Wall clock time and date at job start Tue Mar 31 2020 03:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50703 * 119.99609 * 2 1 4 4 N 1.46901 * 109.47166 * 125.84238 * 3 2 1 5 5 C 1.46904 * 110.99758 * 298.67884 * 4 3 2 6 6 C 1.50701 * 109.46858 * 288.76495 * 5 4 3 7 7 H 1.08002 * 119.99948 * 4.42421 * 6 5 4 8 8 C 1.37879 * 120.00026 * 184.41974 * 6 5 4 9 9 N 1.31507 * 119.99746 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 119.99927 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47402 * 59.99537 * 10 8 6 12 12 H 1.48500 * 109.47094 * 180.02562 * 10 8 6 13 13 H 1.48510 * 109.47026 * 299.99546 * 10 8 6 14 14 C 1.46906 * 111.00021 * 62.62909 * 4 3 2 15 15 C 1.50697 * 109.47011 * 69.22335 * 14 4 3 16 16 C 1.35016 * 120.15972 * 247.03958 * 15 14 4 17 17 C 1.41572 * 119.11845 * 179.74822 * 16 15 14 18 18 O 1.21778 * 120.31344 * 180.31274 * 17 16 15 19 19 N 1.34842 * 119.38371 * 0.54851 * 17 16 15 20 20 C 1.46493 * 119.87052 * 179.73672 * 19 17 16 21 21 C 1.34601 * 120.26185 * 359.71911 * 19 17 16 22 22 O 1.21580 * 119.53768 * 180.02562 * 21 19 17 23 23 N 1.34547 * 120.93015 * 0.02562 * 21 19 17 24 24 C 1.46500 * 119.68684 * 180.02562 * 23 21 19 25 25 H 1.07997 * 119.99316 * 180.02562 * 1 2 3 26 26 H 1.07994 * 119.99882 * 0.02562 * 1 2 3 27 27 H 1.07994 * 119.99882 * 179.97438 * 2 1 3 28 28 H 1.08990 * 109.47343 * 5.83892 * 3 2 1 29 29 H 1.09002 * 109.46474 * 245.83834 * 3 2 1 30 30 H 1.08997 * 109.47225 * 48.76317 * 5 4 3 31 31 H 1.08995 * 109.47183 * 168.77071 * 5 4 3 32 32 H 0.97001 * 119.99830 * 179.97438 * 9 8 6 33 33 H 1.09004 * 109.46837 * 189.22555 * 14 4 3 34 34 H 1.09000 * 109.46949 * 309.22622 * 14 4 3 35 35 H 1.08007 * 120.44183 * 0.02562 * 16 15 14 36 36 H 1.09004 * 109.47583 * 269.98108 * 20 19 17 37 37 H 1.08997 * 109.47151 * 29.98053 * 20 19 17 38 38 H 1.09002 * 109.46987 * 149.97952 * 20 19 17 39 39 H 1.08993 * 109.47520 * 274.09531 * 24 23 21 40 40 H 1.08993 * 109.47350 * 34.10303 * 24 23 21 41 41 H 1.09003 * 109.46788 * 154.10109 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 3.0107 1.3238 1.1227 5 6 2.3064 1.2165 2.4074 6 6 1.5693 2.5013 2.6851 7 1 1.5601 3.2891 1.9463 8 6 0.9067 2.6711 3.8822 9 7 0.9175 1.7117 4.7815 10 14 -0.0075 4.2634 4.2260 11 1 -1.0634 4.4594 3.2004 12 1 -0.6306 4.1957 5.5722 13 1 0.9456 5.4015 4.1789 14 6 4.0146 0.2605 0.9823 15 6 4.9273 0.5809 -0.1732 16 6 4.9149 -0.1900 -1.2815 17 6 5.7777 0.1343 -2.3561 18 8 5.7802 -0.5429 -3.3682 19 7 6.6002 1.1971 -2.2465 20 6 7.5016 1.5389 -3.3496 21 6 6.5961 1.9456 -1.1278 22 8 7.3428 2.9013 -1.0433 23 7 5.7772 1.6510 -0.1016 24 6 5.7948 2.4844 1.1031 25 1 -0.5399 -0.9353 0.0004 26 1 -0.5399 0.9353 -0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3598 2.1309 0.1045 29 1 2.6094 1.4094 -0.9377 30 1 1.5951 0.3917 2.3641 31 1 3.0281 1.0325 3.2032 32 1 0.4516 1.8313 5.6239 33 1 4.5999 0.1902 1.8991 34 1 3.5138 -0.6897 0.7970 35 1 4.2522 -1.0402 -1.3493 36 1 8.4512 1.0204 -3.2169 37 1 7.0508 1.2354 -4.2944 38 1 7.6734 2.6153 -3.3582 39 1 6.5754 2.1322 1.7772 40 1 5.9940 3.5195 0.8259 41 1 4.8280 2.4216 1.6025 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292140832.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:08:23 Heat of formation + Delta-G solvation = 1.566105 kcal Electronic energy + Delta-G solvation = -24355.024103 eV Core-core repulsion = 20851.084232 eV Total energy + Delta-G solvation = -3503.939871 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 1.91 seconds Orbital eigenvalues (eV) -42.28184 -38.97352 -38.47154 -36.58426 -35.15683 -33.01092 -32.53866 -31.80616 -29.22135 -27.26590 -26.69918 -26.40786 -24.27922 -23.28443 -22.19609 -21.18794 -19.30884 -18.81802 -17.65203 -17.11964 -16.71690 -16.31990 -15.51755 -15.39555 -15.19321 -14.69581 -14.49164 -14.40531 -14.16594 -13.75952 -13.43850 -13.38737 -12.84798 -12.51904 -12.39589 -12.32330 -12.01488 -11.83110 -11.51019 -11.14948 -11.02417 -10.89496 -10.81546 -10.74298 -10.63421 -10.21227 -10.02392 -9.78682 -9.45471 -8.92391 -8.55421 -8.41431 -7.65827 -6.16079 -4.17924 1.03939 2.00094 2.04061 2.72083 3.06798 3.25227 3.30661 3.32676 3.49954 4.21327 4.35106 4.65514 4.73490 5.10414 5.21610 5.24475 5.28363 5.33931 5.36783 5.46619 5.52980 5.55684 5.60484 5.64163 5.73607 5.79075 5.89513 6.14001 6.21133 6.26621 6.43122 6.56739 6.92027 7.00313 7.08321 7.22685 7.28807 7.54205 7.56204 7.77851 7.93404 7.95762 8.27169 8.87701 9.46833 10.94349 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.020252 B = 0.004568 C = 0.004030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.229518 B = 6128.503664 C = 6947.073803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.184 4.184 3 C 0.086 3.914 4 N -0.525 5.525 5 C 0.191 3.809 6 C -0.509 4.509 7 H 0.062 0.938 8 C 0.060 3.940 9 N -0.896 5.896 10 Si 0.896 3.104 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.276 1.276 14 C 0.069 3.931 15 C 0.236 3.764 16 C -0.317 4.317 17 C 0.552 3.448 18 O -0.529 6.529 19 N -0.560 5.560 20 C 0.082 3.918 21 C 0.690 3.310 22 O -0.545 6.545 23 N -0.515 5.515 24 C 0.066 3.934 25 H 0.087 0.913 26 H 0.097 0.903 27 H 0.099 0.901 28 H 0.090 0.910 29 H 0.062 0.938 30 H 0.005 0.995 31 H 0.033 0.967 32 H 0.263 0.737 33 H 0.099 0.901 34 H 0.071 0.929 35 H 0.166 0.834 36 H 0.070 0.930 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.067 0.933 40 H 0.086 0.914 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.594 -2.804 -9.100 12.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.204 4.204 3 C -0.042 4.042 4 N -0.249 5.249 5 C 0.067 3.933 6 C -0.547 4.547 7 H 0.080 0.920 8 C -0.142 4.142 9 N -0.535 5.535 10 Si 0.724 3.276 11 H -0.203 1.203 12 H -0.214 1.214 13 H -0.201 1.201 14 C -0.060 4.060 15 C 0.128 3.872 16 C -0.345 4.345 17 C 0.350 3.650 18 O -0.406 6.406 19 N -0.304 5.304 20 C -0.060 4.060 21 C 0.394 3.606 22 O -0.419 6.419 23 N -0.233 5.233 24 C -0.075 4.075 25 H 0.106 0.894 26 H 0.116 0.884 27 H 0.117 0.883 28 H 0.108 0.892 29 H 0.080 0.920 30 H 0.023 0.977 31 H 0.051 0.949 32 H 0.073 0.927 33 H 0.117 0.883 34 H 0.088 0.912 35 H 0.183 0.817 36 H 0.088 0.912 37 H 0.109 0.891 38 H 0.107 0.893 39 H 0.085 0.915 40 H 0.105 0.895 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 8.284 -2.093 -9.367 12.679 hybrid contribution -1.000 -0.075 0.370 1.068 sum 7.284 -2.168 -8.997 11.778 Atomic orbital electron populations 1.23739 0.96030 1.01355 1.00005 1.23454 0.96755 0.99478 1.00697 1.21306 0.94486 0.95087 0.93289 1.62541 1.15282 1.41403 1.05624 1.19857 0.92962 0.97543 0.82953 1.20995 1.31346 1.00814 1.01570 0.91976 1.24924 0.96517 0.96690 0.96044 1.69922 1.43278 1.32569 1.07695 0.86592 0.80009 0.83663 0.77336 1.20298 1.21370 1.20145 1.21435 0.93792 0.96266 0.94487 1.21150 0.86635 0.83522 0.95907 1.21611 1.10401 1.08490 0.93991 1.17313 0.79700 0.79259 0.88733 1.90838 1.68474 1.49771 1.31557 1.46390 1.38853 1.28308 1.16889 1.21826 0.92825 1.02906 0.88407 1.15922 0.81657 0.83011 0.80034 1.90980 1.41905 1.28637 1.80384 1.44657 1.34048 1.27299 1.17292 1.22472 1.06686 0.94941 0.83413 0.89413 0.88423 0.88270 0.89176 0.92000 0.97707 0.94865 0.92748 0.88304 0.91155 0.81673 0.91166 0.89105 0.89263 0.91470 0.89506 0.85081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.66 14.32 29.01 0.42 -2.24 16 2 C -0.18 -2.83 7.50 -36.03 -0.27 -3.11 16 3 C 0.09 1.40 5.51 -4.97 -0.03 1.37 16 4 N -0.53 -8.91 2.93 -238.96 -0.70 -9.60 16 5 C 0.19 4.13 4.59 -4.97 -0.02 4.10 16 6 C -0.51 -12.51 8.63 -34.44 -0.30 -12.80 16 7 H 0.06 1.53 7.31 -52.49 -0.38 1.14 16 8 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 9 N -0.90 -24.36 13.29 55.43 0.74 -23.62 16 10 Si 0.90 20.15 29.54 -169.99 -5.02 15.13 16 11 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 12 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 13 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 14 C 0.07 0.94 4.12 -4.97 -0.02 0.92 16 15 C 0.24 3.14 5.22 -81.51 -0.43 2.72 16 16 C -0.32 -4.26 9.47 -39.46 -0.37 -4.63 16 17 C 0.55 8.30 7.44 -14.96 -0.11 8.19 16 18 O -0.53 -9.11 16.70 5.12 0.09 -9.03 16 19 N -0.56 -7.94 2.96 -131.50 -0.39 -8.33 16 20 C 0.08 0.93 10.13 59.84 0.61 1.53 16 21 C 0.69 10.40 8.12 -87.28 -0.71 9.69 16 22 O -0.54 -9.15 15.42 5.30 0.08 -9.07 16 23 N -0.51 -7.20 3.01 -124.34 -0.37 -7.58 16 24 C 0.07 0.86 9.82 59.85 0.59 1.45 16 25 H 0.09 1.20 8.06 -52.49 -0.42 0.78 16 26 H 0.10 1.54 7.84 -52.49 -0.41 1.13 16 27 H 0.10 1.38 6.64 -52.49 -0.35 1.04 16 28 H 0.09 1.64 6.76 -51.93 -0.35 1.29 16 29 H 0.06 0.95 7.21 -51.93 -0.37 0.57 16 30 H 0.01 0.12 6.79 -51.93 -0.35 -0.23 16 31 H 0.03 0.77 7.78 -51.93 -0.40 0.36 16 32 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 33 H 0.10 1.29 7.53 -51.93 -0.39 0.90 16 34 H 0.07 0.90 5.87 -51.93 -0.30 0.60 16 35 H 0.17 1.99 7.94 -52.48 -0.42 1.57 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.09 0.98 7.42 -51.93 -0.39 0.59 16 38 H 0.09 0.96 7.39 -51.93 -0.38 0.57 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.09 1.17 7.50 -51.93 -0.39 0.78 16 41 H 0.13 1.92 5.39 -51.93 -0.28 1.64 16 LS Contribution 337.50 15.07 5.09 5.09 Total: -1.00 -29.28 337.50 -6.82 -36.10 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -5.58 Total: 2.25 kcal Atomic # 6 Polarization: 9.41 SS G_CDS: -0.75 Total: 8.66 kcal Atomic # 7 Polarization: -48.41 SS G_CDS: -0.73 Total: -49.14 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: 0.17 Total: -18.10 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.28 -6.82 -36.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292140832.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.669 kcal (2) G-P(sol) polarization free energy of solvation -29.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.91 seconds