Wall clock time and date at job start Tue Mar 31 2020 03:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30839 * 125.96030 * 2 1 4 4 C 1.33240 * 109.82479 * 179.97438 * 3 2 1 5 5 C 1.50703 * 125.52408 * 179.97438 * 4 3 2 6 6 H 1.08998 * 109.50519 * 0.08311 * 5 4 3 7 7 C 1.53123 * 109.50124 * 120.19901 * 5 4 3 8 8 C 1.53121 * 109.16045 * 177.59803 * 7 5 4 9 9 C 1.53041 * 109.27745 * 302.34656 * 8 7 5 10 10 N 1.46844 * 109.52359 * 59.18000 * 9 8 7 11 11 C 1.46902 * 110.99709 * 174.16160 * 10 9 8 12 12 C 1.50709 * 109.46785 * 190.59657 * 11 10 9 13 13 O 1.21289 * 119.99754 * 6.27107 * 12 11 10 14 14 N 1.34773 * 119.99690 * 186.26395 * 12 11 10 15 15 C 1.37098 * 119.99979 * 180.02562 * 14 12 11 16 16 H 1.08004 * 119.99855 * 0.02562 * 15 14 12 17 17 C 1.38947 * 119.99955 * 180.02562 * 15 14 12 18 18 N 1.31421 * 119.99753 * 180.02562 * 17 15 14 19 19 Si 1.86794 * 120.00240 * 0.02562 * 17 15 14 20 20 H 1.48503 * 109.47034 * 89.99880 * 19 17 15 21 21 H 1.48508 * 109.47161 * 209.99947 * 19 17 15 22 22 H 1.48500 * 109.47233 * 329.99875 * 19 17 15 23 23 C 1.46850 * 111.19618 * 298.25587 * 10 9 8 24 24 N 1.30712 * 108.95014 * 359.75581 * 4 3 2 25 25 N 1.34434 * 125.96413 * 179.97438 * 2 1 3 26 26 H 0.97003 * 126.81639 * 0.02562 * 25 2 1 27 27 H 1.08997 * 109.47292 * 270.01903 * 1 2 3 28 28 H 1.08999 * 109.47157 * 30.01700 * 1 2 3 29 29 H 1.08996 * 109.47047 * 150.01891 * 1 2 3 30 30 H 1.09006 * 109.52278 * 297.49699 * 7 5 4 31 31 H 1.08998 * 109.52422 * 57.69227 * 7 5 4 32 32 H 1.08995 * 109.50506 * 182.40564 * 8 7 5 33 33 H 1.09002 * 109.50446 * 62.28601 * 8 7 5 34 34 H 1.08996 * 109.45787 * 299.16017 * 9 8 7 35 35 H 1.09001 * 109.46282 * 179.19646 * 9 8 7 36 36 H 1.08997 * 109.47008 * 310.59897 * 11 10 9 37 37 H 1.08997 * 109.46891 * 70.60175 * 11 10 9 38 38 H 0.97002 * 120.00362 * 0.02562 * 14 12 11 39 39 H 0.96996 * 119.99305 * 179.97438 * 18 17 15 40 40 H 1.08996 * 109.46185 * 301.73041 * 23 10 9 41 41 H 1.09003 * 109.45032 * 181.75123 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5552 0.6888 0.0006 5 6 4.7372 1.6236 0.0002 6 1 4.3853 2.6552 0.0009 7 6 5.5882 1.3721 1.2481 8 6 6.8180 2.2835 1.2097 9 6 7.6062 2.0148 -0.0743 10 7 6.7489 2.2703 -1.2389 11 6 7.5118 2.1565 -2.4891 12 6 6.6795 2.6737 -3.6342 13 8 5.6084 3.1995 -3.4163 14 7 7.1255 2.5522 -4.9001 15 6 6.3687 3.0231 -5.9418 16 1 5.4153 3.4919 -5.7478 17 6 6.8283 2.8973 -7.2470 18 7 6.1030 3.3492 -8.2454 19 14 8.4770 2.0858 -7.5825 20 1 8.2804 0.6264 -7.7745 21 1 9.0758 2.6703 -8.8094 22 1 9.3854 2.3156 -6.4305 23 6 5.5857 1.3740 -1.2487 24 7 3.6194 -0.6168 0.0062 25 7 2.2964 -1.0881 0.0005 26 1 2.0093 -2.0146 0.0006 27 1 -0.3634 0.0003 1.0276 28 1 -0.3633 0.8898 -0.5141 29 1 -0.3633 -0.8901 -0.5135 30 1 5.0006 1.5906 2.1398 31 1 5.9075 0.3301 1.2673 32 1 7.4498 2.0788 2.0740 33 1 6.4994 3.3257 1.2298 34 1 7.9363 0.9761 -0.0871 35 1 8.4748 2.6723 -0.1116 36 1 8.4270 2.7434 -2.4110 37 1 7.7644 1.1112 -2.6667 38 1 7.9820 2.1314 -5.0743 39 1 6.4241 3.2616 -9.1565 40 1 5.9253 0.3384 -1.2560 41 1 4.9869 1.5663 -2.1390 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330724345.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:36:07 Heat of formation + Delta-G solvation = 23.188516 kcal Electronic energy + Delta-G solvation = -23545.136435 eV Core-core repulsion = 20074.426933 eV Total energy + Delta-G solvation = -3470.709502 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.23404 -40.75006 -39.30428 -36.05368 -35.28288 -33.77226 -33.54885 -33.39381 -31.60188 -29.18307 -28.75792 -26.38500 -25.20218 -24.05686 -22.43721 -21.53110 -21.23708 -20.42598 -20.19005 -18.91261 -17.74216 -16.98703 -16.83630 -16.68091 -16.30770 -15.61024 -15.48723 -15.23395 -15.19687 -14.87507 -14.61871 -14.36534 -14.02441 -13.87022 -13.68912 -13.63496 -13.24382 -13.03298 -12.80538 -12.72126 -12.41556 -12.34312 -11.98194 -11.78351 -11.67553 -11.49629 -11.43848 -11.10872 -11.06742 -10.48158 -10.34370 -10.22254 -9.21014 -8.41142 -6.01751 0.53132 1.29451 1.34834 1.43919 1.69549 1.76814 1.97232 2.22885 2.58280 2.92954 3.15003 3.31135 3.52273 3.80366 3.86481 3.95390 4.13698 4.16488 4.29837 4.30303 4.40193 4.52737 4.62219 4.66896 4.67711 4.74330 4.80561 4.99613 5.01505 5.02424 5.09627 5.19330 5.23615 5.35251 5.46687 5.53935 5.90169 6.01202 6.19324 6.23381 6.60914 6.89287 7.06648 7.40661 7.99244 8.76892 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.015620 B = 0.004054 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.190349 B = 6905.741891 C = 8130.178725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.284 3.716 3 N -0.580 5.580 4 C 0.229 3.771 5 C 0.014 3.986 6 H 0.082 0.918 7 C -0.098 4.098 8 C -0.108 4.108 9 C 0.051 3.949 10 N -0.534 5.534 11 C 0.055 3.945 12 C 0.449 3.551 13 O -0.604 6.604 14 N -0.593 5.593 15 C -0.327 4.327 16 H 0.052 0.948 17 C -0.015 4.015 18 N -0.936 5.936 19 Si 0.965 3.035 20 H -0.259 1.259 21 H -0.273 1.273 22 H -0.229 1.229 23 C 0.082 3.918 24 N -0.334 5.334 25 N -0.476 5.476 26 H 0.456 0.544 27 H 0.115 0.885 28 H 0.093 0.907 29 H 0.113 0.887 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.103 0.897 33 H 0.067 0.933 34 H 0.046 0.954 35 H 0.098 0.902 36 H 0.129 0.871 37 H 0.074 0.926 38 H 0.389 0.611 39 H 0.279 0.721 40 H 0.035 0.965 41 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.213 -12.168 21.250 24.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.006 3.994 3 N -0.311 5.311 4 C -0.054 4.054 5 C -0.008 4.008 6 H 0.101 0.899 7 C -0.137 4.137 8 C -0.146 4.146 9 C -0.075 4.075 10 N -0.260 5.260 11 C -0.076 4.076 12 C 0.236 3.764 13 O -0.488 6.488 14 N -0.236 5.236 15 C -0.456 4.456 16 H 0.071 0.929 17 C -0.214 4.214 18 N -0.577 5.577 19 Si 0.785 3.215 20 H -0.184 1.184 21 H -0.198 1.198 22 H -0.153 1.153 23 C -0.047 4.047 24 N -0.164 5.164 25 N -0.196 5.196 26 H 0.305 0.695 27 H 0.134 0.866 28 H 0.112 0.888 29 H 0.131 0.869 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.122 0.878 33 H 0.086 0.914 34 H 0.064 0.936 35 H 0.116 0.884 36 H 0.147 0.853 37 H 0.092 0.908 38 H 0.225 0.775 39 H 0.088 0.912 40 H 0.053 0.947 41 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -0.573 -11.339 21.235 24.080 hybrid contribution 0.181 -1.463 -1.250 1.933 sum -0.392 -12.801 19.985 23.737 Atomic orbital electron populations 1.20649 0.79987 1.06350 1.06275 1.25297 0.98378 0.82046 0.93661 1.70385 1.02039 1.31701 1.26931 1.24265 0.93500 0.90373 0.97256 1.19486 0.88670 0.95975 0.96650 0.89929 1.21556 0.96460 1.00689 0.94977 1.21583 0.95847 0.99919 0.97223 1.22322 0.95677 1.00610 0.88923 1.61372 1.08406 1.54171 1.02001 1.21845 0.96485 1.01556 0.87674 1.20979 0.87990 0.83249 0.84147 1.90550 1.25546 1.48077 1.84633 1.42042 1.20431 1.55618 1.05486 1.18993 1.03109 1.37448 0.86093 0.92940 1.26115 1.03451 0.97815 0.93995 1.69816 1.40581 1.47145 1.00166 0.85364 0.77348 0.78948 0.79860 1.18376 1.19837 1.15256 1.21805 0.92435 0.93336 0.97148 1.77826 0.98484 1.12073 1.27985 1.47900 1.03346 1.10897 1.57455 0.69546 0.86629 0.88788 0.86857 0.91016 0.91344 0.87841 0.91424 0.93599 0.88412 0.85309 0.90769 0.77533 0.91175 0.94738 0.93827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.83 10.51 71.23 0.75 -0.08 16 2 C 0.28 6.59 8.24 138.22 1.14 7.73 16 3 N -0.58 -19.05 11.19 -179.72 -2.01 -21.06 16 4 C 0.23 7.64 6.65 138.63 0.92 8.56 16 5 C 0.01 0.45 2.82 -11.49 -0.03 0.41 16 6 H 0.08 3.03 8.14 -2.39 -0.02 3.01 16 7 C -0.10 -2.33 5.27 30.68 0.16 -2.16 16 8 C -0.11 -2.14 6.09 30.65 0.19 -1.96 16 9 C 0.05 1.14 5.46 86.33 0.47 1.61 16 10 N -0.53 -17.49 4.35 -900.91 -3.92 -21.41 16 11 C 0.06 1.83 5.45 85.56 0.47 2.30 16 12 C 0.45 21.48 7.31 87.66 0.64 22.12 16 13 O -0.60 -35.49 14.29 -3.06 -0.04 -35.53 16 14 N -0.59 -29.26 5.09 -306.98 -1.56 -30.82 16 15 C -0.33 -19.87 10.16 84.04 0.85 -19.01 16 16 H 0.05 3.80 7.39 -2.91 -0.02 3.78 16 17 C -0.02 -0.88 5.50 84.92 0.47 -0.42 16 18 N -0.94 -57.85 13.96 21.66 0.30 -57.55 16 19 Si 0.97 39.84 27.74 68.60 1.90 41.74 16 20 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 21 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 22 H -0.23 -7.95 6.52 99.48 0.65 -7.31 16 23 C 0.08 2.97 4.38 86.32 0.38 3.34 16 24 N -0.33 -10.08 12.80 -51.33 -0.66 -10.74 16 25 N -0.48 -10.39 7.45 -50.71 -0.38 -10.77 16 26 H 0.46 5.80 8.96 -213.10 -1.91 3.89 16 27 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 31 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.10 1.78 8.01 -2.39 -0.02 1.76 16 36 H 0.13 3.38 7.98 -2.39 -0.02 3.36 16 37 H 0.07 2.09 8.12 -2.39 -0.02 2.07 16 38 H 0.39 15.85 5.76 -92.71 -0.53 15.32 16 39 H 0.28 15.70 8.31 -92.71 -0.77 14.93 16 40 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.04 2.04 6.06 -2.39 -0.01 2.03 16 Total: -1.00 -88.77 337.42 -1.40 -90.17 By element: Atomic # 1 Polarization: 34.96 SS G_CDS: -1.44 Total: 33.52 kcal Atomic # 6 Polarization: 16.04 SS G_CDS: 6.40 Total: 22.44 kcal Atomic # 7 Polarization: -144.12 SS G_CDS: -8.22 Total: -152.34 kcal Atomic # 8 Polarization: -35.49 SS G_CDS: -0.04 Total: -35.53 kcal Atomic # 14 Polarization: 39.84 SS G_CDS: 1.90 Total: 41.74 kcal Total: -88.77 -1.40 -90.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330724345.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.354 kcal (2) G-P(sol) polarization free energy of solvation -88.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds