Wall clock time and date at job start Tue Mar 31 2020 02:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46506 * 109.47034 * 2 1 4 4 C 1.46497 * 120.00181 * 89.89690 * 3 2 1 5 5 C 1.50704 * 109.46875 * 89.99899 * 4 3 2 6 6 H 1.07996 * 120.00029 * 0.02562 * 5 4 3 7 7 C 1.37885 * 119.99875 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99782 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99876 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47054 * 60.00265 * 9 7 5 11 11 H 1.48503 * 109.46910 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47277 * 300.00030 * 9 7 5 13 13 C 1.34771 * 119.99853 * 269.89775 * 3 2 1 14 14 O 1.21613 * 120.00255 * 185.40543 * 13 3 2 15 15 C 1.47414 * 120.00344 * 5.40631 * 13 3 2 16 16 C 1.39314 * 121.30096 * 280.71355 * 15 13 3 17 17 C 1.50701 * 120.98978 * 0.02562 * 16 15 13 18 18 C 1.40036 * 118.01985 * 179.80859 * 16 15 13 19 19 C 1.50705 * 119.70207 * 180.19242 * 18 16 15 20 20 N 1.30521 * 120.59422 * 0.47418 * 18 16 15 21 21 N 1.28270 * 122.98480 * 359.73978 * 20 18 16 22 22 C 1.46492 * 119.03346 * 180.02562 * 21 20 18 23 23 C 1.34686 * 121.93486 * 0.03124 * 21 20 18 24 24 O 1.21907 * 120.46814 * 179.97438 * 23 21 20 25 25 H 1.09004 * 109.46924 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47386 * 300.00049 * 1 2 3 27 27 H 1.09003 * 109.46978 * 60.00528 * 1 2 3 28 28 H 1.09003 * 109.47818 * 239.99902 * 2 1 3 29 29 H 1.09005 * 109.47464 * 119.99620 * 2 1 3 30 30 H 1.08993 * 109.47679 * 209.99864 * 4 3 2 31 31 H 1.08998 * 109.47095 * 330.00504 * 4 3 2 32 32 H 0.96996 * 119.99464 * 179.97438 * 8 7 5 33 33 H 1.08997 * 109.47127 * 85.73616 * 17 16 15 34 34 H 1.09001 * 109.47258 * 205.74173 * 17 16 15 35 35 H 1.09007 * 109.47311 * 325.73809 * 17 16 15 36 36 H 1.09004 * 109.46813 * 180.27241 * 19 18 16 37 37 H 1.08997 * 109.47255 * 300.27387 * 19 18 16 38 38 H 1.09002 * 109.46799 * 60.27861 * 19 18 16 39 39 H 1.09000 * 109.46788 * 270.02388 * 22 21 20 40 40 H 1.08998 * 109.47328 * 30.01915 * 22 21 20 41 41 H 1.09000 * 109.47648 * 150.02561 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2603 2.0727 1.2687 5 6 3.6829 1.8361 1.7062 6 1 4.3410 1.2316 1.0997 7 6 4.1446 2.3923 2.8804 8 7 3.3433 3.1289 3.6187 9 14 5.9081 2.0997 3.4224 10 1 6.8369 2.6223 2.3884 11 1 6.1534 2.8005 4.7085 12 1 6.1357 0.6432 3.6016 13 6 2.2449 2.0159 -1.1672 14 8 2.7424 3.1256 -1.1694 15 6 1.8896 1.3650 -2.4412 16 6 2.7075 0.3905 -3.0089 17 6 3.9883 -0.0345 -2.3382 18 6 2.3017 -0.1856 -4.2190 19 6 3.1556 -1.2466 -4.8644 20 7 1.1933 0.1918 -4.7958 21 7 0.4199 1.0886 -4.3029 22 6 -0.8044 1.4457 -5.0236 23 6 0.7005 1.7117 -3.1423 24 8 -0.0535 2.5606 -2.6984 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 2.0936 3.1418 1.1375 31 1 1.5783 1.6890 2.0274 32 1 3.6680 3.5198 4.4449 33 1 3.7743 -0.8139 -1.6070 34 1 4.6805 -0.4191 -3.0872 35 1 4.4368 0.8223 -1.8351 36 1 2.6888 -1.5730 -5.7938 37 1 4.1433 -0.8380 -5.0777 38 1 3.2520 -2.0962 -4.1883 39 1 -0.5936 2.2601 -5.7167 40 1 -1.1646 0.5799 -5.5793 41 1 -1.5661 1.7629 -4.3113 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330535070.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:58:20 Heat of formation + Delta-G solvation = -33.768242 kcal Electronic energy + Delta-G solvation = -24732.321649 eV Core-core repulsion = 21226.849566 eV Total energy + Delta-G solvation = -3505.472083 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.27350 -40.74156 -39.20910 -37.11177 -36.99273 -34.91164 -33.49264 -31.76024 -31.58138 -29.39057 -29.03078 -27.34487 -26.01984 -24.74383 -23.89958 -23.34465 -20.80792 -19.46848 -18.77163 -18.44723 -18.07653 -17.60425 -17.31378 -16.90642 -16.30829 -15.70000 -15.12736 -15.07157 -14.86407 -14.72822 -14.51887 -14.38319 -13.99523 -13.85548 -13.78360 -13.55372 -13.48806 -13.33935 -13.16419 -12.86832 -12.78795 -12.70357 -12.57286 -12.34379 -12.19460 -12.01873 -11.76024 -11.33995 -10.93800 -10.70566 -10.63258 -9.62248 -9.52262 -8.21447 -6.36935 -0.86247 0.43430 0.99432 1.38704 1.44412 1.51216 1.62094 2.01593 2.22759 2.42745 2.93016 3.08516 3.25752 3.35927 3.66317 3.93871 4.04127 4.24346 4.28453 4.32987 4.34629 4.45027 4.46852 4.60632 4.64602 4.74134 4.79039 4.80043 4.84950 4.94458 4.97216 5.07096 5.11451 5.14871 5.22159 5.45775 5.53031 5.77446 6.02616 6.40195 6.55769 6.70940 7.00090 7.16561 7.35606 8.86804 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.020926 B = 0.005037 C = 0.004563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.733204 B = 5557.700759 C = 6134.953636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.102 3.898 3 N -0.585 5.585 4 C 0.263 3.737 5 C -0.538 4.538 6 H 0.064 0.936 7 C 0.005 3.995 8 N -0.933 5.933 9 Si 0.974 3.026 10 H -0.276 1.276 11 H -0.282 1.282 12 H -0.253 1.253 13 C 0.574 3.426 14 O -0.589 6.589 15 C -0.236 4.236 16 C 0.026 3.974 17 C -0.134 4.134 18 C 0.071 3.929 19 C -0.086 4.086 20 N -0.211 5.211 21 N -0.341 5.341 22 C 0.076 3.924 23 C 0.488 3.512 24 O -0.572 6.572 25 H 0.102 0.898 26 H 0.043 0.957 27 H 0.031 0.969 28 H 0.092 0.908 29 H 0.093 0.907 30 H -0.013 1.013 31 H 0.026 0.974 32 H 0.267 0.733 33 H 0.113 0.887 34 H 0.134 0.866 35 H 0.049 0.951 36 H 0.095 0.905 37 H 0.104 0.896 38 H 0.111 0.889 39 H 0.091 0.909 40 H 0.130 0.870 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.241 -17.220 -19.402 26.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.020 4.020 3 N -0.315 5.315 4 C 0.142 3.858 5 C -0.577 4.577 6 H 0.082 0.918 7 C -0.194 4.194 8 N -0.572 5.572 9 Si 0.797 3.203 10 H -0.202 1.202 11 H -0.208 1.208 12 H -0.177 1.177 13 C 0.361 3.639 14 O -0.469 6.469 15 C -0.251 4.251 16 C 0.018 3.982 17 C -0.190 4.190 18 C -0.098 4.098 19 C -0.144 4.144 20 N -0.036 5.036 21 N -0.160 5.160 22 C -0.063 4.063 23 C 0.287 3.713 24 O -0.453 6.453 25 H 0.120 0.880 26 H 0.062 0.938 27 H 0.050 0.950 28 H 0.110 0.890 29 H 0.111 0.889 30 H 0.005 0.995 31 H 0.044 0.956 32 H 0.076 0.924 33 H 0.132 0.868 34 H 0.152 0.848 35 H 0.068 0.932 36 H 0.114 0.886 37 H 0.122 0.878 38 H 0.129 0.871 39 H 0.109 0.891 40 H 0.149 0.851 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.073 -16.176 -19.705 25.679 hybrid contribution 0.642 1.409 1.625 2.244 sum -2.431 -14.768 -18.079 23.470 Atomic orbital electron populations 1.22136 0.95635 1.03329 1.00743 1.21792 0.94661 0.81380 1.04196 1.48157 1.62615 1.15038 1.05666 1.18813 0.96425 0.90952 0.79622 1.21618 0.97139 1.32319 1.06588 0.91756 1.25959 1.02777 0.94296 0.96358 1.70081 1.38115 1.34160 1.14867 0.85377 0.78377 0.79346 0.77167 1.20159 1.20774 1.17689 1.17819 0.77687 0.84540 0.83871 1.90735 1.46159 1.22357 1.87697 1.21325 0.99393 1.04870 0.99558 1.21867 0.95292 0.87917 0.93078 1.21277 0.92265 1.02838 1.02644 1.22442 0.93422 1.01177 0.92793 1.20860 0.97619 0.93968 1.01976 1.70778 1.03714 1.03374 1.25736 1.46707 1.21509 1.29473 1.18350 1.22433 0.81934 1.04501 0.97431 1.17733 0.87280 0.83673 0.82606 1.90929 1.51958 1.34362 1.68101 0.87970 0.93781 0.95006 0.88957 0.88860 0.99486 0.95580 0.92444 0.86849 0.84768 0.93202 0.88588 0.87805 0.87058 0.89050 0.85123 0.89364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.06 10.24 71.98 0.74 -4.33 16 2 C 0.10 3.47 5.89 86.38 0.51 3.98 16 3 N -0.59 -27.58 2.46 -830.05 -2.04 -29.62 16 4 C 0.26 15.12 5.12 85.63 0.44 15.56 16 5 C -0.54 -31.34 9.39 25.60 0.24 -31.10 16 6 H 0.06 3.57 7.81 -2.91 -0.02 3.55 16 7 C 0.00 0.28 5.46 84.66 0.46 0.74 16 8 N -0.93 -57.90 13.29 21.45 0.28 -57.61 16 9 Si 0.97 44.68 29.54 68.60 2.03 46.70 16 10 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 11 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 12 H -0.25 -10.58 7.11 99.48 0.71 -9.87 16 13 C 0.57 28.28 5.53 86.66 0.48 28.76 16 14 O -0.59 -35.74 16.74 -4.07 -0.07 -35.81 16 15 C -0.24 -8.95 4.31 -19.59 -0.08 -9.03 16 16 C 0.03 0.66 4.97 -19.17 -0.10 0.57 16 17 C -0.13 -2.83 8.97 71.24 0.64 -2.19 16 18 C 0.07 1.32 6.87 43.19 0.30 1.62 16 19 C -0.09 -0.61 8.97 71.24 0.64 0.03 16 20 N -0.21 -4.51 10.74 -47.43 -0.51 -5.02 16 21 N -0.34 -9.18 3.62 -493.01 -1.78 -10.97 16 22 C 0.08 1.41 10.58 127.77 1.35 2.76 16 23 C 0.49 18.43 6.91 85.27 0.59 19.02 16 24 O -0.57 -26.56 16.18 -5.01 -0.08 -26.64 16 25 H 0.10 2.32 8.14 -2.38 -0.02 2.30 16 26 H 0.04 1.54 8.14 -2.39 -0.02 1.53 16 27 H 0.03 1.11 7.39 -2.39 -0.02 1.09 16 28 H 0.09 2.53 4.69 -2.39 -0.01 2.51 16 29 H 0.09 3.06 8.07 -2.38 -0.02 3.04 16 30 H -0.01 -0.88 7.50 -2.39 -0.02 -0.90 16 31 H 0.03 1.52 8.07 -2.39 -0.02 1.50 16 32 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 33 H 0.11 2.02 7.14 -2.39 -0.02 2.00 16 34 H 0.13 1.49 6.64 -2.39 -0.02 1.48 16 35 H 0.05 1.52 7.39 -2.38 -0.02 1.50 16 36 H 0.10 0.49 8.11 -2.39 -0.02 0.47 16 37 H 0.10 0.43 7.56 -2.39 -0.02 0.41 16 38 H 0.11 0.31 8.14 -2.39 -0.02 0.30 16 39 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.13 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.09 1.87 7.36 -2.39 -0.02 1.85 16 Total: -1.00 -91.11 343.83 5.07 -86.04 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: 1.04 Total: 6.53 kcal Atomic # 6 Polarization: 20.20 SS G_CDS: 6.20 Total: 26.40 kcal Atomic # 7 Polarization: -99.17 SS G_CDS: -4.05 Total: -103.22 kcal Atomic # 8 Polarization: -62.30 SS G_CDS: -0.15 Total: -62.45 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.70 kcal Total: -91.11 5.07 -86.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330535070.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.268 kcal (2) G-P(sol) polarization free energy of solvation -91.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds