Wall clock time and date at job start Tue Mar 31 2020 03:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50703 * 119.99609 * 2 1 4 4 N 1.46901 * 109.47166 * 125.84238 * 3 2 1 5 5 C 1.46904 * 110.99758 * 298.67884 * 4 3 2 6 6 C 1.50701 * 109.46858 * 288.76495 * 5 4 3 7 7 H 1.08002 * 119.99948 * 4.42421 * 6 5 4 8 8 C 1.37879 * 120.00026 * 184.41974 * 6 5 4 9 9 N 1.31507 * 119.99746 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 119.99927 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47402 * 59.99537 * 10 8 6 12 12 H 1.48500 * 109.47094 * 180.02562 * 10 8 6 13 13 H 1.48510 * 109.47026 * 299.99546 * 10 8 6 14 14 C 1.46906 * 111.00021 * 62.62909 * 4 3 2 15 15 C 1.50697 * 109.47011 * 69.22335 * 14 4 3 16 16 C 1.35016 * 120.15972 * 247.03958 * 15 14 4 17 17 C 1.41572 * 119.11845 * 179.74822 * 16 15 14 18 18 O 1.21778 * 120.31344 * 180.31274 * 17 16 15 19 19 N 1.34842 * 119.38371 * 0.54851 * 17 16 15 20 20 C 1.46493 * 119.87052 * 179.73672 * 19 17 16 21 21 C 1.34601 * 120.26185 * 359.71911 * 19 17 16 22 22 O 1.21580 * 119.53768 * 180.02562 * 21 19 17 23 23 N 1.34547 * 120.93015 * 0.02562 * 21 19 17 24 24 C 1.46500 * 119.68684 * 180.02562 * 23 21 19 25 25 H 1.07997 * 119.99316 * 180.02562 * 1 2 3 26 26 H 1.07994 * 119.99882 * 0.02562 * 1 2 3 27 27 H 1.07994 * 119.99882 * 179.97438 * 2 1 3 28 28 H 1.08990 * 109.47343 * 5.83892 * 3 2 1 29 29 H 1.09002 * 109.46474 * 245.83834 * 3 2 1 30 30 H 1.08997 * 109.47225 * 48.76317 * 5 4 3 31 31 H 1.08995 * 109.47183 * 168.77071 * 5 4 3 32 32 H 0.97001 * 119.99830 * 179.97438 * 9 8 6 33 33 H 1.09004 * 109.46837 * 189.22555 * 14 4 3 34 34 H 1.09000 * 109.46949 * 309.22622 * 14 4 3 35 35 H 1.08007 * 120.44183 * 0.02562 * 16 15 14 36 36 H 1.09004 * 109.47583 * 269.98108 * 20 19 17 37 37 H 1.08997 * 109.47151 * 29.98053 * 20 19 17 38 38 H 1.09002 * 109.46987 * 149.97952 * 20 19 17 39 39 H 1.08993 * 109.47520 * 274.09531 * 24 23 21 40 40 H 1.08993 * 109.47350 * 34.10303 * 24 23 21 41 41 H 1.09003 * 109.46788 * 154.10109 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 3.0107 1.3238 1.1227 5 6 2.3064 1.2165 2.4074 6 6 1.5693 2.5013 2.6851 7 1 1.5601 3.2891 1.9463 8 6 0.9067 2.6711 3.8822 9 7 0.9175 1.7117 4.7815 10 14 -0.0075 4.2634 4.2260 11 1 -1.0634 4.4594 3.2004 12 1 -0.6306 4.1957 5.5722 13 1 0.9456 5.4015 4.1789 14 6 4.0146 0.2605 0.9823 15 6 4.9273 0.5809 -0.1732 16 6 4.9149 -0.1900 -1.2815 17 6 5.7777 0.1343 -2.3561 18 8 5.7802 -0.5429 -3.3682 19 7 6.6002 1.1971 -2.2465 20 6 7.5016 1.5389 -3.3496 21 6 6.5961 1.9456 -1.1278 22 8 7.3428 2.9013 -1.0433 23 7 5.7772 1.6510 -0.1016 24 6 5.7948 2.4844 1.1031 25 1 -0.5399 -0.9353 0.0004 26 1 -0.5399 0.9353 -0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3598 2.1309 0.1045 29 1 2.6094 1.4094 -0.9377 30 1 1.5951 0.3917 2.3641 31 1 3.0281 1.0325 3.2032 32 1 0.4516 1.8313 5.6239 33 1 4.5999 0.1902 1.8991 34 1 3.5138 -0.6897 0.7970 35 1 4.2522 -1.0402 -1.3493 36 1 8.4512 1.0204 -3.2169 37 1 7.0508 1.2354 -4.2944 38 1 7.6734 2.6153 -3.3582 39 1 6.5754 2.1322 1.7772 40 1 5.9940 3.5195 0.8259 41 1 4.8280 2.4216 1.6025 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292140832.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:08:21 Heat of formation + Delta-G solvation = -15.345382 kcal Electronic energy + Delta-G solvation = -24355.757440 eV Core-core repulsion = 20851.084232 eV Total energy + Delta-G solvation = -3504.673208 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.43029 -40.17378 -39.73823 -37.85751 -36.32910 -34.80027 -33.81172 -33.04546 -30.49508 -28.81160 -27.84442 -27.55142 -25.80777 -24.42699 -23.53062 -22.58702 -20.55420 -20.01879 -18.72756 -18.31576 -18.26209 -17.78510 -16.97449 -16.55144 -16.52394 -16.08402 -15.80762 -15.68478 -15.49556 -15.01292 -14.57303 -14.51189 -14.12181 -13.87121 -13.82822 -13.31823 -13.19704 -13.12178 -13.05454 -12.72380 -12.60121 -12.28996 -12.17332 -12.06893 -11.98925 -11.86644 -11.42158 -11.21916 -10.90102 -10.52279 -10.15743 -9.54152 -9.07501 -8.12381 -6.18332 -0.08916 0.84472 0.91676 1.46240 1.47833 1.50071 1.54326 1.96347 2.34536 2.46441 3.06287 3.22666 3.42611 3.62503 3.98735 4.10094 4.22994 4.29473 4.38338 4.39273 4.44774 4.48134 4.54576 4.57575 4.67907 4.69903 4.73636 5.00749 5.04439 5.10805 5.12731 5.29921 5.37993 5.45566 5.70344 5.78686 5.93442 6.08656 6.16117 6.31434 6.37852 6.55074 6.80218 6.95464 7.49898 8.97348 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.020252 B = 0.004568 C = 0.004030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.229518 B = 6128.503664 C = 6947.073803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.189 4.189 3 C 0.090 3.910 4 N -0.526 5.526 5 C 0.209 3.791 6 C -0.511 4.511 7 H 0.058 0.942 8 C 0.013 3.987 9 N -0.928 5.928 10 Si 0.950 3.050 11 H -0.274 1.274 12 H -0.290 1.290 13 H -0.271 1.271 14 C 0.073 3.927 15 C 0.241 3.759 16 C -0.309 4.309 17 C 0.549 3.451 18 O -0.554 6.554 19 N -0.560 5.560 20 C 0.077 3.923 21 C 0.689 3.311 22 O -0.565 6.565 23 N -0.515 5.515 24 C 0.070 3.930 25 H 0.106 0.894 26 H 0.086 0.914 27 H 0.120 0.880 28 H 0.066 0.934 29 H 0.075 0.925 30 H -0.014 1.014 31 H 0.018 0.982 32 H 0.261 0.739 33 H 0.108 0.892 34 H 0.088 0.912 35 H 0.183 0.817 36 H 0.084 0.916 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.951 -3.107 -9.708 12.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.209 4.209 3 C -0.038 4.038 4 N -0.249 5.249 5 C 0.084 3.916 6 C -0.550 4.550 7 H 0.076 0.924 8 C -0.185 4.185 9 N -0.569 5.569 10 Si 0.777 3.223 11 H -0.200 1.200 12 H -0.215 1.215 13 H -0.197 1.197 14 C -0.055 4.055 15 C 0.133 3.867 16 C -0.336 4.336 17 C 0.348 3.652 18 O -0.433 6.433 19 N -0.304 5.304 20 C -0.064 4.064 21 C 0.392 3.608 22 O -0.441 6.441 23 N -0.232 5.232 24 C -0.071 4.071 25 H 0.124 0.876 26 H 0.105 0.895 27 H 0.137 0.863 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.004 0.996 31 H 0.036 0.964 32 H 0.070 0.930 33 H 0.126 0.874 34 H 0.105 0.895 35 H 0.200 0.800 36 H 0.103 0.897 37 H 0.114 0.886 38 H 0.112 0.888 39 H 0.104 0.896 40 H 0.101 0.899 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 8.649 -2.387 -9.995 13.432 hybrid contribution -1.071 0.017 0.497 1.181 sum 7.578 -2.371 -9.497 12.380 Atomic orbital electron populations 1.23883 0.96303 1.01782 0.99841 1.23546 0.96873 0.99670 1.00780 1.21222 0.94225 0.94980 0.93359 1.62342 1.15306 1.43311 1.03945 1.19440 0.92077 0.95411 0.84697 1.21331 1.30788 1.01733 1.01110 0.92356 1.25599 0.97537 0.99195 0.96215 1.70022 1.44576 1.34222 1.08083 0.85731 0.78997 0.80678 0.76936 1.19969 1.21548 1.19670 1.21446 0.93050 0.95837 0.95192 1.21020 0.86549 0.83449 0.95689 1.21756 1.09958 1.08732 0.93150 1.17523 0.79800 0.79138 0.88740 1.90833 1.69312 1.50616 1.32512 1.46495 1.38859 1.27854 1.17143 1.22025 0.93064 1.03479 0.87804 1.15982 0.81626 0.82877 0.80279 1.90969 1.42819 1.29495 1.80783 1.44723 1.33847 1.27392 1.17268 1.22435 1.06505 0.94841 0.83306 0.87610 0.89538 0.86269 0.91525 0.90668 0.99602 0.96401 0.92986 0.87438 0.89455 0.79983 0.89730 0.88590 0.88785 0.89604 0.89917 0.86440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.31 14.32 67.77 0.97 -4.34 16 2 C -0.19 -5.49 7.50 25.64 0.19 -5.30 16 3 C 0.09 2.82 5.51 85.56 0.47 3.29 16 4 N -0.53 -17.23 2.93 -909.93 -2.66 -19.89 16 5 C 0.21 8.97 4.59 85.56 0.39 9.36 16 6 C -0.51 -25.07 8.63 25.60 0.22 -24.85 16 7 H 0.06 2.86 7.31 -2.91 -0.02 2.83 16 8 C 0.01 0.67 5.46 84.66 0.46 1.14 16 9 N -0.93 -50.73 13.29 21.45 0.28 -50.45 16 10 Si 0.95 41.21 29.54 68.60 2.03 43.23 16 11 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 12 H -0.29 -12.56 7.11 99.48 0.71 -11.86 16 13 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 14 C 0.07 1.84 4.12 85.55 0.35 2.20 16 15 C 0.24 5.88 5.22 41.04 0.21 6.10 16 16 C -0.31 -7.50 9.47 22.35 0.21 -7.29 16 17 C 0.55 15.46 7.44 85.05 0.63 16.10 16 18 O -0.55 -18.14 16.70 -4.60 -0.08 -18.22 16 19 N -0.56 -14.96 2.96 -806.46 -2.39 -17.34 16 20 C 0.08 1.62 10.13 127.77 1.29 2.92 16 21 C 0.69 19.69 8.12 179.18 1.45 21.15 16 22 O -0.56 -18.26 15.42 -3.97 -0.06 -18.32 16 23 N -0.51 -13.51 3.01 -665.70 -2.00 -15.51 16 24 C 0.07 1.74 9.82 127.77 1.25 2.99 16 25 H 0.11 2.70 8.06 -2.91 -0.02 2.68 16 26 H 0.09 2.71 7.84 -2.91 -0.02 2.69 16 27 H 0.12 2.97 6.64 -2.91 -0.02 2.95 16 28 H 0.07 2.40 6.76 -2.39 -0.02 2.39 16 29 H 0.08 2.16 7.21 -2.39 -0.02 2.14 16 30 H -0.01 -0.64 6.79 -2.39 -0.02 -0.66 16 31 H 0.02 0.82 7.78 -2.39 -0.02 0.81 16 32 H 0.26 13.76 8.31 -92.71 -0.77 12.99 16 33 H 0.11 2.59 7.53 -2.39 -0.02 2.57 16 34 H 0.09 1.97 5.87 -2.39 -0.01 1.96 16 35 H 0.18 3.78 7.94 -2.91 -0.02 3.76 16 36 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.10 1.93 7.42 -2.39 -0.02 1.91 16 38 H 0.09 1.89 7.39 -2.39 -0.02 1.88 16 39 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.08 2.14 7.50 -2.39 -0.02 2.13 16 41 H 0.12 3.32 5.39 -2.39 -0.01 3.31 16 Total: -1.00 -61.26 337.50 4.28 -56.99 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: 1.04 Total: 16.07 kcal Atomic # 6 Polarization: 15.33 SS G_CDS: 8.12 Total: 23.45 kcal Atomic # 7 Polarization: -96.43 SS G_CDS: -6.77 Total: -103.20 kcal Atomic # 8 Polarization: -36.41 SS G_CDS: -0.14 Total: -36.54 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 2.03 Total: 43.23 kcal Total: -61.26 4.28 -56.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292140832.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.641 kcal (2) G-P(sol) polarization free energy of solvation -61.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds