Wall clock time and date at job start Tue Mar 31 2020 03:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86807 * 119.99885 * 2 1 4 4 H 1.48493 * 109.47034 * 240.00583 * 3 2 1 5 5 H 1.48507 * 109.46987 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.46956 * 120.00505 * 3 2 1 7 7 C 1.38949 * 120.00376 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00522 * 179.97438 * 7 2 1 9 9 N 1.37096 * 119.99651 * 359.97438 * 7 2 1 10 10 C 1.34780 * 120.00065 * 180.02562 * 9 7 2 11 11 O 1.21292 * 119.99627 * 359.97438 * 10 9 7 12 12 C 1.50703 * 120.00199 * 179.97438 * 10 9 7 13 13 N 1.46900 * 109.47055 * 180.02562 * 12 10 9 14 14 C 1.46850 * 110.99580 * 293.95245 * 13 12 10 15 15 C 1.53040 * 109.51828 * 185.84263 * 14 13 12 16 16 C 1.53122 * 109.27553 * 300.82026 * 15 14 13 17 17 C 1.53118 * 109.16402 * 57.65947 * 16 15 14 18 18 H 1.08997 * 109.50470 * 62.32243 * 17 16 15 19 19 C 1.52998 * 109.50555 * 182.40411 * 17 16 15 20 20 N 1.46499 * 109.46792 * 294.92020 * 19 17 16 21 21 C 1.34432 * 126.82005 * 124.71108 * 20 19 17 22 22 N 1.30839 * 108.07342 * 180.25815 * 21 20 19 23 23 C 1.33236 * 109.82829 * 0.02562 * 22 21 20 24 24 N 1.30707 * 108.95130 * 359.97438 * 23 22 21 25 25 C 1.46850 * 110.99582 * 58.20585 * 13 12 10 26 26 H 0.96994 * 119.99694 * 359.97438 * 1 2 3 27 27 H 0.97003 * 120.00523 * 359.97438 * 9 7 2 28 28 H 1.08994 * 109.46959 * 59.99670 * 12 10 9 29 29 H 1.09004 * 109.46624 * 300.00019 * 12 10 9 30 30 H 1.08994 * 109.46300 * 65.82615 * 14 13 12 31 31 H 1.08996 * 109.46209 * 305.85470 * 14 13 12 32 32 H 1.09000 * 109.49925 * 180.88259 * 15 14 13 33 33 H 1.08995 * 109.50597 * 60.75979 * 15 14 13 34 34 H 1.09001 * 109.52246 * 297.74512 * 16 15 14 35 35 H 1.09001 * 109.57231 * 177.59713 * 16 15 14 36 36 H 1.09000 * 109.47176 * 174.91786 * 19 17 16 37 37 H 1.09001 * 109.47112 * 54.91551 * 19 17 16 38 38 H 1.08001 * 125.96524 * 0.28063 * 21 20 19 39 39 H 1.08005 * 125.52460 * 179.97438 * 23 22 21 40 40 H 1.08991 * 109.49960 * 54.16038 * 25 13 12 41 41 H 1.09007 * 109.42632 * 294.18985 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2831 2.7465 0.0006 6 1 3.1020 1.6964 1.2124 7 6 2.0090 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3235 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2103 -3.5577 -0.0010 12 6 1.2439 -4.8629 0.0000 13 7 2.1986 -5.9795 0.0005 14 6 2.9636 -6.0182 -1.2524 15 6 3.8399 -7.2726 -1.2778 16 6 4.7908 -7.2494 -0.0778 17 6 3.9704 -7.1601 1.2119 18 1 3.3410 -8.0452 1.3050 19 6 4.9143 -7.0759 2.4130 20 7 5.6743 -8.3234 2.5251 21 6 7.0120 -8.4513 2.5607 22 7 7.2955 -9.7248 2.6600 23 6 6.1700 -10.4373 2.6899 24 7 5.1502 -9.6236 2.6102 25 6 3.0895 -5.9094 1.1658 26 1 -0.4849 0.8400 0.0004 27 1 0.3535 -2.3907 0.0002 28 1 0.6169 -4.9208 -0.8896 29 1 0.6176 -4.9204 0.8903 30 1 3.5952 -5.1325 -1.3198 31 1 2.2755 -6.0387 -2.0975 32 1 4.4192 -7.2931 -2.2009 33 1 3.2080 -8.1591 -1.2243 34 1 5.4492 -6.3838 -0.1515 35 1 5.3878 -8.1612 -0.0674 36 1 4.3329 -6.9218 3.3220 37 1 5.6029 -6.2421 2.2763 38 1 7.7279 -7.6439 2.5156 39 1 6.1101 -11.5129 2.7674 40 1 2.4935 -5.8512 2.0765 41 1 3.7201 -5.0238 1.0873 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330667631.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:21:40 Heat of formation + Delta-G solvation = 55.742535 kcal Electronic energy + Delta-G solvation = -23663.501974 eV Core-core repulsion = 20194.204120 eV Total energy + Delta-G solvation = -3469.297854 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.13838 -39.59593 -37.62267 -35.03830 -33.96345 -32.57363 -31.35751 -31.29497 -30.93524 -27.42731 -26.40376 -24.73074 -22.79845 -22.63496 -22.07567 -21.10618 -19.56172 -19.24947 -17.95575 -17.31790 -16.08070 -15.99494 -15.49281 -15.08052 -14.67443 -14.67086 -14.38019 -14.27323 -14.12000 -13.85415 -13.54088 -13.26705 -12.81527 -12.50866 -12.11919 -11.94432 -11.72464 -11.55622 -11.29061 -11.18034 -10.67731 -10.61359 -10.52304 -10.41783 -10.33337 -10.20046 -10.04681 -9.87011 -9.65389 -9.52871 -9.26511 -8.07392 -7.45366 -6.52207 -3.94047 1.56286 2.23699 2.87587 3.10747 3.18525 3.22013 3.75017 4.07951 4.13276 4.21624 4.45170 4.71669 4.78620 4.89174 4.97540 5.07316 5.14798 5.26253 5.33019 5.39128 5.50816 5.72455 5.77763 5.84105 5.93917 5.99069 6.06418 6.10217 6.13928 6.18561 6.28213 6.33149 6.35359 6.53796 6.66424 6.75113 7.33236 7.42451 7.43938 7.93541 7.98759 8.48296 9.05533 9.41843 9.91932 10.64094 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.026646 B = 0.003223 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.568565 B = 8685.434319 C = 9168.755864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.025 3.975 3 Si 0.930 3.070 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.304 4.304 8 H 0.102 0.898 9 N -0.555 5.555 10 C 0.405 3.595 11 O -0.596 6.596 12 C 0.042 3.958 13 N -0.512 5.512 14 C 0.042 3.958 15 C -0.109 4.109 16 C -0.109 4.109 17 C -0.091 4.091 18 H 0.087 0.913 19 C 0.131 3.869 20 N -0.367 5.367 21 C 0.250 3.750 22 N -0.553 5.553 23 C 0.189 3.811 24 N -0.314 5.314 25 C 0.041 3.959 26 H 0.274 0.726 27 H 0.393 0.607 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.051 0.949 36 H 0.091 0.909 37 H 0.104 0.896 38 H 0.216 0.784 39 H 0.213 0.787 40 H 0.064 0.936 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.745 -13.717 2.687 15.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.177 4.177 3 Si 0.757 3.243 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.434 4.434 8 H 0.120 0.880 9 N -0.189 5.189 10 C 0.191 3.809 11 O -0.483 6.483 12 C -0.090 4.090 13 N -0.234 5.234 14 C -0.086 4.086 15 C -0.147 4.147 16 C -0.147 4.147 17 C -0.110 4.110 18 H 0.105 0.895 19 C 0.009 3.991 20 N -0.157 5.157 21 C -0.046 4.046 22 N -0.281 5.281 23 C -0.114 4.114 24 N -0.142 5.142 25 C -0.087 4.087 26 H 0.084 0.916 27 H 0.227 0.773 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.070 0.930 36 H 0.109 0.891 37 H 0.122 0.878 38 H 0.233 0.767 39 H 0.230 0.770 40 H 0.082 0.918 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 6.648 -14.269 2.733 15.977 hybrid contribution 0.211 1.905 -0.076 1.918 sum 6.859 -12.364 2.656 14.386 Atomic orbital electron populations 1.69600 1.05987 1.28500 1.49692 1.25298 0.95622 0.99856 0.96966 0.85924 0.78827 0.80429 0.79090 1.19861 1.20866 1.19859 1.19655 0.93339 0.82394 1.48036 0.88008 1.42066 1.09353 1.04946 1.62574 1.21099 0.88806 0.85949 0.85026 1.90368 1.13933 1.86861 1.57186 1.22044 0.95415 0.88056 1.03517 1.62354 1.18072 1.40285 1.02738 1.22222 0.96665 0.98204 0.91506 1.21491 0.97362 0.98581 0.97299 1.21547 0.97646 1.01024 0.94489 1.21425 0.96082 1.00714 0.92796 0.89506 1.21984 0.95650 0.80688 1.00746 1.50588 1.05899 1.06683 1.52531 1.26050 0.85302 0.96349 0.96942 1.70522 1.30292 1.02043 1.25205 1.25961 0.85212 1.01122 0.99102 1.78046 1.23160 0.87827 1.25151 1.22328 0.95768 0.97414 0.93206 0.91632 0.77339 0.89325 0.89294 0.91358 0.91795 0.92001 0.91851 0.91890 0.93018 0.89081 0.87792 0.76746 0.77016 0.91752 0.89325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.69 13.05 55.50 0.72 -22.97 16 2 C 0.03 0.65 5.50 -17.47 -0.10 0.55 16 3 Si 0.93 20.34 29.55 -169.99 -5.02 15.32 16 4 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 7 C -0.30 -8.11 9.68 -14.93 -0.14 -8.26 16 8 H 0.10 2.83 7.16 -52.49 -0.38 2.46 16 9 N -0.55 -13.33 5.29 -10.96 -0.06 -13.39 16 10 C 0.41 8.80 7.20 -10.98 -0.08 8.72 16 11 O -0.60 -14.25 11.20 5.55 0.06 -14.19 16 12 C 0.04 0.70 5.86 -4.97 -0.03 0.67 16 13 N -0.51 -8.14 4.86 -236.11 -1.15 -9.28 16 14 C 0.04 0.66 5.10 -3.83 -0.02 0.64 16 15 C -0.11 -1.45 6.09 -26.65 -0.16 -1.62 16 16 C -0.11 -1.39 5.14 -26.61 -0.14 -1.53 16 17 C -0.09 -1.14 2.45 -90.54 -0.22 -1.36 16 18 H 0.09 1.22 8.10 -51.93 -0.42 0.80 16 19 C 0.13 1.37 5.94 -4.04 -0.02 1.35 16 20 N -0.37 -4.13 3.20 -62.63 -0.20 -4.33 16 21 C 0.25 2.54 12.63 -90.65 -1.14 1.40 16 22 N -0.55 -6.60 11.19 -15.83 -0.18 -6.78 16 23 C 0.19 2.14 13.03 -91.82 -1.20 0.94 16 24 N -0.31 -4.01 12.53 29.29 0.37 -3.64 16 25 C 0.04 0.62 4.26 -3.83 -0.02 0.60 16 26 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 27 H 0.39 9.14 7.90 -40.82 -0.32 8.82 16 28 H 0.09 1.38 8.06 -51.93 -0.42 0.97 16 29 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 30 H 0.07 1.29 6.00 -51.93 -0.31 0.97 16 31 H 0.06 0.96 8.06 -51.93 -0.42 0.54 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.05 0.66 7.83 -51.93 -0.41 0.26 16 36 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.10 0.91 8.09 -51.93 -0.42 0.49 16 38 H 0.22 1.31 8.06 -52.49 -0.42 0.89 16 39 H 0.21 1.63 8.06 -52.48 -0.42 1.21 16 40 H 0.06 0.94 8.12 -51.93 -0.42 0.51 16 41 H 0.09 1.59 5.36 -51.92 -0.28 1.31 16 LS Contribution 334.87 15.07 5.05 5.05 Total: -1.00 -30.94 334.87 -9.56 -40.50 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: -5.89 Total: 11.61 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: -3.27 Total: 2.11 kcal Atomic # 7 Polarization: -59.90 SS G_CDS: -0.49 Total: -60.39 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: 0.06 Total: -14.19 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.94 -9.56 -40.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330667631.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.245 kcal (2) G-P(sol) polarization free energy of solvation -30.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds