Wall clock time and date at job start Tue Mar 31 2020 03:21:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86798 * 120.00037 * 2 1 4 4 H 1.48504 * 109.47431 * 239.99808 * 3 2 1 5 5 H 1.48506 * 109.47245 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47518 * 119.99619 * 3 2 1 7 7 C 1.38945 * 120.00008 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99963 * 179.97438 * 7 2 1 9 9 N 1.37098 * 119.99972 * 0.02562 * 7 2 1 10 10 C 1.34779 * 119.99633 * 179.97438 * 9 7 2 11 11 O 1.21287 * 120.00271 * 359.97438 * 10 9 7 12 12 C 1.50704 * 119.99550 * 179.97438 * 10 9 7 13 13 N 1.46901 * 109.46946 * 179.97438 * 12 10 9 14 14 C 1.46839 * 111.00155 * 294.20945 * 13 12 10 15 15 C 1.53037 * 109.52571 * 174.15897 * 14 13 12 16 16 C 1.53129 * 109.30866 * 59.16015 * 15 14 13 17 17 C 1.53118 * 109.15835 * 302.40477 * 16 15 14 18 18 H 1.09000 * 109.50499 * 297.63626 * 17 16 15 19 19 C 1.52998 * 109.50534 * 177.55297 * 17 16 15 20 20 N 1.46499 * 109.46715 * 65.08050 * 19 17 16 21 21 C 1.34434 * 126.82568 * 125.00090 * 20 19 17 22 22 N 1.30825 * 108.08133 * 179.73483 * 21 20 19 23 23 C 1.33251 * 109.82850 * 359.97438 * 22 21 20 24 24 N 1.30709 * 108.94310 * 0.02562 * 23 22 21 25 25 C 1.46848 * 111.00094 * 169.99751 * 13 12 10 26 26 H 0.97006 * 120.00405 * 0.02562 * 1 2 3 27 27 H 0.96999 * 119.99947 * 359.97438 * 9 7 2 28 28 H 1.08996 * 109.47234 * 60.00068 * 12 10 9 29 29 H 1.09008 * 109.46964 * 299.99668 * 12 10 9 30 30 H 1.09002 * 109.46533 * 294.18029 * 14 13 12 31 31 H 1.08997 * 109.46273 * 54.14453 * 14 13 12 32 32 H 1.08999 * 109.50499 * 179.11570 * 15 14 13 33 33 H 1.09001 * 109.50530 * 299.20195 * 15 14 13 34 34 H 1.08998 * 109.55833 * 182.48184 * 16 15 14 35 35 H 1.09002 * 109.49197 * 62.28705 * 16 15 14 36 36 H 1.09000 * 109.47326 * 305.08121 * 19 17 16 37 37 H 1.09001 * 109.47193 * 185.07504 * 19 17 16 38 38 H 1.08002 * 125.95419 * 359.69419 * 21 20 19 39 39 H 1.07997 * 125.52448 * 179.97438 * 23 22 21 40 40 H 1.09001 * 109.45895 * 65.82169 * 25 13 12 41 41 H 1.09004 * 109.45389 * 305.85182 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0088 -1.2033 0.0005 8 1 3.0888 -1.2033 0.0001 9 7 1.3233 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2101 -3.5578 0.0001 12 6 1.2437 -4.8629 0.0011 13 7 2.1983 -5.9795 0.0004 14 6 2.9666 -6.0141 -1.2505 15 6 4.0466 -7.0944 -1.1576 16 6 3.3845 -8.4520 -0.9057 17 6 2.5509 -8.3743 0.3764 18 1 3.2041 -8.1626 1.2229 19 6 1.8369 -9.7083 0.6031 20 7 2.8291 -10.7571 0.8513 21 6 2.8826 -11.5809 1.9124 22 7 3.9106 -12.3752 1.7584 23 6 4.5346 -12.0905 0.6159 24 7 3.9096 -11.1063 0.0249 25 6 1.5144 -7.2568 0.2390 26 1 -0.4851 0.8401 -0.0004 27 1 0.3533 -2.3906 0.0005 28 1 0.6167 -4.9208 -0.8886 29 1 0.6174 -4.9204 0.8915 30 1 2.2980 -6.2395 -2.0813 31 1 3.4362 -5.0444 -1.4153 32 1 4.6065 -7.1306 -2.0921 33 1 4.7242 -6.8620 -0.3361 34 1 4.1525 -9.2175 -0.7949 35 1 2.7374 -8.7027 -1.7462 36 1 1.2528 -9.9627 -0.2813 37 1 1.1742 -9.6239 1.4644 38 1 2.1968 -11.5855 2.7468 39 1 5.4145 -12.5912 0.2398 40 1 0.8525 -7.4763 -0.5987 41 1 0.9292 -7.1895 1.1562 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330667632.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:21:43 Heat of formation + Delta-G solvation = 60.384017 kcal Electronic energy + Delta-G solvation = -23229.908248 eV Core-core repulsion = 19760.811664 eV Total energy + Delta-G solvation = -3469.096584 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.26784 -39.36392 -37.79211 -35.16176 -33.88109 -32.70306 -31.45400 -31.24127 -31.00575 -27.54987 -26.48535 -24.67365 -22.89387 -22.75940 -22.01363 -21.29555 -19.70512 -19.16000 -17.86239 -17.49117 -16.17255 -16.04617 -15.35041 -15.18931 -14.82928 -14.71833 -14.60348 -14.14375 -14.04785 -13.75729 -13.51772 -13.39445 -12.83007 -12.54952 -12.52360 -12.11032 -11.72630 -11.51139 -11.41824 -11.19059 -11.02011 -10.59633 -10.46063 -10.38603 -10.31115 -10.21716 -10.10598 -9.92431 -9.77964 -9.45703 -8.43706 -7.98638 -7.85294 -6.42542 -3.83312 1.42699 2.07963 2.76563 3.19367 3.25068 3.29441 3.85616 3.90414 4.09730 4.17458 4.24161 4.59870 4.64818 4.79338 4.81593 5.03550 5.08794 5.20340 5.24727 5.30331 5.40133 5.52480 5.61003 5.70118 5.80095 5.85930 5.94001 5.97806 6.07328 6.10957 6.19759 6.26921 6.39154 6.51739 6.57384 6.65178 7.29877 7.41617 7.54316 7.86760 8.05571 8.61183 9.17406 9.53661 10.05677 10.75178 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.043370 B = 0.002674 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.445912 B =10467.816466 C =10698.488558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.299 4.299 8 H 0.102 0.898 9 N -0.564 5.564 10 C 0.444 3.556 11 O -0.576 6.576 12 C 0.047 3.953 13 N -0.513 5.513 14 C 0.051 3.949 15 C -0.112 4.112 16 C -0.120 4.120 17 C -0.094 4.094 18 H 0.085 0.915 19 C 0.132 3.868 20 N -0.371 5.371 21 C 0.251 3.749 22 N -0.551 5.551 23 C 0.191 3.809 24 N -0.310 5.310 25 C 0.064 3.936 26 H 0.272 0.728 27 H 0.392 0.608 28 H 0.047 0.953 29 H 0.088 0.912 30 H 0.020 0.980 31 H 0.103 0.897 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.088 0.912 35 H 0.053 0.947 36 H 0.089 0.911 37 H 0.103 0.897 38 H 0.217 0.783 39 H 0.214 0.786 40 H 0.032 0.968 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.528 -20.507 0.731 20.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.428 4.428 8 H 0.120 0.880 9 N -0.201 5.201 10 C 0.229 3.771 11 O -0.460 6.460 12 C -0.084 4.084 13 N -0.238 5.238 14 C -0.076 4.076 15 C -0.150 4.150 16 C -0.158 4.158 17 C -0.113 4.113 18 H 0.104 0.896 19 C 0.009 3.991 20 N -0.162 5.162 21 C -0.046 4.046 22 N -0.278 5.278 23 C -0.112 4.112 24 N -0.138 5.138 25 C -0.065 4.065 26 H 0.082 0.918 27 H 0.225 0.775 28 H 0.065 0.935 29 H 0.106 0.894 30 H 0.038 0.962 31 H 0.121 0.879 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.107 0.893 35 H 0.072 0.928 36 H 0.107 0.893 37 H 0.122 0.878 38 H 0.233 0.767 39 H 0.231 0.769 40 H 0.051 0.949 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.735 -20.135 0.637 20.159 hybrid contribution -1.137 0.855 -0.465 1.497 sum -0.402 -19.280 0.171 19.285 Atomic orbital electron populations 1.69601 1.05933 1.28251 1.50632 1.25251 0.95630 0.99704 0.97342 0.85925 0.78768 0.80484 0.79084 1.19927 1.20986 1.19880 1.19644 0.93327 0.82222 1.47641 0.87981 1.41863 1.09168 1.04583 1.64511 1.19728 0.88417 0.84530 0.84425 1.90488 1.13696 1.86851 1.55006 1.21836 0.93905 0.91260 1.01436 1.61429 1.24913 1.00919 1.36499 1.22288 0.95192 1.01746 0.88369 1.21529 0.97977 0.93660 1.01787 1.21837 0.99950 0.98482 0.95519 1.21429 0.97736 0.91340 1.00810 0.89634 1.21965 0.88080 0.85308 1.03697 1.50565 1.22149 1.27496 1.15976 1.26066 0.97085 0.88389 0.93029 1.70529 1.08887 1.28205 1.20197 1.26041 1.00522 0.94175 0.90443 1.78004 1.00142 1.17769 1.17856 1.21999 0.94500 0.89431 1.00617 0.91833 0.77515 0.93527 0.89382 0.96172 0.87907 0.91878 0.91227 0.89346 0.92818 0.89255 0.87841 0.76655 0.76923 0.94944 0.90700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.42 13.05 55.50 0.72 -23.69 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 21.00 29.55 -169.99 -5.02 15.98 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 7 C -0.30 -8.28 9.68 -14.93 -0.14 -8.42 16 8 H 0.10 2.96 7.16 -52.49 -0.38 2.59 16 9 N -0.56 -14.17 5.29 -10.96 -0.06 -14.22 16 10 C 0.44 10.34 7.46 -10.98 -0.08 10.25 16 11 O -0.58 -15.38 13.90 5.55 0.08 -15.30 16 12 C 0.05 0.82 5.45 -4.97 -0.03 0.79 16 13 N -0.51 -8.31 4.40 -236.11 -1.04 -9.35 16 14 C 0.05 0.85 5.11 -3.84 -0.02 0.83 16 15 C -0.11 -1.58 6.09 -26.65 -0.16 -1.75 16 16 C -0.12 -1.43 4.95 -26.60 -0.13 -1.57 16 17 C -0.09 -0.99 2.56 -90.54 -0.23 -1.22 16 18 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 19 C 0.13 0.98 6.00 -4.04 -0.02 0.96 16 20 N -0.37 -3.46 3.69 -62.63 -0.23 -3.69 16 21 C 0.25 2.09 12.63 -90.65 -1.14 0.95 16 22 N -0.55 -5.86 11.19 -15.83 -0.18 -6.04 16 23 C 0.19 1.93 13.03 -91.81 -1.20 0.74 16 24 N -0.31 -3.47 9.88 29.29 0.29 -3.18 16 25 C 0.06 0.74 4.74 -3.83 -0.02 0.72 16 26 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 27 H 0.39 9.38 7.90 -40.82 -0.32 9.06 16 28 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 29 H 0.09 1.36 7.99 -51.92 -0.41 0.95 16 30 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.10 2.08 5.78 -51.93 -0.30 1.78 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.09 1.11 5.57 -51.93 -0.29 0.83 16 35 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.10 0.46 8.09 -51.93 -0.42 0.04 16 38 H 0.22 0.83 8.06 -52.49 -0.42 0.41 16 39 H 0.21 1.44 8.06 -52.49 -0.42 1.02 16 40 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 41 H 0.07 0.75 8.02 -51.93 -0.42 0.33 16 LS Contribution 335.49 15.07 5.06 5.06 Total: -1.00 -33.57 335.49 -9.56 -43.13 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -5.90 Total: 8.54 kcal Atomic # 6 Polarization: 6.05 SS G_CDS: -3.28 Total: 2.77 kcal Atomic # 7 Polarization: -59.69 SS G_CDS: -0.49 Total: -60.18 kcal Atomic # 8 Polarization: -15.38 SS G_CDS: 0.08 Total: -15.30 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.57 -9.56 -43.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330667632.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.514 kcal (2) G-P(sol) polarization free energy of solvation -33.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds