Wall clock time and date at job start Tue Mar 31 2020 03:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21281 * 120.00329 * 2 1 4 4 N 1.34778 * 120.00213 * 180.02562 * 2 1 3 5 5 C 1.47026 * 125.64722 * 0.02562 * 4 2 1 6 6 C 1.54321 * 107.27220 * 178.90453 * 5 4 2 7 7 C 1.55158 * 102.94288 * 337.81272 * 6 5 4 8 8 C 1.47432 * 125.65078 * 179.97438 * 4 2 1 9 9 H 1.09004 * 110.36404 * 85.32500 * 8 4 2 10 10 C 1.50699 * 110.36404 * 323.10988 * 8 4 2 11 11 O 1.21278 * 120.00552 * 330.95549 * 10 8 4 12 12 N 1.34779 * 119.99550 * 150.95447 * 10 8 4 13 13 C 1.46499 * 120.00078 * 5.20531 * 12 10 8 14 14 C 1.50701 * 109.46823 * 90.00030 * 13 12 10 15 15 H 1.08004 * 120.00086 * 0.02562 * 14 13 12 16 16 C 1.37879 * 120.00325 * 179.97438 * 14 13 12 17 17 N 1.31510 * 120.00274 * 180.02562 * 16 14 13 18 18 Si 1.86803 * 119.99636 * 359.97438 * 16 14 13 19 19 H 1.48507 * 109.46934 * 90.00055 * 18 16 14 20 20 H 1.48494 * 109.47309 * 209.99667 * 18 16 14 21 21 H 1.48500 * 109.47222 * 330.00332 * 18 16 14 22 22 C 1.46499 * 119.99709 * 185.20970 * 12 10 8 23 23 C 1.53003 * 109.47110 * 89.62255 * 22 12 10 24 24 C 1.47201 * 109.47103 * 176.05207 * 23 22 12 25 25 N 7.33142 * 137.20713 * 338.04145 * 2 1 3 26 26 H 1.08998 * 109.47163 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47080 * 299.99965 * 1 2 3 28 28 H 1.09004 * 109.47187 * 59.99932 * 1 2 3 29 29 H 1.08994 * 109.88120 * 298.32760 * 5 4 2 30 30 H 1.09002 * 109.87888 * 59.48937 * 5 4 2 31 31 H 1.08999 * 110.71583 * 96.17501 * 6 5 4 32 32 H 1.09001 * 110.71973 * 219.44259 * 6 5 4 33 33 H 1.09008 * 111.00228 * 277.42482 * 7 6 5 34 34 H 1.08995 * 111.03685 * 153.59223 * 7 6 5 35 35 H 1.08994 * 109.47233 * 209.99915 * 13 12 10 36 36 H 1.08996 * 109.47298 * 330.00811 * 13 12 10 37 37 H 0.97000 * 119.99772 * 180.02562 * 17 16 14 38 38 H 1.09005 * 109.46513 * 209.61826 * 22 12 10 39 39 H 1.08999 * 109.47047 * 329.61670 * 22 12 10 40 40 H 1.09004 * 109.46641 * 296.04502 * 23 22 12 41 41 H 1.08996 * 109.47451 * 56.05102 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.5747 -2.5066 -0.0017 6 6 2.7280 -3.5316 -0.0301 7 6 3.9080 -2.7107 -0.6143 8 6 3.6480 -1.3123 -0.0011 9 1 4.0341 -1.2670 1.0172 10 6 4.2808 -0.2393 -0.8492 11 8 3.6736 0.2271 -1.7898 12 7 5.5215 0.2021 -0.5624 13 6 6.2994 -0.4387 0.5009 14 6 7.1087 -1.5692 -0.0804 15 1 7.0499 -1.7882 -1.1364 16 6 7.9251 -2.3234 0.7355 17 7 8.6318 -3.3096 0.2281 18 14 8.0285 -1.9433 2.5615 19 1 6.9968 -2.7254 3.2891 20 1 9.3756 -2.3094 3.0679 21 1 7.7951 -0.4930 2.7793 22 6 6.0922 1.3227 -1.3138 23 6 5.7320 2.6380 -0.6202 24 6 6.3837 3.7567 -1.3208 25 7 6.8868 4.6193 -1.8624 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 0.9784 -2.6444 0.9003 30 1 0.9480 -2.6291 -0.8851 31 1 2.9606 -3.8783 0.9768 32 1 2.4823 -4.3707 -0.6809 33 1 3.8582 -2.6754 -1.7027 34 1 4.8657 -3.1113 -0.2819 35 1 6.9692 0.2930 0.9524 36 1 5.6228 -0.8296 1.2608 37 1 9.2059 -3.8404 0.8022 38 1 7.1765 1.2183 -1.3542 39 1 5.6893 1.3237 -2.3266 40 1 4.6510 2.7761 -0.6421 41 1 6.0738 2.6088 0.4144 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330786351.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:53 Heat of formation + Delta-G solvation = -34.964983 kcal Electronic energy + Delta-G solvation = -24616.868948 eV Core-core repulsion = 21111.344970 eV Total energy + Delta-G solvation = -3505.523978 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.40135 -38.54495 -37.01115 -36.48266 -35.18359 -32.85827 -31.93452 -31.32507 -29.77736 -28.49547 -27.82772 -24.55908 -23.10849 -22.59002 -21.22276 -19.79767 -17.96840 -17.50255 -17.20448 -16.84887 -16.70077 -15.48876 -15.47972 -14.83492 -14.55751 -14.48557 -14.24825 -13.88812 -13.38840 -13.18841 -12.99676 -12.89300 -12.63722 -12.50385 -12.40283 -12.28847 -12.14089 -11.90937 -11.77978 -11.53468 -11.30684 -11.06311 -11.02599 -10.79641 -10.60437 -10.52423 -10.33145 -9.70052 -9.57063 -9.21402 -8.80380 -8.35262 -7.85443 -6.28637 -4.30628 2.79721 2.92458 3.00393 3.06976 3.11256 3.20674 3.23100 3.41863 3.72748 4.19972 4.39365 4.61685 4.71361 4.98361 5.01715 5.05383 5.17473 5.24686 5.38692 5.40413 5.42928 5.45280 5.48301 5.72005 5.76555 5.78883 5.90879 5.98213 6.13629 6.25435 6.30882 6.35065 6.43763 6.56402 6.64503 7.23306 7.36252 7.70778 7.76324 8.04220 8.32950 8.41415 8.76725 8.90916 9.30494 10.83371 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.009828 B = 0.007891 C = 0.004943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2848.378665 B = 3547.505614 C = 5663.021475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.527 3.473 3 O -0.530 6.530 4 N -0.609 5.609 5 C 0.103 3.897 6 C -0.132 4.132 7 C -0.117 4.117 8 C 0.120 3.880 9 H 0.099 0.901 10 C 0.531 3.469 11 O -0.545 6.545 12 N -0.591 5.591 13 C 0.205 3.795 14 C -0.541 4.541 15 H 0.081 0.919 16 C 0.079 3.921 17 N -0.888 5.888 18 Si 0.866 3.134 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.263 1.263 22 C 0.130 3.870 23 C -0.047 4.047 24 C 0.223 3.777 25 N -0.452 5.452 26 H 0.073 0.927 27 H 0.090 0.910 28 H 0.091 0.909 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.115 0.885 35 H 0.036 0.964 36 H 0.031 0.969 37 H 0.267 0.733 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.114 0.886 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.113 -1.090 3.793 14.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.316 3.684 3 O -0.405 6.405 4 N -0.345 5.345 5 C -0.020 4.020 6 C -0.169 4.169 7 C -0.155 4.155 8 C 0.014 3.986 9 H 0.116 0.884 10 C 0.318 3.682 11 O -0.422 6.422 12 N -0.322 5.322 13 C 0.084 3.916 14 C -0.579 4.579 15 H 0.099 0.901 16 C -0.125 4.125 17 N -0.525 5.525 18 Si 0.692 3.308 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.188 1.188 22 C 0.005 3.995 23 C -0.089 4.089 24 C -0.095 4.095 25 N -0.130 5.130 26 H 0.092 0.908 27 H 0.108 0.892 28 H 0.110 0.890 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.098 0.902 32 H 0.102 0.898 33 H 0.094 0.906 34 H 0.133 0.867 35 H 0.054 0.946 36 H 0.049 0.951 37 H 0.077 0.923 38 H 0.107 0.893 39 H 0.102 0.898 40 H 0.132 0.868 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -13.272 0.951 2.544 13.547 hybrid contribution 0.060 -0.423 1.329 1.396 sum -13.211 0.528 3.872 13.777 Atomic orbital electron populations 1.21830 0.91939 1.03900 1.04819 1.20333 0.90030 0.82270 0.75804 1.90710 1.70251 1.30519 1.49049 1.48488 1.06034 1.05935 1.74054 1.22031 0.96555 0.82084 1.01306 1.22658 0.94447 0.97384 1.02456 1.22770 1.00522 0.91270 1.00944 1.21902 0.80605 0.95695 1.00383 0.88375 1.20085 0.81186 0.82310 0.84593 1.90609 1.62747 1.58802 1.30073 1.47720 1.14976 1.32132 1.37329 1.19917 0.91465 0.94068 0.86184 1.21363 1.25322 1.13581 0.97632 0.90092 1.24848 0.94777 0.94588 0.98288 1.69881 1.27267 1.19351 1.35977 0.87012 0.78200 0.79606 0.85976 1.19808 1.20895 1.18768 1.21068 0.99692 0.82966 0.95775 1.19801 1.01509 0.88220 0.99320 1.29131 0.92984 0.94071 0.93323 1.81164 1.10254 1.11642 1.09893 0.90799 0.89156 0.88986 0.91363 0.91465 0.90216 0.89802 0.90554 0.86673 0.94593 0.95137 0.92300 0.89333 0.89833 0.86809 0.87385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.67 10.21 36.00 0.37 -1.31 16 2 C 0.53 8.20 7.28 -10.99 -0.08 8.12 16 3 O -0.53 -10.44 14.97 -16.18 -0.24 -10.68 16 4 N -0.61 -8.95 3.12 -164.35 -0.51 -9.47 16 5 C 0.10 1.07 5.81 -3.06 -0.02 1.06 16 6 C -0.13 -1.43 6.95 -24.90 -0.17 -1.60 16 7 C -0.12 -1.78 6.49 -24.59 -0.16 -1.94 16 8 C 0.12 2.03 2.91 -67.57 -0.20 1.83 16 9 H 0.10 1.66 5.96 -51.93 -0.31 1.35 16 10 C 0.53 10.47 5.57 -10.99 -0.06 10.41 16 11 O -0.54 -12.02 14.44 -16.18 -0.23 -12.26 16 12 N -0.59 -11.30 2.46 -175.06 -0.43 -11.73 16 13 C 0.20 4.12 4.12 -5.19 -0.02 4.09 16 14 C -0.54 -12.88 9.20 -34.44 -0.32 -13.20 16 15 H 0.08 2.18 8.06 -52.48 -0.42 1.76 16 16 C 0.08 1.96 5.47 -17.82 -0.10 1.87 16 17 N -0.89 -24.04 13.96 55.43 0.77 -23.26 16 18 Si 0.87 18.40 27.47 -169.99 -4.67 13.73 16 19 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 20 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 21 H -0.26 -5.31 6.54 56.52 0.37 -4.94 16 22 C 0.13 2.23 5.40 -4.04 -0.02 2.21 16 23 C -0.05 -0.69 6.03 -29.52 -0.18 -0.87 16 24 C 0.22 3.50 15.43 -20.76 -0.32 3.18 16 25 N -0.45 -8.02 18.54 42.16 0.78 -7.24 16 26 H 0.07 0.56 6.60 -51.93 -0.34 0.22 16 27 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 30 H 0.07 0.62 8.02 -51.93 -0.42 0.20 16 31 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.08 1.24 8.05 -51.92 -0.42 0.82 16 34 H 0.11 2.00 7.38 -51.93 -0.38 1.61 16 35 H 0.04 0.71 7.13 -51.93 -0.37 0.34 16 36 H 0.03 0.59 5.15 -51.93 -0.27 0.33 16 37 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 38 H 0.09 1.49 8.07 -51.93 -0.42 1.07 16 39 H 0.08 1.49 7.37 -51.93 -0.38 1.11 16 40 H 0.11 1.76 8.14 -51.93 -0.42 1.34 16 41 H 0.11 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 343.61 15.07 5.18 5.18 Total: -1.00 -32.04 343.61 -6.49 -38.53 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -5.86 Total: 3.36 kcal Atomic # 6 Polarization: 15.12 SS G_CDS: -1.28 Total: 13.85 kcal Atomic # 7 Polarization: -52.31 SS G_CDS: 0.61 Total: -51.70 kcal Atomic # 8 Polarization: -22.46 SS G_CDS: -0.48 Total: -22.94 kcal Atomic # 14 Polarization: 18.40 SS G_CDS: -4.67 Total: 13.73 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.04 -6.49 -38.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330786351.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.561 kcal (2) G-P(sol) polarization free energy of solvation -32.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds