Wall clock time and date at job start Tue Mar 31 2020 03:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50701 * 119.99808 * 2 1 4 4 N 1.46495 * 109.47040 * 125.00166 * 3 2 1 5 5 C 1.46501 * 120.00151 * 269.99575 * 4 3 2 6 6 C 1.50696 * 109.47003 * 270.00358 * 5 4 3 7 7 H 1.07996 * 120.00571 * 359.97438 * 6 5 4 8 8 C 1.37877 * 119.99934 * 179.97438 * 6 5 4 9 9 N 1.31510 * 120.00494 * 179.97438 * 8 6 5 10 10 Si 1.86805 * 120.00086 * 359.97438 * 8 6 5 11 11 H 1.48506 * 109.47240 * 89.99697 * 10 8 6 12 12 H 1.48496 * 109.47289 * 210.00009 * 10 8 6 13 13 H 1.48507 * 109.46553 * 330.00180 * 10 8 6 14 14 C 1.34780 * 119.99833 * 90.00232 * 4 3 2 15 15 O 1.21281 * 119.99699 * 180.02562 * 14 4 3 16 16 C 1.50700 * 120.00301 * 359.97438 * 14 4 3 17 17 O 1.42899 * 109.47140 * 180.02562 * 16 14 4 18 18 C 1.42903 * 113.99629 * 180.02562 * 17 16 14 19 19 C 1.50701 * 109.46878 * 179.97438 * 18 17 16 20 20 C 1.35318 * 126.12685 * 359.69178 * 19 18 17 21 21 C 1.39867 * 107.91698 * 179.90351 * 20 19 18 22 22 N 1.30835 * 108.20391 * 0.36108 * 21 20 19 23 23 N 1.34942 * 126.12730 * 179.97438 * 19 18 17 24 24 C 1.46504 * 126.03533 * 359.94220 * 23 19 18 25 25 H 1.07999 * 120.00143 * 180.02562 * 1 2 3 26 26 H 1.08005 * 120.00062 * 359.97438 * 1 2 3 27 27 H 1.07998 * 119.99800 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.47158 * 4.99904 * 3 2 1 29 29 H 1.09001 * 109.46794 * 245.00393 * 3 2 1 30 30 H 1.09001 * 109.46980 * 30.00425 * 5 4 3 31 31 H 1.08997 * 109.47188 * 150.00080 * 5 4 3 32 32 H 0.97001 * 120.00366 * 179.97438 * 9 8 6 33 33 H 1.09007 * 109.46405 * 60.00333 * 16 14 4 34 34 H 1.09004 * 109.47198 * 300.00818 * 16 14 4 35 35 H 1.09002 * 109.47382 * 59.99956 * 18 17 16 36 36 H 1.09001 * 109.46938 * 299.99942 * 18 17 16 37 37 H 1.08002 * 126.03759 * 0.02757 * 20 19 18 38 38 H 1.08001 * 125.89573 * 180.14053 * 21 20 19 39 39 H 1.09004 * 109.46977 * 90.00192 * 24 23 19 40 40 H 1.09004 * 109.47012 * 209.99486 * 24 23 19 41 41 H 1.08994 * 109.47199 * 330.00398 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.5589 1.8650 2.4248 6 6 2.8443 3.3436 2.4803 7 1 3.3040 3.8370 1.6367 8 6 2.5185 4.0668 3.6081 9 7 2.7679 5.3571 3.6568 10 14 1.7227 3.2138 5.0671 11 1 2.7779 2.7227 5.9893 12 1 0.8462 4.1742 5.7843 13 1 0.9114 2.0662 4.5872 14 6 4.2497 0.8663 0.9822 15 8 5.0197 0.8880 1.9190 16 6 4.6970 0.3175 -0.3481 17 8 6.0570 -0.1108 -0.2538 18 6 6.5819 -0.6503 -1.4685 19 6 8.0145 -1.0666 -1.2554 20 6 8.7162 -0.9507 -0.1042 21 6 10.0012 -1.4543 -0.3309 22 7 10.0710 -1.8509 -1.5757 23 7 8.8291 -1.6169 -2.1799 24 6 8.4766 -1.9168 -3.5699 25 1 -0.5400 -0.9353 0.0004 26 1 -0.5400 0.9353 0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3585 2.1317 0.0895 29 1 2.6212 1.4026 -0.9314 30 1 1.4888 1.6967 2.5459 31 1 3.0990 1.3604 3.2259 32 1 2.5384 5.8659 4.4501 33 1 4.6120 1.0940 -1.1084 34 1 4.0678 -0.5295 -0.6219 35 1 6.5365 0.1064 -2.2518 36 1 5.9917 -1.5170 -1.7660 37 1 8.3482 -0.5434 0.8260 38 1 10.7992 -1.5037 0.3952 39 1 8.7027 -1.0539 -4.1964 40 1 9.0527 -2.7761 -3.9135 41 1 7.4124 -2.1436 -3.6341 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292591904.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:38 Heat of formation + Delta-G solvation = 9.754655 kcal Electronic energy + Delta-G solvation = -22988.858915 eV Core-core repulsion = 19485.274126 eV Total energy + Delta-G solvation = -3503.584789 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.20338 -40.87270 -38.66856 -37.20000 -35.05686 -34.28357 -33.73811 -32.36086 -30.85662 -28.61614 -27.62240 -26.91598 -26.67474 -24.13270 -22.08688 -21.20743 -20.93078 -20.00555 -19.08903 -18.28922 -18.03492 -17.47105 -17.27233 -16.72367 -16.47961 -16.09111 -15.77464 -15.52991 -15.22477 -14.87373 -14.56842 -14.43756 -14.21960 -13.84051 -13.66910 -13.53720 -13.31797 -13.19671 -13.02740 -12.85174 -12.57252 -12.49403 -12.23974 -11.92887 -11.74167 -11.72704 -10.95726 -10.82858 -10.63462 -10.29140 -10.18163 -9.49201 -9.46344 -8.33495 -6.38388 0.79885 1.28060 1.34081 1.37349 1.45070 1.45621 1.74073 1.82927 2.10987 2.31303 2.91931 3.01258 3.53704 3.68259 3.77403 4.03159 4.14848 4.16967 4.22481 4.31756 4.33126 4.37996 4.46149 4.50274 4.67740 4.71200 4.77779 4.80272 4.88200 4.94088 5.11038 5.18092 5.46178 5.51354 5.68549 5.75942 5.91346 5.95574 6.10403 6.25220 6.63030 6.65513 6.67421 7.22011 7.40074 8.83325 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.017970 B = 0.003486 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.815341 B = 8029.469544 C = 9096.551281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.183 4.183 3 C 0.128 3.872 4 N -0.593 5.593 5 C 0.229 3.771 6 C -0.536 4.536 7 H 0.031 0.969 8 C 0.012 3.988 9 N -0.944 5.944 10 Si 0.944 3.056 11 H -0.278 1.278 12 H -0.274 1.274 13 H -0.237 1.237 14 C 0.495 3.505 15 O -0.582 6.582 16 C 0.060 3.940 17 O -0.387 6.387 18 C 0.128 3.872 19 C 0.074 3.926 20 C -0.277 4.277 21 C 0.040 3.960 22 N -0.323 5.323 23 N -0.371 5.371 24 C 0.086 3.914 25 H 0.117 0.883 26 H 0.098 0.902 27 H 0.121 0.879 28 H 0.078 0.922 29 H 0.110 0.890 30 H 0.050 0.950 31 H 0.015 0.985 32 H 0.268 0.732 33 H 0.108 0.892 34 H 0.121 0.879 35 H 0.097 0.903 36 H 0.105 0.895 37 H 0.133 0.867 38 H 0.205 0.795 39 H 0.089 0.911 40 H 0.097 0.903 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.685 -17.349 -17.821 24.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.202 4.202 3 C 0.006 3.994 4 N -0.325 5.325 5 C 0.106 3.894 6 C -0.575 4.575 7 H 0.050 0.950 8 C -0.186 4.186 9 N -0.585 5.585 10 Si 0.767 3.233 11 H -0.204 1.204 12 H -0.199 1.199 13 H -0.160 1.160 14 C 0.283 3.717 15 O -0.462 6.462 16 C -0.019 4.019 17 O -0.305 6.305 18 C 0.050 3.950 19 C -0.054 4.054 20 C -0.306 4.306 21 C -0.144 4.144 22 N -0.145 5.145 23 N -0.156 5.156 24 C -0.053 4.053 25 H 0.135 0.865 26 H 0.116 0.884 27 H 0.139 0.861 28 H 0.097 0.903 29 H 0.128 0.872 30 H 0.068 0.932 31 H 0.033 0.967 32 H 0.077 0.923 33 H 0.126 0.874 34 H 0.138 0.862 35 H 0.115 0.885 36 H 0.122 0.878 37 H 0.151 0.849 38 H 0.222 0.778 39 H 0.107 0.893 40 H 0.115 0.885 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 1.874 -17.711 -18.132 25.415 hybrid contribution -0.536 0.857 1.636 1.923 sum 1.337 -16.854 -16.495 23.621 Atomic orbital electron populations 1.24085 0.95624 1.02927 0.98018 1.23320 0.96719 0.98091 1.02098 1.20947 0.92822 0.96786 0.88817 1.47916 1.11449 1.59975 1.13130 1.19275 0.95452 0.92052 0.82579 1.21571 1.40479 0.93471 1.01942 0.95026 1.25822 0.95992 0.95351 1.01455 1.70041 1.49400 1.08484 1.30533 0.85766 0.79074 0.79450 0.78989 1.20423 1.19912 1.16005 1.21069 0.81654 0.78083 0.90857 1.90677 1.53802 1.57517 1.44174 1.22355 0.83909 1.01777 0.93873 1.87996 1.26588 1.82055 1.33904 1.20878 0.87150 0.99851 0.87115 1.20880 0.94747 0.99177 0.90576 1.21438 0.95376 1.13543 1.00282 1.24253 0.98271 0.97678 0.94222 1.77276 1.01768 1.25837 1.09652 1.48715 1.07670 1.48002 1.11222 1.22305 1.03868 1.03841 0.75288 0.86472 0.88392 0.86067 0.90318 0.87195 0.93201 0.96671 0.92276 0.87408 0.86166 0.88538 0.87759 0.84872 0.77845 0.89291 0.88466 0.86626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.12 14.32 67.78 0.97 -2.15 16 2 C -0.18 -3.80 9.74 25.64 0.25 -3.55 16 3 C 0.13 3.41 5.65 85.63 0.48 3.90 16 4 N -0.59 -23.09 2.44 -830.51 -2.03 -25.12 16 5 C 0.23 11.07 4.23 85.63 0.36 11.43 16 6 C -0.54 -31.48 9.94 25.60 0.25 -31.22 16 7 H 0.03 2.06 8.06 -2.91 -0.02 2.04 16 8 C 0.01 0.70 5.47 84.66 0.46 1.17 16 9 N -0.94 -59.89 13.96 21.45 0.30 -59.59 16 10 Si 0.94 44.66 27.47 68.60 1.88 46.54 16 11 H -0.28 -13.37 7.11 99.48 0.71 -12.67 16 12 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 13 H -0.24 -10.01 6.54 99.48 0.65 -9.36 16 14 C 0.49 19.77 7.75 87.66 0.68 20.45 16 15 O -0.58 -30.55 16.08 16.00 0.26 -30.29 16 16 C 0.06 1.50 4.97 71.24 0.35 1.85 16 17 O -0.39 -11.25 9.17 -129.94 -1.19 -12.44 16 18 C 0.13 2.35 5.90 71.24 0.42 2.77 16 19 C 0.07 1.81 6.91 41.41 0.29 2.10 16 20 C -0.28 -8.14 10.14 21.99 0.22 -7.92 16 21 C 0.04 1.05 12.03 85.24 1.02 2.07 16 22 N -0.32 -8.54 12.58 -57.03 -0.72 -9.26 16 23 N -0.37 -8.00 4.01 -356.02 -1.43 -9.43 16 24 C 0.09 0.87 11.27 127.77 1.44 2.31 16 25 H 0.12 1.68 8.06 -2.91 -0.02 1.66 16 26 H 0.10 1.86 7.84 -2.91 -0.02 1.84 16 27 H 0.12 2.15 7.83 -2.91 -0.02 2.12 16 28 H 0.08 2.31 7.72 -2.39 -0.02 2.29 16 29 H 0.11 2.13 6.44 -2.39 -0.02 2.11 16 30 H 0.05 2.22 7.13 -2.39 -0.02 2.20 16 31 H 0.02 0.80 6.85 -2.39 -0.02 0.79 16 32 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 33 H 0.11 2.06 7.40 -2.38 -0.02 2.04 16 34 H 0.12 1.93 7.77 -2.38 -0.02 1.92 16 35 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.13 4.49 7.85 -2.91 -0.02 4.46 16 38 H 0.20 4.00 8.06 -2.91 -0.02 3.98 16 39 H 0.09 0.67 8.14 -2.39 -0.02 0.66 16 40 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.12 0.44 7.79 -2.39 -0.02 0.43 16 Total: -1.00 -88.54 354.45 5.25 -83.29 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: 0.96 Total: 13.08 kcal Atomic # 6 Polarization: -4.00 SS G_CDS: 7.21 Total: 3.21 kcal Atomic # 7 Polarization: -99.52 SS G_CDS: -3.87 Total: -103.39 kcal Atomic # 8 Polarization: -41.79 SS G_CDS: -0.93 Total: -42.73 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 1.88 Total: 46.54 kcal Total: -88.54 5.25 -83.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292591904.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.049 kcal (2) G-P(sol) polarization free energy of solvation -88.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds