 16 6 H 0.13 6.54 4.69 -2.39 -0.01 6.53 16 7 O -0.56 -25.89 12.95 -130.10 -1.69 -27.58 16 8 C 0.48 25.49 6.33 87.66 0.55 26.04 16 9 O -0.64 -36.99 15.69 15.81 0.25 -36.74 16 10 N -0.44 -21.71 2.42 -606.94 -1.47 -23.18 16 11 C -0.32 -14.96 4.88 84.04 0.41 -14.55 16 12 H 0.08 3.73 7.10 -2.91 -0.02 3.70 16 13 C 0.01 0.52 3.44 84.93 0.29 0.81 16 14 N -0.89 -45.94 11.54 21.66 0.25 -45.69 16 15 Si 0.94 34.26 27.03 68.60 1.85 36.11 16 16 H -0.25 -8.29 6.49 99.48 0.65 -7.65 16 17 H -0.29 -10.90 7.11 99.48 0.71 -10.19 16 18 H -0.24 -8.18 7.11 99.48 0.71 -7.48 16 19 C 0.12 5.27 3.26 46.19 0.15 5.42 16 20 C -0.11 -4.41 6.39 32.01 0.20 -4.21 16 21 C -0.11 -3.40 6.82 31.67 0.22 -3.19 16 22 C -0.11 -3.05 6.80 31.32 0.21 -2.84 16 23 C -0.12 -4.37 6.43 31.32 0.20 -4.17 16 24 C 0.05 1.78 11.45 85.24 0.98 2.75 16 25 N -0.31 -11.29 12.58 -57.02 -0.72 -12.01 16 26 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.17 6.27 3.61 -2.91 -0.01 6.26 16 30 H 0.38 15.11 8.08 -74.06 -0.60 14.51 16 31 H 0.27 13.50 8.31 -92.71 -0.77 12.73 16 32 H 0.05 2.59 7.00 -2.39 -0.02 2.57 16 33 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.07 2.95 7.01 -2.39 -0.02 2.93 16 35 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 36 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.06 2.27 6.83 -2.39 -0.02 2.25 16 40 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.19 6.27 7.78 -2.91 -0.02 6.25 16 Total: -1.00 -66.30 325.58 2.91 -63.39 By element: Atomic # 1 Polarization: 47.75 SS G_CDS: 0.40 Total: 48.15 kcal Atomic # 6 Polarization: 5.72 SS G_CDS: 5.51 Total: 11.23 kcal Atomic # 7 Polarization: -91.15 SS G_CDS: -3.42 Total: -94.58 kcal Atomic # 8 Polarization: -62.88 SS G_CDS: -1.44 Total: -64.31 kcal Atomic # 14 Polarization: 34.26 SS G_CDS: 1.85 Total: 36.11 kcal Total: -66.30 2.91 -63.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282979168.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.078 kcal (2) G-P(sol) polarization free energy of solvation -66.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds