Wall clock time and date at job start Tue Mar 31 2020 03:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30839 * 125.96030 * 2 1 4 4 C 1.33240 * 109.82479 * 179.97438 * 3 2 1 5 5 C 1.50703 * 125.52408 * 179.97438 * 4 3 2 6 6 H 1.08998 * 109.50519 * 0.08311 * 5 4 3 7 7 C 1.53123 * 109.50124 * 120.19901 * 5 4 3 8 8 C 1.53121 * 109.16045 * 177.59803 * 7 5 4 9 9 C 1.53041 * 109.27745 * 302.34656 * 8 7 5 10 10 N 1.46844 * 109.52359 * 59.18000 * 9 8 7 11 11 C 1.46902 * 110.99709 * 174.16160 * 10 9 8 12 12 C 1.50709 * 109.46785 * 190.59657 * 11 10 9 13 13 O 1.21289 * 119.99754 * 6.27107 * 12 11 10 14 14 N 1.34773 * 119.99690 * 186.26395 * 12 11 10 15 15 C 1.37098 * 119.99979 * 180.02562 * 14 12 11 16 16 H 1.08004 * 119.99855 * 0.02562 * 15 14 12 17 17 C 1.38947 * 119.99955 * 180.02562 * 15 14 12 18 18 N 1.31421 * 119.99753 * 180.02562 * 17 15 14 19 19 Si 1.86794 * 120.00240 * 0.02562 * 17 15 14 20 20 H 1.48503 * 109.47034 * 89.99880 * 19 17 15 21 21 H 1.48508 * 109.47161 * 209.99947 * 19 17 15 22 22 H 1.48500 * 109.47233 * 329.99875 * 19 17 15 23 23 C 1.46850 * 111.19618 * 298.25587 * 10 9 8 24 24 N 1.30712 * 108.95014 * 359.75581 * 4 3 2 25 25 N 1.34434 * 125.96413 * 179.97438 * 2 1 3 26 26 H 0.97003 * 126.81639 * 0.02562 * 25 2 1 27 27 H 1.08997 * 109.47292 * 270.01903 * 1 2 3 28 28 H 1.08999 * 109.47157 * 30.01700 * 1 2 3 29 29 H 1.08996 * 109.47047 * 150.01891 * 1 2 3 30 30 H 1.09006 * 109.52278 * 297.49699 * 7 5 4 31 31 H 1.08998 * 109.52422 * 57.69227 * 7 5 4 32 32 H 1.08995 * 109.50506 * 182.40564 * 8 7 5 33 33 H 1.09002 * 109.50446 * 62.28601 * 8 7 5 34 34 H 1.08996 * 109.45787 * 299.16017 * 9 8 7 35 35 H 1.09001 * 109.46282 * 179.19646 * 9 8 7 36 36 H 1.08997 * 109.47008 * 310.59897 * 11 10 9 37 37 H 1.08997 * 109.46891 * 70.60175 * 11 10 9 38 38 H 0.97002 * 120.00362 * 0.02562 * 14 12 11 39 39 H 0.96996 * 119.99305 * 179.97438 * 18 17 15 40 40 H 1.08996 * 109.46185 * 301.73041 * 23 10 9 41 41 H 1.09003 * 109.45032 * 181.75123 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5552 0.6888 0.0006 5 6 4.7372 1.6236 0.0002 6 1 4.3853 2.6552 0.0009 7 6 5.5882 1.3721 1.2481 8 6 6.8180 2.2835 1.2097 9 6 7.6062 2.0148 -0.0743 10 7 6.7489 2.2703 -1.2389 11 6 7.5118 2.1565 -2.4891 12 6 6.6795 2.6737 -3.6342 13 8 5.6084 3.1995 -3.4163 14 7 7.1255 2.5522 -4.9001 15 6 6.3687 3.0231 -5.9418 16 1 5.4153 3.4919 -5.7478 17 6 6.8283 2.8973 -7.2470 18 7 6.1030 3.3492 -8.2454 19 14 8.4770 2.0858 -7.5825 20 1 8.2804 0.6264 -7.7745 21 1 9.0758 2.6703 -8.8094 22 1 9.3854 2.3156 -6.4305 23 6 5.5857 1.3740 -1.2487 24 7 3.6194 -0.6168 0.0062 25 7 2.2964 -1.0881 0.0005 26 1 2.0093 -2.0146 0.0006 27 1 -0.3634 0.0003 1.0276 28 1 -0.3633 0.8898 -0.5141 29 1 -0.3633 -0.8901 -0.5135 30 1 5.0006 1.5906 2.1398 31 1 5.9075 0.3301 1.2673 32 1 7.4498 2.0788 2.0740 33 1 6.4994 3.3257 1.2298 34 1 7.9363 0.9761 -0.0871 35 1 8.4748 2.6723 -0.1116 36 1 8.4270 2.7434 -2.4110 37 1 7.7644 1.1112 -2.6667 38 1 7.9820 2.1314 -5.0743 39 1 6.4241 3.2616 -9.1565 40 1 5.9253 0.3384 -1.2560 41 1 4.9869 1.5663 -2.1390 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330724345.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:36:08 Heat of formation + Delta-G solvation = 52.457977 kcal Electronic energy + Delta-G solvation = -23543.867216 eV Core-core repulsion = 20074.426933 eV Total energy + Delta-G solvation = -3469.440283 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.19724 -39.24446 -37.70391 -34.31354 -33.79197 -32.53434 -32.39657 -31.58691 -30.56506 -27.96212 -27.57306 -24.54225 -24.07350 -22.70720 -21.46098 -20.44509 -19.30923 -19.26388 -18.22432 -17.91275 -16.04635 -15.78906 -15.54730 -15.03733 -14.82707 -14.44903 -14.29792 -13.99648 -13.61722 -13.45033 -13.33915 -13.07644 -12.92678 -12.83612 -12.41793 -12.18407 -11.92864 -11.79376 -11.53867 -11.21511 -11.11571 -10.76173 -10.55423 -10.51978 -10.43659 -10.00214 -9.98221 -9.91754 -9.48915 -9.41360 -8.48129 -8.11599 -7.88401 -6.25719 -3.76571 1.53597 2.56372 2.85994 3.06508 3.10392 3.18249 3.76324 3.81958 4.10045 4.15293 4.52692 4.63974 4.86299 4.95234 5.00121 5.08060 5.12064 5.21158 5.27792 5.46126 5.51816 5.54658 5.66192 5.67658 5.75694 5.79849 5.84615 5.98523 6.02197 6.10930 6.14614 6.23970 6.36525 6.45645 6.56208 6.97125 7.24773 7.39758 7.64993 8.10282 8.21039 8.66917 9.01675 9.48868 9.91176 10.87661 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.015620 B = 0.004054 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.190349 B = 6905.741891 C = 8130.178725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.278 3.722 3 N -0.532 5.532 4 C 0.248 3.752 5 C 0.011 3.989 6 H 0.109 0.891 7 C -0.109 4.109 8 C -0.113 4.113 9 C 0.053 3.947 10 N -0.513 5.513 11 C 0.045 3.955 12 C 0.452 3.548 13 O -0.554 6.554 14 N -0.594 5.594 15 C -0.302 4.302 16 H 0.120 0.880 17 C 0.040 3.960 18 N -0.884 5.884 19 Si 0.879 3.121 20 H -0.272 1.272 21 H -0.277 1.277 22 H -0.269 1.269 23 C 0.068 3.932 24 N -0.314 5.314 25 N -0.488 5.488 26 H 0.437 0.563 27 H 0.090 0.910 28 H 0.099 0.901 29 H 0.081 0.919 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.030 0.970 35 H 0.076 0.924 36 H 0.093 0.907 37 H 0.047 0.953 38 H 0.370 0.630 39 H 0.272 0.728 40 H 0.031 0.969 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.896 -9.898 19.318 21.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.000 4.000 3 N -0.261 5.261 4 C -0.035 4.035 5 C -0.011 4.011 6 H 0.127 0.873 7 C -0.148 4.148 8 C -0.151 4.151 9 C -0.075 4.075 10 N -0.238 5.238 11 C -0.087 4.087 12 C 0.238 3.762 13 O -0.435 6.435 14 N -0.234 5.234 15 C -0.431 4.431 16 H 0.137 0.863 17 C -0.162 4.162 18 N -0.524 5.524 19 Si 0.705 3.295 20 H -0.198 1.198 21 H -0.202 1.202 22 H -0.195 1.195 23 C -0.060 4.060 24 N -0.143 5.143 25 N -0.206 5.206 26 H 0.282 0.718 27 H 0.108 0.892 28 H 0.118 0.882 29 H 0.100 0.900 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.049 0.951 35 H 0.094 0.906 36 H 0.111 0.889 37 H 0.065 0.935 38 H 0.202 0.798 39 H 0.083 0.917 40 H 0.049 0.951 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.256 -9.034 19.266 21.527 hybrid contribution 1.236 -2.194 -0.674 2.607 sum -2.020 -11.228 18.592 21.813 Atomic orbital electron populations 1.20378 0.83753 1.05135 1.04310 1.24422 0.96634 0.82952 0.96034 1.70413 1.01518 1.29364 1.24776 1.24173 0.93112 0.89851 0.96396 1.19568 0.88297 0.97352 0.95858 0.87311 1.21612 0.96365 1.00180 0.96615 1.21551 0.96166 1.00814 0.96524 1.22149 0.95690 0.99127 0.90555 1.61405 1.07732 1.53775 1.00848 1.21879 0.96955 0.99839 0.89996 1.19695 0.88275 0.85161 0.83103 1.90563 1.22964 1.46300 1.83692 1.42227 1.19988 1.55144 1.06047 1.19435 1.04112 1.35773 0.83751 0.86284 1.25023 0.98083 0.97799 0.95298 1.69630 1.37682 1.45776 0.99319 0.86683 0.83868 0.80175 0.78737 1.19769 1.20224 1.19450 1.22101 0.92285 0.93113 0.98537 1.77967 0.96354 1.12593 1.27384 1.47987 1.04511 1.09854 1.58248 0.71777 0.89166 0.88187 0.89973 0.91819 0.91705 0.91332 0.90550 0.95138 0.90597 0.88907 0.93529 0.79791 0.91715 0.95118 0.88345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.50 10.51 36.00 0.38 -0.12 16 2 C 0.28 3.28 8.24 -155.69 -1.28 1.99 16 3 N -0.53 -8.40 11.19 -8.16 -0.09 -8.50 16 4 C 0.25 3.99 6.65 -156.85 -1.04 2.94 16 5 C 0.01 0.17 2.82 -91.69 -0.26 -0.09 16 6 H 0.11 1.84 8.14 -51.93 -0.42 1.42 16 7 C -0.11 -1.36 5.27 -26.60 -0.14 -1.50 16 8 C -0.11 -1.27 6.09 -26.65 -0.16 -1.43 16 9 C 0.05 0.67 5.46 -3.83 -0.02 0.65 16 10 N -0.51 -8.64 4.35 -236.11 -1.03 -9.67 16 11 C 0.04 0.79 5.45 -4.97 -0.03 0.76 16 12 C 0.45 10.61 7.31 -10.98 -0.08 10.53 16 13 O -0.55 -15.24 14.29 5.55 0.08 -15.16 16 14 N -0.59 -14.53 5.09 -10.96 -0.06 -14.59 16 15 C -0.30 -8.72 10.16 -14.93 -0.15 -8.87 16 16 H 0.12 3.93 7.39 -52.48 -0.39 3.54 16 17 C 0.04 1.13 5.50 -17.46 -0.10 1.03 16 18 N -0.88 -26.27 13.96 55.50 0.77 -25.49 16 19 Si 0.88 19.77 27.74 -169.99 -4.71 15.05 16 20 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 21 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 22 H -0.27 -5.52 6.52 56.52 0.37 -5.15 16 23 C 0.07 1.20 4.38 -3.83 -0.02 1.19 16 24 N -0.31 -4.73 12.80 32.42 0.41 -4.32 16 25 N -0.49 -5.51 7.45 32.62 0.24 -5.26 16 26 H 0.44 3.12 8.96 -182.34 -1.63 1.48 16 27 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.08 0.87 8.01 -51.93 -0.42 0.45 16 36 H 0.09 1.41 7.98 -51.93 -0.41 1.00 16 37 H 0.05 0.74 8.12 -51.93 -0.42 0.32 16 38 H 0.37 7.95 5.76 -40.82 -0.24 7.72 16 39 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 40 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.10 2.14 6.06 -51.93 -0.31 1.83 16 LS Contribution 337.42 15.07 5.08 5.08 Total: -1.00 -36.46 337.42 -9.41 -45.87 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: -7.22 Total: 9.90 kcal Atomic # 6 Polarization: 9.98 SS G_CDS: -2.90 Total: 7.08 kcal Atomic # 7 Polarization: -68.09 SS G_CDS: 0.26 Total: -67.83 kcal Atomic # 8 Polarization: -15.24 SS G_CDS: 0.08 Total: -15.16 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -4.71 Total: 15.05 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -36.46 -9.41 -45.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330724345.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.329 kcal (2) G-P(sol) polarization free energy of solvation -36.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds