Wall clock time and date at job start Tue Mar 31 2020 03:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34945 * 126.03964 * 2 1 4 4 C 1.35310 * 107.74528 * 180.14829 * 3 2 1 5 5 C 1.50708 * 126.03699 * 179.87240 * 4 3 2 6 6 H 1.08996 * 109.46994 * 342.01622 * 5 4 3 7 7 O 1.42899 * 109.47258 * 222.01139 * 5 4 3 8 8 C 1.50706 * 109.46972 * 102.01509 * 5 4 3 9 9 O 1.21291 * 120.00026 * 101.09246 * 8 5 4 10 10 N 1.34783 * 119.99691 * 281.36650 * 8 5 4 11 11 C 1.37097 * 119.99672 * 184.06090 * 10 8 5 12 12 H 1.08003 * 119.99900 * 172.54494 * 11 10 8 13 13 C 1.38953 * 120.00240 * 352.53750 * 11 10 8 14 14 N 1.31416 * 119.99393 * 93.72787 * 13 11 10 15 15 Si 1.86795 * 120.00259 * 273.73268 * 13 11 10 16 16 H 1.48496 * 109.47184 * 59.99515 * 15 13 11 17 17 H 1.48504 * 109.47198 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.46868 * 299.99815 * 15 13 11 19 19 C 1.46500 * 120.00064 * 4.05803 * 10 8 5 20 20 C 1.54268 * 110.03130 * 237.45369 * 19 10 8 21 21 C 1.54960 * 104.16008 * 217.13960 * 20 19 10 22 22 C 1.54885 * 102.77631 * 37.88750 * 21 20 19 23 23 C 1.53878 * 110.02836 * 120.23956 * 19 10 8 24 24 C 1.39865 * 107.92478 * 359.60354 * 4 3 2 25 25 N 1.30837 * 108.20003 * 0.24957 * 24 4 3 26 26 H 1.09000 * 109.46950 * 270.31170 * 1 2 3 27 27 H 1.08998 * 109.47096 * 30.30972 * 1 2 3 28 28 H 1.09000 * 109.47474 * 150.31169 * 1 2 3 29 29 H 1.08002 * 126.12703 * 359.97438 * 3 2 1 30 30 H 0.96702 * 114.00166 * 300.00545 * 7 5 4 31 31 H 0.97002 * 119.99602 * 184.90536 * 14 13 11 32 32 H 1.08996 * 110.01851 * 358.84702 * 19 10 8 33 33 H 1.09002 * 110.48809 * 335.78710 * 20 19 10 34 34 H 1.09004 * 110.48361 * 98.42790 * 20 19 10 35 35 H 1.09000 * 110.71833 * 279.57610 * 21 20 19 36 36 H 1.08999 * 110.92353 * 156.29705 * 21 20 19 37 37 H 1.09007 * 110.48503 * 203.40762 * 22 21 20 38 38 H 1.09000 * 110.60025 * 80.82363 * 22 21 20 39 39 H 1.09001 * 110.02808 * 238.56658 * 23 19 10 40 40 H 1.08995 * 110.03660 * 359.97438 * 23 19 10 41 41 H 1.08002 * 125.90461 * 180.21848 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5437 0.6664 -0.0033 5 6 4.7680 1.5452 -0.0073 6 1 4.4923 2.5509 -0.3244 7 8 5.7362 1.0092 -0.9113 8 6 5.3524 1.5986 1.3808 9 8 6.3213 0.9234 1.6573 10 7 4.7951 2.3926 2.3165 11 6 5.3750 2.5052 3.5537 12 1 5.0006 3.2299 4.2616 13 6 6.4443 1.6870 3.8969 14 7 7.6767 2.1061 3.7162 15 14 6.1301 -0.0086 4.6150 16 1 5.3537 -0.8211 3.6444 17 1 7.4270 -0.6764 4.8933 18 1 5.3599 0.1237 5.8778 19 6 3.5696 3.1353 2.0115 20 6 3.8014 4.6460 2.2209 21 6 2.4630 5.1565 2.8122 22 6 2.0374 3.9974 3.7472 23 6 2.4483 2.7229 2.9813 24 6 3.5347 -0.7322 0.0038 25 7 2.2892 -1.1328 0.0057 26 1 -0.3633 0.0056 1.0277 27 1 -0.3633 0.8872 -0.5186 28 1 -0.3634 -0.8927 -0.5090 29 1 1.9282 2.1193 -0.0004 30 1 6.0280 0.1142 -0.6900 31 1 8.4219 1.5095 3.8885 32 1 3.2633 2.9435 0.9833 33 1 4.6172 4.8130 2.9242 34 1 4.0104 5.1353 1.2696 35 1 1.7257 5.3073 2.0237 36 1 2.6132 6.0751 3.3794 37 1 0.9596 4.0142 3.9094 38 1 2.5663 4.0580 4.6984 39 1 1.5974 2.3319 2.4235 40 1 2.8157 1.9700 3.6785 41 1 4.4054 -1.3711 0.0066 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282979170.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:05:57 Heat of formation + Delta-G solvation = 2.627150 kcal Electronic energy + Delta-G solvation = -25422.032660 eV Core-core repulsion = 21918.138799 eV Total energy + Delta-G solvation = -3503.893861 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.35308 -40.59619 -38.62524 -37.13766 -35.08223 -34.26575 -33.96984 -31.94687 -29.43880 -28.80982 -28.50480 -27.13527 -25.47448 -22.27984 -22.21459 -21.40270 -21.23583 -20.82550 -19.02714 -18.41986 -17.78640 -16.76590 -16.59542 -16.30103 -16.20102 -15.98191 -15.59752 -15.33283 -14.87221 -14.54032 -14.42610 -14.19576 -14.03616 -13.70434 -13.49404 -13.36129 -13.08252 -12.83309 -12.75549 -12.40288 -12.29717 -12.06903 -11.91427 -11.83603 -11.76838 -11.46658 -11.36112 -11.29518 -10.67457 -10.36763 -9.92461 -9.72741 -9.15883 -8.81659 -5.29043 0.88564 1.27661 1.40158 1.48162 1.66725 1.69008 2.22396 2.35049 2.71657 3.17336 3.59425 3.69327 3.80846 3.90761 3.96903 4.08274 4.18171 4.30177 4.36324 4.47804 4.49376 4.56532 4.69583 4.73386 4.78911 4.82197 4.86704 4.96743 5.06916 5.15261 5.20687 5.32409 5.35317 5.49569 5.52512 5.58439 5.67348 6.10886 6.13944 6.61690 6.67982 6.86783 7.38920 7.71979 8.10945 8.47037 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.012157 B = 0.008549 C = 0.006589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2302.569437 B = 3274.631149 C = 4248.313504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.370 5.370 3 C 0.081 3.919 4 C -0.276 4.276 5 C 0.194 3.806 6 H 0.121 0.879 7 O -0.551 6.551 8 C 0.360 3.640 9 O -0.623 6.623 10 N -0.399 5.399 11 C -0.530 4.530 12 H 0.092 0.908 13 C 0.236 3.764 14 N -0.714 5.714 15 Si 0.819 3.181 16 H -0.299 1.299 17 H -0.294 1.294 18 H -0.276 1.276 19 C 0.123 3.877 20 C -0.136 4.136 21 C -0.108 4.108 22 C -0.116 4.116 23 C -0.123 4.123 24 C 0.046 3.954 25 N -0.325 5.325 26 H 0.084 0.916 27 H 0.124 0.876 28 H 0.092 0.908 29 H 0.214 0.786 30 H 0.381 0.619 31 H 0.280 0.720 32 H 0.097 0.903 33 H 0.049 0.951 34 H 0.074 0.926 35 H 0.094 0.906 36 H 0.069 0.931 37 H 0.086 0.914 38 H 0.042 0.958 39 H 0.080 0.920 40 H 0.038 0.962 41 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.074 4.219 -7.064 18.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.152 5.152 3 C -0.067 4.067 4 C -0.288 4.288 5 C 0.130 3.870 6 H 0.139 0.861 7 O -0.356 6.356 8 C 0.152 3.848 9 O -0.513 6.513 10 N -0.115 5.115 11 C -0.642 4.642 12 H 0.109 0.891 13 C 0.004 3.996 14 N -0.335 5.335 15 Si 0.640 3.360 16 H -0.227 1.227 17 H -0.221 1.221 18 H -0.201 1.201 19 C 0.019 3.981 20 C -0.174 4.174 21 C -0.145 4.145 22 C -0.153 4.153 23 C -0.161 4.161 24 C -0.139 4.139 25 N -0.148 5.148 26 H 0.102 0.898 27 H 0.143 0.857 28 H 0.111 0.889 29 H 0.230 0.770 30 H 0.230 0.770 31 H 0.092 0.908 32 H 0.115 0.885 33 H 0.068 0.932 34 H 0.092 0.908 35 H 0.113 0.887 36 H 0.088 0.912 37 H 0.105 0.895 38 H 0.061 0.939 39 H 0.098 0.902 40 H 0.057 0.943 41 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -17.445 3.639 -7.186 19.214 hybrid contribution 1.302 -1.372 1.101 2.189 sum -16.142 2.267 -6.085 17.399 Atomic orbital electron populations 1.22299 0.71368 1.06484 1.04742 1.48818 1.08044 1.02879 1.55436 1.22698 0.89421 0.94779 0.99815 1.20557 0.95428 0.94334 1.18515 1.19654 0.84247 0.96339 0.86717 0.86109 1.86407 1.61057 1.36732 1.51454 1.21125 0.87560 0.87721 0.88360 1.90359 1.32136 1.48703 1.80115 1.43689 1.20797 1.37297 1.09746 1.17801 1.21375 1.30393 0.94640 0.89064 1.24998 0.92178 0.96736 0.85730 1.70886 1.02248 1.37739 1.22594 0.87767 0.78390 0.91499 0.78306 1.22705 1.22112 1.20122 1.22104 0.84722 0.92132 0.99173 1.22749 0.98973 0.94347 1.01340 1.22424 0.95727 0.97371 0.99017 1.22274 1.01080 0.94053 0.97930 1.22359 0.97075 0.98451 0.98205 1.23668 0.95487 0.95167 0.99594 1.77236 1.01617 1.09876 1.26073 0.89756 0.85731 0.88901 0.76978 0.77020 0.90825 0.88487 0.93249 0.90781 0.88704 0.91205 0.89521 0.93885 0.90157 0.94337 0.81019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.22 11.47 127.77 1.47 2.68 16 2 N -0.37 -9.35 4.01 -369.57 -1.48 -10.84 16 3 C 0.08 2.06 9.66 83.54 0.81 2.86 16 4 C -0.28 -9.35 4.77 -20.14 -0.10 -9.44 16 5 C 0.19 7.51 3.03 29.11 0.09 7.60 16 6 H 0.12 4.08 6.89 -2.39 -0.02 4.06 16 7 O -0.55 -22.09 13.05 -130.66 -1.71 -23.80 16 8 C 0.36 17.83 6.84 87.66 0.60 18.43 16 9 O -0.62 -36.31 12.37 15.26 0.19 -36.12 16 10 N -0.40 -18.89 2.56 -609.35 -1.56 -20.45 16 11 C -0.53 -28.83 7.68 84.04 0.65 -28.18 16 12 H 0.09 5.03 7.41 -2.91 -0.02 5.01 16 13 C 0.24 13.49 3.02 84.93 0.26 13.75 16 14 N -0.71 -41.43 13.57 21.66 0.29 -41.13 16 15 Si 0.82 44.59 28.23 68.60 1.94 46.53 16 16 H -0.30 -17.74 7.11 99.48 0.71 -17.04 16 17 H -0.29 -15.82 7.11 99.48 0.71 -15.12 16 18 H -0.28 -14.37 7.11 99.48 0.71 -13.66 16 19 C 0.12 4.19 2.69 45.72 0.12 4.31 16 20 C -0.14 -4.22 6.37 31.69 0.20 -4.02 16 21 C -0.11 -2.42 6.91 31.91 0.22 -2.20 16 22 C -0.12 -2.95 6.83 31.67 0.22 -2.74 16 23 C -0.12 -3.79 6.28 31.32 0.20 -3.59 16 24 C 0.05 1.65 11.46 85.23 0.98 2.63 16 25 N -0.33 -10.97 12.58 -57.02 -0.72 -11.69 16 26 H 0.08 1.00 8.14 -2.39 -0.02 0.99 16 27 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.21 3.49 6.87 -2.91 -0.02 3.47 16 30 H 0.38 14.50 8.04 -74.06 -0.60 13.91 16 31 H 0.28 15.37 8.32 -92.71 -0.77 14.60 16 32 H 0.10 2.74 3.05 -2.39 -0.01 2.73 16 33 H 0.05 1.96 6.67 -2.39 -0.02 1.94 16 34 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 35 H 0.09 1.51 8.14 -2.39 -0.02 1.50 16 36 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.09 1.67 8.14 -2.38 -0.02 1.65 16 38 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.08 1.93 7.71 -2.39 -0.02 1.92 16 40 H 0.04 1.54 7.36 -2.39 -0.02 1.52 16 41 H 0.17 6.11 7.82 -2.91 -0.02 6.09 16 Total: -1.00 -78.33 329.98 3.11 -75.22 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: 0.46 Total: 20.19 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: 5.70 Total: 2.09 kcal Atomic # 7 Polarization: -80.64 SS G_CDS: -3.47 Total: -84.11 kcal Atomic # 8 Polarization: -58.40 SS G_CDS: -1.52 Total: -59.91 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 1.94 Total: 46.53 kcal Total: -78.33 3.11 -75.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282979170.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.847 kcal (2) G-P(sol) polarization free energy of solvation -78.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds