Wall clock time and date at job start Tue Mar 31 2020 03:21:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86798 * 120.00037 * 2 1 4 4 H 1.48504 * 109.47431 * 239.99808 * 3 2 1 5 5 H 1.48506 * 109.47245 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47518 * 119.99619 * 3 2 1 7 7 C 1.38945 * 120.00008 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99963 * 179.97438 * 7 2 1 9 9 N 1.37098 * 119.99972 * 0.02562 * 7 2 1 10 10 C 1.34779 * 119.99633 * 179.97438 * 9 7 2 11 11 O 1.21287 * 120.00271 * 359.97438 * 10 9 7 12 12 C 1.50704 * 119.99550 * 179.97438 * 10 9 7 13 13 N 1.46901 * 109.46946 * 179.97438 * 12 10 9 14 14 C 1.46839 * 111.00155 * 294.20945 * 13 12 10 15 15 C 1.53037 * 109.52571 * 174.15897 * 14 13 12 16 16 C 1.53129 * 109.30866 * 59.16015 * 15 14 13 17 17 C 1.53118 * 109.15835 * 302.40477 * 16 15 14 18 18 H 1.09000 * 109.50499 * 297.63626 * 17 16 15 19 19 C 1.52998 * 109.50534 * 177.55297 * 17 16 15 20 20 N 1.46499 * 109.46715 * 65.08050 * 19 17 16 21 21 C 1.34434 * 126.82568 * 125.00090 * 20 19 17 22 22 N 1.30825 * 108.08133 * 179.73483 * 21 20 19 23 23 C 1.33251 * 109.82850 * 359.97438 * 22 21 20 24 24 N 1.30709 * 108.94310 * 0.02562 * 23 22 21 25 25 C 1.46848 * 111.00094 * 169.99751 * 13 12 10 26 26 H 0.97006 * 120.00405 * 0.02562 * 1 2 3 27 27 H 0.96999 * 119.99947 * 359.97438 * 9 7 2 28 28 H 1.08996 * 109.47234 * 60.00068 * 12 10 9 29 29 H 1.09008 * 109.46964 * 299.99668 * 12 10 9 30 30 H 1.09002 * 109.46533 * 294.18029 * 14 13 12 31 31 H 1.08997 * 109.46273 * 54.14453 * 14 13 12 32 32 H 1.08999 * 109.50499 * 179.11570 * 15 14 13 33 33 H 1.09001 * 109.50530 * 299.20195 * 15 14 13 34 34 H 1.08998 * 109.55833 * 182.48184 * 16 15 14 35 35 H 1.09002 * 109.49197 * 62.28705 * 16 15 14 36 36 H 1.09000 * 109.47326 * 305.08121 * 19 17 16 37 37 H 1.09001 * 109.47193 * 185.07504 * 19 17 16 38 38 H 1.08002 * 125.95419 * 359.69419 * 21 20 19 39 39 H 1.07997 * 125.52448 * 179.97438 * 23 22 21 40 40 H 1.09001 * 109.45895 * 65.82169 * 25 13 12 41 41 H 1.09004 * 109.45389 * 305.85182 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0088 -1.2033 0.0005 8 1 3.0888 -1.2033 0.0001 9 7 1.3233 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2101 -3.5578 0.0001 12 6 1.2437 -4.8629 0.0011 13 7 2.1983 -5.9795 0.0004 14 6 2.9666 -6.0141 -1.2505 15 6 4.0466 -7.0944 -1.1576 16 6 3.3845 -8.4520 -0.9057 17 6 2.5509 -8.3743 0.3764 18 1 3.2041 -8.1626 1.2229 19 6 1.8369 -9.7083 0.6031 20 7 2.8291 -10.7571 0.8513 21 6 2.8826 -11.5809 1.9124 22 7 3.9106 -12.3752 1.7584 23 6 4.5346 -12.0905 0.6159 24 7 3.9096 -11.1063 0.0249 25 6 1.5144 -7.2568 0.2390 26 1 -0.4851 0.8401 -0.0004 27 1 0.3533 -2.3906 0.0005 28 1 0.6167 -4.9208 -0.8886 29 1 0.6174 -4.9204 0.8915 30 1 2.2980 -6.2395 -2.0813 31 1 3.4362 -5.0444 -1.4153 32 1 4.6065 -7.1306 -2.0921 33 1 4.7242 -6.8620 -0.3361 34 1 4.1525 -9.2175 -0.7949 35 1 2.7374 -8.7027 -1.7462 36 1 1.2528 -9.9627 -0.2813 37 1 1.1742 -9.6239 1.4644 38 1 2.1968 -11.5855 2.7468 39 1 5.4145 -12.5912 0.2398 40 1 0.8525 -7.4763 -0.5987 41 1 0.9292 -7.1895 1.1562 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330667632.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:21:43 Heat of formation + Delta-G solvation = 38.169526 kcal Electronic energy + Delta-G solvation = -23230.871541 eV Core-core repulsion = 19760.811664 eV Total energy + Delta-G solvation = -3470.059877 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.92967 -40.71491 -39.35739 -36.27861 -35.68528 -33.83755 -33.20157 -32.17975 -31.92883 -29.01124 -27.30135 -26.48560 -24.06086 -23.68947 -22.70343 -22.15268 -20.94626 -20.71763 -19.85368 -18.17961 -17.69602 -17.07522 -16.54986 -16.33986 -16.28422 -15.92224 -15.73597 -15.34941 -15.27362 -14.91399 -14.77104 -14.61402 -13.95478 -13.81777 -13.49038 -13.34256 -13.32377 -13.00087 -12.63530 -12.59437 -12.43398 -12.18543 -12.12987 -11.72242 -11.53026 -11.34215 -11.25256 -10.85560 -10.66514 -10.53364 -10.20623 -9.98969 -9.16690 -8.46296 -5.94620 0.78367 1.39028 1.40827 1.49457 1.51640 2.07031 2.08730 2.28340 2.75617 3.20657 3.38842 3.55921 3.60332 3.74313 3.89681 3.97666 4.16195 4.21462 4.30464 4.37493 4.41365 4.49170 4.51145 4.55091 4.62816 4.70205 4.77987 4.84878 5.02766 5.08780 5.15553 5.29792 5.38434 5.41014 5.45577 5.68088 5.91449 6.00792 6.10761 6.28646 6.62066 7.13983 7.20454 7.57959 8.14552 8.70895 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.043370 B = 0.002674 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.445912 B =10467.816466 C =10698.488558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.012 4.012 3 Si 0.990 3.010 4 H -0.273 1.273 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.332 4.332 8 H 0.076 0.924 9 N -0.575 5.575 10 C 0.440 3.560 11 O -0.616 6.616 12 C 0.060 3.940 13 N -0.536 5.536 14 C 0.057 3.943 15 C -0.107 4.107 16 C -0.112 4.112 17 C -0.086 4.086 18 H 0.063 0.937 19 C 0.135 3.865 20 N -0.378 5.378 21 C 0.258 3.742 22 N -0.583 5.583 23 C 0.183 3.817 24 N -0.343 5.343 25 C 0.064 3.936 26 H 0.278 0.722 27 H 0.396 0.604 28 H 0.067 0.933 29 H 0.116 0.884 30 H 0.032 0.968 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.044 0.956 34 H 0.082 0.918 35 H 0.062 0.938 36 H 0.101 0.899 37 H 0.144 0.856 38 H 0.259 0.741 39 H 0.233 0.767 40 H 0.052 0.948 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.411 -21.769 1.373 21.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.212 4.212 3 Si 0.814 3.186 4 H -0.199 1.199 5 H -0.194 1.194 6 H -0.198 1.198 7 C -0.462 4.462 8 H 0.095 0.905 9 N -0.213 5.213 10 C 0.227 3.773 11 O -0.502 6.502 12 C -0.071 4.071 13 N -0.261 5.261 14 C -0.071 4.071 15 C -0.145 4.145 16 C -0.149 4.149 17 C -0.106 4.106 18 H 0.082 0.918 19 C 0.014 3.986 20 N -0.168 5.168 21 C -0.038 4.038 22 N -0.311 5.311 23 C -0.119 4.119 24 N -0.171 5.171 25 C -0.064 4.064 26 H 0.087 0.913 27 H 0.230 0.770 28 H 0.085 0.915 29 H 0.134 0.866 30 H 0.051 0.949 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.063 0.937 34 H 0.101 0.899 35 H 0.080 0.920 36 H 0.119 0.881 37 H 0.161 0.839 38 H 0.275 0.725 39 H 0.249 0.751 40 H 0.070 0.930 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -1.176 -21.415 1.275 21.485 hybrid contribution -0.514 1.198 -0.657 1.460 sum -1.691 -20.218 0.618 20.298 Atomic orbital electron populations 1.69656 1.06734 1.29307 1.50427 1.25992 0.96542 1.02277 0.96388 0.85030 0.77806 0.76872 0.78877 1.19851 1.19393 1.19796 1.19587 0.92599 0.84097 1.49905 0.90550 1.41930 1.09299 1.04658 1.65373 1.20863 0.88318 0.86056 0.82041 1.90471 1.15893 1.87781 1.56078 1.21716 0.93489 0.88304 1.03633 1.61367 1.25678 1.02738 1.36273 1.22101 0.95836 0.99868 0.89313 1.21466 0.97214 0.94682 1.01093 1.21751 1.00050 0.96279 0.96839 1.21308 0.97257 0.93114 0.98895 0.91834 1.22090 0.87535 0.82793 1.06182 1.50666 1.22075 1.28008 1.16042 1.26894 0.96654 0.86998 0.93253 1.70540 1.10154 1.29636 1.20729 1.26507 1.01004 0.93983 0.90400 1.77927 1.01377 1.18575 1.19239 1.22132 0.94748 0.86992 1.02504 0.91307 0.76975 0.91510 0.86598 0.94950 0.92601 0.91429 0.93705 0.89928 0.91960 0.88115 0.83851 0.72546 0.75105 0.93021 0.88214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.46 13.05 21.66 0.28 -49.18 16 2 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 3 Si 0.99 43.08 29.55 68.60 2.03 45.11 16 4 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 5 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 6 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 7 C -0.33 -18.91 9.68 84.04 0.81 -18.10 16 8 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 9 N -0.57 -29.38 5.29 -306.98 -1.62 -31.00 16 10 C 0.44 20.83 7.46 87.66 0.65 21.49 16 11 O -0.62 -34.27 13.90 -3.05 -0.04 -34.32 16 12 C 0.06 1.98 5.45 85.56 0.47 2.45 16 13 N -0.54 -16.69 4.40 -900.93 -3.96 -20.65 16 14 C 0.06 1.88 5.11 86.33 0.44 2.32 16 15 C -0.11 -3.08 6.09 30.65 0.19 -2.89 16 16 C -0.11 -2.53 4.95 30.68 0.15 -2.38 16 17 C -0.09 -1.61 2.56 -10.74 -0.03 -1.63 16 18 H 0.06 1.49 8.14 -2.39 -0.02 1.48 16 19 C 0.14 1.50 6.00 86.38 0.52 2.01 16 20 N -0.38 -6.05 3.69 -352.06 -1.30 -7.35 16 21 C 0.26 3.56 12.63 180.36 2.28 5.83 16 22 N -0.58 -11.47 11.19 -204.00 -2.28 -13.75 16 23 C 0.18 3.55 13.03 180.76 2.36 5.90 16 24 N -0.34 -7.26 9.88 -61.24 -0.60 -7.87 16 25 C 0.06 1.26 4.74 86.33 0.41 1.67 16 26 H 0.28 13.99 8.31 -92.70 -0.77 13.22 16 27 H 0.40 19.08 7.90 -92.71 -0.73 18.35 16 28 H 0.07 1.98 8.12 -2.39 -0.02 1.96 16 29 H 0.12 3.23 7.99 -2.38 -0.02 3.22 16 30 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.06 2.38 5.78 -2.39 -0.01 2.37 16 32 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.08 2.03 5.57 -2.39 -0.01 2.02 16 35 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.14 0.47 8.09 -2.39 -0.02 0.45 16 38 H 0.26 0.86 8.06 -2.91 -0.02 0.84 16 39 H 0.23 3.02 8.06 -2.91 -0.02 3.00 16 40 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.10 1.52 8.02 -2.38 -0.02 1.50 16 Total: -1.00 -76.12 335.49 1.52 -74.60 By element: Atomic # 1 Polarization: 27.60 SS G_CDS: 0.31 Total: 27.91 kcal Atomic # 6 Polarization: 7.78 SS G_CDS: 8.71 Total: 16.49 kcal Atomic # 7 Polarization: -120.31 SS G_CDS: -9.49 Total: -129.80 kcal Atomic # 8 Polarization: -34.27 SS G_CDS: -0.04 Total: -34.32 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -76.12 1.52 -74.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330667632.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.774 kcal (2) G-P(sol) polarization free energy of solvation -76.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds