Wall clock time and date at job start Tue Mar 31 2020 03:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86807 * 119.99885 * 2 1 4 4 H 1.48493 * 109.47034 * 240.00583 * 3 2 1 5 5 H 1.48507 * 109.46987 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.46956 * 120.00505 * 3 2 1 7 7 C 1.38949 * 120.00376 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00522 * 179.97438 * 7 2 1 9 9 N 1.37096 * 119.99651 * 359.97438 * 7 2 1 10 10 C 1.34780 * 120.00065 * 180.02562 * 9 7 2 11 11 O 1.21292 * 119.99627 * 359.97438 * 10 9 7 12 12 C 1.50703 * 120.00199 * 179.97438 * 10 9 7 13 13 N 1.46900 * 109.47055 * 180.02562 * 12 10 9 14 14 C 1.46850 * 110.99580 * 293.95245 * 13 12 10 15 15 C 1.53040 * 109.51828 * 185.84263 * 14 13 12 16 16 C 1.53122 * 109.27553 * 300.82026 * 15 14 13 17 17 C 1.53118 * 109.16402 * 57.65947 * 16 15 14 18 18 H 1.08997 * 109.50470 * 62.32243 * 17 16 15 19 19 C 1.52998 * 109.50555 * 182.40411 * 17 16 15 20 20 N 1.46499 * 109.46792 * 294.92020 * 19 17 16 21 21 C 1.34432 * 126.82005 * 124.71108 * 20 19 17 22 22 N 1.30839 * 108.07342 * 180.25815 * 21 20 19 23 23 C 1.33236 * 109.82829 * 0.02562 * 22 21 20 24 24 N 1.30707 * 108.95130 * 359.97438 * 23 22 21 25 25 C 1.46850 * 110.99582 * 58.20585 * 13 12 10 26 26 H 0.96994 * 119.99694 * 359.97438 * 1 2 3 27 27 H 0.97003 * 120.00523 * 359.97438 * 9 7 2 28 28 H 1.08994 * 109.46959 * 59.99670 * 12 10 9 29 29 H 1.09004 * 109.46624 * 300.00019 * 12 10 9 30 30 H 1.08994 * 109.46300 * 65.82615 * 14 13 12 31 31 H 1.08996 * 109.46209 * 305.85470 * 14 13 12 32 32 H 1.09000 * 109.49925 * 180.88259 * 15 14 13 33 33 H 1.08995 * 109.50597 * 60.75979 * 15 14 13 34 34 H 1.09001 * 109.52246 * 297.74512 * 16 15 14 35 35 H 1.09001 * 109.57231 * 177.59713 * 16 15 14 36 36 H 1.09000 * 109.47176 * 174.91786 * 19 17 16 37 37 H 1.09001 * 109.47112 * 54.91551 * 19 17 16 38 38 H 1.08001 * 125.96524 * 0.28063 * 21 20 19 39 39 H 1.08005 * 125.52460 * 179.97438 * 23 22 21 40 40 H 1.08991 * 109.49960 * 54.16038 * 25 13 12 41 41 H 1.09007 * 109.42632 * 294.18985 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2831 2.7465 0.0006 6 1 3.1020 1.6964 1.2124 7 6 2.0090 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3235 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2103 -3.5577 -0.0010 12 6 1.2439 -4.8629 0.0000 13 7 2.1986 -5.9795 0.0005 14 6 2.9636 -6.0182 -1.2524 15 6 3.8399 -7.2726 -1.2778 16 6 4.7908 -7.2494 -0.0778 17 6 3.9704 -7.1601 1.2119 18 1 3.3410 -8.0452 1.3050 19 6 4.9143 -7.0759 2.4130 20 7 5.6743 -8.3234 2.5251 21 6 7.0120 -8.4513 2.5607 22 7 7.2955 -9.7248 2.6600 23 6 6.1700 -10.4373 2.6899 24 7 5.1502 -9.6236 2.6102 25 6 3.0895 -5.9094 1.1658 26 1 -0.4849 0.8400 0.0004 27 1 0.3535 -2.3907 0.0002 28 1 0.6169 -4.9208 -0.8896 29 1 0.6176 -4.9204 0.8903 30 1 3.5952 -5.1325 -1.3198 31 1 2.2755 -6.0387 -2.0975 32 1 4.4192 -7.2931 -2.2009 33 1 3.2080 -8.1591 -1.2243 34 1 5.4492 -6.3838 -0.1515 35 1 5.3878 -8.1612 -0.0674 36 1 4.3329 -6.9218 3.3220 37 1 5.6029 -6.2421 2.2763 38 1 7.7279 -7.6439 2.5156 39 1 6.1101 -11.5129 2.7674 40 1 2.4935 -5.8512 2.0765 41 1 3.7201 -5.0238 1.0873 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330667631.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:21:39 Heat of formation + Delta-G solvation = 36.356392 kcal Electronic energy + Delta-G solvation = -23664.342620 eV Core-core repulsion = 20194.204120 eV Total energy + Delta-G solvation = -3470.138500 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.96452 -41.05160 -39.10421 -36.32675 -35.62209 -33.77483 -33.24970 -32.16518 -31.96316 -28.92086 -27.38063 -26.49963 -24.08614 -23.65236 -22.87655 -22.15686 -21.04773 -20.63147 -19.81108 -18.19727 -17.75097 -17.03622 -16.72552 -16.38015 -16.17231 -15.79058 -15.71356 -15.64603 -15.20069 -15.08407 -14.99786 -14.44762 -14.03983 -13.60468 -13.48559 -13.32566 -13.15566 -12.99801 -12.63538 -12.51568 -12.44984 -12.15060 -11.97804 -11.70763 -11.57016 -11.35145 -11.30061 -10.93993 -10.92635 -10.73708 -10.52325 -9.99442 -8.98079 -8.46193 -5.96260 0.75324 1.37407 1.40656 1.42997 1.50858 2.01412 2.05947 2.28189 2.95102 3.19875 3.26122 3.51454 3.55934 3.73707 3.81384 4.01321 4.13889 4.24570 4.29628 4.37106 4.42053 4.47540 4.53931 4.59988 4.66827 4.73734 4.86153 4.94634 4.99860 5.06428 5.17136 5.26311 5.34546 5.38931 5.48892 5.54310 5.90207 5.94484 6.07700 6.13178 6.58245 7.11075 7.17049 7.55192 8.09005 8.68802 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.026646 B = 0.003223 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.568565 B = 8685.434319 C = 9168.755864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.013 4.013 3 Si 0.990 3.010 4 H -0.273 1.273 5 H -0.273 1.273 6 H -0.271 1.271 7 C -0.332 4.332 8 H 0.081 0.919 9 N -0.570 5.570 10 C 0.410 3.590 11 O -0.617 6.617 12 C 0.049 3.951 13 N -0.507 5.507 14 C 0.044 3.956 15 C -0.104 4.104 16 C -0.102 4.102 17 C -0.077 4.077 18 H 0.076 0.924 19 C 0.134 3.866 20 N -0.373 5.373 21 C 0.255 3.745 22 N -0.578 5.578 23 C 0.188 3.812 24 N -0.347 5.347 25 C 0.045 3.955 26 H 0.277 0.723 27 H 0.395 0.605 28 H 0.107 0.893 29 H 0.109 0.891 30 H 0.035 0.965 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.057 0.943 35 H 0.054 0.946 36 H 0.096 0.904 37 H 0.122 0.878 38 H 0.251 0.749 39 H 0.239 0.761 40 H 0.070 0.930 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.245 -14.344 2.916 16.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.213 4.213 3 Si 0.814 3.186 4 H -0.198 1.198 5 H -0.198 1.198 6 H -0.196 1.196 7 C -0.462 4.462 8 H 0.099 0.901 9 N -0.207 5.207 10 C 0.197 3.803 11 O -0.505 6.505 12 C -0.083 4.083 13 N -0.229 5.229 14 C -0.084 4.084 15 C -0.142 4.142 16 C -0.140 4.140 17 C -0.097 4.097 18 H 0.094 0.906 19 C 0.012 3.988 20 N -0.163 5.163 21 C -0.041 4.041 22 N -0.306 5.306 23 C -0.115 4.115 24 N -0.175 5.175 25 C -0.083 4.083 26 H 0.087 0.913 27 H 0.229 0.771 28 H 0.125 0.875 29 H 0.127 0.873 30 H 0.053 0.947 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.115 0.885 37 H 0.140 0.860 38 H 0.267 0.733 39 H 0.255 0.745 40 H 0.088 0.912 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.145 -14.920 2.963 16.806 hybrid contribution 0.108 1.996 -0.154 2.005 sum 7.253 -12.924 2.809 15.084 Atomic orbital electron populations 1.69667 1.06883 1.29354 1.50178 1.26029 0.96464 1.02452 0.96314 0.85028 0.77786 0.76847 0.78943 1.19787 1.19770 1.19583 1.19623 0.92712 0.84080 1.49756 0.90124 1.42149 1.09396 1.05034 1.64093 1.22073 0.88788 0.86908 0.82508 1.90379 1.15350 1.87536 1.57244 1.22133 0.95475 0.85347 1.05340 1.62452 1.18238 1.38994 1.03176 1.22202 0.96570 0.97996 0.91642 1.21465 0.97229 0.97290 0.98232 1.21470 0.97403 1.00800 0.94319 1.21240 0.95913 0.98684 0.93845 0.90572 1.21972 0.95829 0.81086 0.99870 1.50578 1.06333 1.06361 1.52999 1.26790 0.85378 0.96816 0.95097 1.70562 1.30763 1.02942 1.26302 1.26540 0.84766 1.02282 0.97888 1.78002 1.24287 0.88646 1.26575 1.22262 0.95552 0.97467 0.93047 0.91327 0.77110 0.87526 0.87285 0.94692 0.91179 0.90771 0.91389 0.92460 0.92702 0.88538 0.86009 0.73301 0.74514 0.91201 0.92137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.61 13.05 21.66 0.28 -48.33 16 2 C -0.01 -0.65 5.50 84.93 0.47 -0.19 16 3 Si 0.99 41.64 29.55 68.60 2.03 43.66 16 4 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 5 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 6 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 7 C -0.33 -18.02 9.68 84.04 0.81 -17.21 16 8 H 0.08 4.63 7.16 -2.91 -0.02 4.61 16 9 N -0.57 -27.79 5.29 -306.98 -1.62 -29.41 16 10 C 0.41 17.88 7.20 87.66 0.63 18.51 16 11 O -0.62 -30.03 11.20 -3.07 -0.03 -30.06 16 12 C 0.05 1.60 5.86 85.56 0.50 2.10 16 13 N -0.51 -15.53 4.86 -900.92 -4.37 -19.91 16 14 C 0.04 1.35 5.10 86.33 0.44 1.79 16 15 C -0.10 -2.62 6.09 30.65 0.19 -2.44 16 16 C -0.10 -2.47 5.14 30.67 0.16 -2.31 16 17 C -0.08 -1.85 2.45 -10.74 -0.03 -1.87 16 18 H 0.08 2.04 8.10 -2.39 -0.02 2.02 16 19 C 0.13 2.59 5.94 86.38 0.51 3.10 16 20 N -0.37 -7.76 3.20 -352.06 -1.13 -8.88 16 21 C 0.26 4.65 12.63 180.36 2.28 6.92 16 22 N -0.58 -12.80 11.19 -204.00 -2.28 -15.08 16 23 C 0.19 3.97 13.03 180.77 2.36 6.32 16 24 N -0.35 -8.42 12.53 -61.25 -0.77 -9.18 16 25 C 0.05 1.32 4.26 86.33 0.37 1.69 16 26 H 0.28 13.81 8.31 -92.71 -0.77 13.04 16 27 H 0.40 18.57 7.90 -92.71 -0.73 17.84 16 28 H 0.11 3.15 8.06 -2.39 -0.02 3.13 16 29 H 0.11 3.18 8.14 -2.39 -0.02 3.16 16 30 H 0.03 1.32 6.00 -2.39 -0.01 1.31 16 31 H 0.07 2.03 8.06 -2.39 -0.02 2.02 16 32 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.05 1.31 7.83 -2.39 -0.02 1.29 16 36 H 0.10 1.76 8.14 -2.39 -0.02 1.75 16 37 H 0.12 1.91 8.09 -2.39 -0.02 1.89 16 38 H 0.25 2.32 8.06 -2.91 -0.02 2.29 16 39 H 0.24 3.26 8.06 -2.91 -0.02 3.24 16 40 H 0.07 1.95 8.12 -2.39 -0.02 1.93 16 41 H 0.06 2.17 5.36 -2.38 -0.01 2.16 16 Total: -1.00 -66.79 334.87 1.10 -65.69 By element: Atomic # 1 Polarization: 34.77 SS G_CDS: 0.31 Total: 35.08 kcal Atomic # 6 Polarization: 7.74 SS G_CDS: 8.68 Total: 16.43 kcal Atomic # 7 Polarization: -120.91 SS G_CDS: -9.89 Total: -130.80 kcal Atomic # 8 Polarization: -30.03 SS G_CDS: -0.03 Total: -30.06 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.66 kcal Total: -66.79 1.10 -65.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330667631.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.044 kcal (2) G-P(sol) polarization free energy of solvation -66.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds