Wall clock time and date at job start Tue Mar 31 2020 03:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21281 * 120.00329 * 2 1 4 4 N 1.34778 * 120.00213 * 180.02562 * 2 1 3 5 5 C 1.47026 * 125.64722 * 0.02562 * 4 2 1 6 6 C 1.54321 * 107.27220 * 178.90453 * 5 4 2 7 7 C 1.55158 * 102.94288 * 337.81272 * 6 5 4 8 8 C 1.47432 * 125.65078 * 179.97438 * 4 2 1 9 9 H 1.09004 * 110.36404 * 85.32500 * 8 4 2 10 10 C 1.50699 * 110.36404 * 323.10988 * 8 4 2 11 11 O 1.21278 * 120.00552 * 330.95549 * 10 8 4 12 12 N 1.34779 * 119.99550 * 150.95447 * 10 8 4 13 13 C 1.46499 * 120.00078 * 5.20531 * 12 10 8 14 14 C 1.50701 * 109.46823 * 90.00030 * 13 12 10 15 15 H 1.08004 * 120.00086 * 0.02562 * 14 13 12 16 16 C 1.37879 * 120.00325 * 179.97438 * 14 13 12 17 17 N 1.31510 * 120.00274 * 180.02562 * 16 14 13 18 18 Si 1.86803 * 119.99636 * 359.97438 * 16 14 13 19 19 H 1.48507 * 109.46934 * 90.00055 * 18 16 14 20 20 H 1.48494 * 109.47309 * 209.99667 * 18 16 14 21 21 H 1.48500 * 109.47222 * 330.00332 * 18 16 14 22 22 C 1.46499 * 119.99709 * 185.20970 * 12 10 8 23 23 C 1.53003 * 109.47110 * 89.62255 * 22 12 10 24 24 C 1.47201 * 109.47103 * 176.05207 * 23 22 12 25 25 N 7.33142 * 137.20713 * 338.04145 * 2 1 3 26 26 H 1.08998 * 109.47163 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47080 * 299.99965 * 1 2 3 28 28 H 1.09004 * 109.47187 * 59.99932 * 1 2 3 29 29 H 1.08994 * 109.88120 * 298.32760 * 5 4 2 30 30 H 1.09002 * 109.87888 * 59.48937 * 5 4 2 31 31 H 1.08999 * 110.71583 * 96.17501 * 6 5 4 32 32 H 1.09001 * 110.71973 * 219.44259 * 6 5 4 33 33 H 1.09008 * 111.00228 * 277.42482 * 7 6 5 34 34 H 1.08995 * 111.03685 * 153.59223 * 7 6 5 35 35 H 1.08994 * 109.47233 * 209.99915 * 13 12 10 36 36 H 1.08996 * 109.47298 * 330.00811 * 13 12 10 37 37 H 0.97000 * 119.99772 * 180.02562 * 17 16 14 38 38 H 1.09005 * 109.46513 * 209.61826 * 22 12 10 39 39 H 1.08999 * 109.47047 * 329.61670 * 22 12 10 40 40 H 1.09004 * 109.46641 * 296.04502 * 23 22 12 41 41 H 1.08996 * 109.47451 * 56.05102 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.5747 -2.5066 -0.0017 6 6 2.7280 -3.5316 -0.0301 7 6 3.9080 -2.7107 -0.6143 8 6 3.6480 -1.3123 -0.0011 9 1 4.0341 -1.2670 1.0172 10 6 4.2808 -0.2393 -0.8492 11 8 3.6736 0.2271 -1.7898 12 7 5.5215 0.2021 -0.5624 13 6 6.2994 -0.4387 0.5009 14 6 7.1087 -1.5692 -0.0804 15 1 7.0499 -1.7882 -1.1364 16 6 7.9251 -2.3234 0.7355 17 7 8.6318 -3.3096 0.2281 18 14 8.0285 -1.9433 2.5615 19 1 6.9968 -2.7254 3.2891 20 1 9.3756 -2.3094 3.0679 21 1 7.7951 -0.4930 2.7793 22 6 6.0922 1.3227 -1.3138 23 6 5.7320 2.6380 -0.6202 24 6 6.3837 3.7567 -1.3208 25 7 6.8868 4.6193 -1.8624 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 0.9784 -2.6444 0.9003 30 1 0.9480 -2.6291 -0.8851 31 1 2.9606 -3.8783 0.9768 32 1 2.4823 -4.3707 -0.6809 33 1 3.8582 -2.6754 -1.7027 34 1 4.8657 -3.1113 -0.2819 35 1 6.9692 0.2930 0.9524 36 1 5.6228 -0.8296 1.2608 37 1 9.2059 -3.8404 0.8022 38 1 7.1765 1.2183 -1.3542 39 1 5.6893 1.3237 -2.3266 40 1 4.6510 2.7761 -0.6421 41 1 6.0738 2.6088 0.4144 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330786351.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:52 Heat of formation + Delta-G solvation = -54.821953 kcal Electronic energy + Delta-G solvation = -24617.730011 eV Core-core repulsion = 21111.344970 eV Total energy + Delta-G solvation = -3506.385041 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 2.62 seconds Orbital eigenvalues (eV) -41.69655 -39.90830 -38.21564 -37.83134 -36.78083 -34.65432 -33.20481 -32.64833 -30.81917 -29.63649 -29.43863 -25.85144 -24.57096 -24.07228 -22.34190 -21.00717 -19.35044 -19.06504 -18.64707 -18.41479 -17.91477 -16.83760 -16.68044 -16.24867 -15.98653 -15.84601 -15.41246 -15.32679 -14.70520 -14.61694 -14.27870 -14.15824 -14.04658 -13.80297 -13.61168 -13.47250 -13.26649 -13.24657 -13.02875 -12.82014 -12.72853 -12.53629 -12.36805 -12.04645 -12.02475 -11.88307 -11.66192 -11.57324 -10.78042 -10.76344 -10.63705 -9.53442 -9.46577 -8.21635 -6.28009 1.45129 1.47903 1.51447 1.56847 1.70184 1.74296 1.79653 2.06514 2.37107 2.40986 3.08125 3.12912 3.49452 3.71788 3.81136 4.02163 4.06455 4.07591 4.14524 4.27942 4.46751 4.48518 4.58703 4.69748 4.73177 4.78695 4.80959 4.86540 4.94902 5.00186 5.07135 5.09157 5.21361 5.29118 5.39425 5.50055 5.69117 6.25168 6.46494 6.59708 6.66668 6.78314 7.24769 7.34323 7.43042 8.93858 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.009828 B = 0.007891 C = 0.004943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2848.378665 B = 3547.505614 C = 5663.021475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.511 3.489 3 O -0.582 6.582 4 N -0.611 5.611 5 C 0.099 3.901 6 C -0.121 4.121 7 C -0.116 4.116 8 C 0.116 3.884 9 H 0.099 0.901 10 C 0.524 3.476 11 O -0.574 6.574 12 N -0.595 5.595 13 C 0.212 3.788 14 C -0.531 4.531 15 H 0.034 0.966 16 C 0.027 3.973 17 N -0.939 5.939 18 Si 0.928 3.072 19 H -0.257 1.257 20 H -0.293 1.293 21 H -0.239 1.239 22 C 0.127 3.873 23 C -0.028 4.028 24 C 0.244 3.756 25 N -0.484 5.484 26 H 0.105 0.895 27 H 0.107 0.893 28 H 0.093 0.907 29 H 0.105 0.895 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.106 0.894 33 H 0.056 0.944 34 H 0.087 0.913 35 H 0.052 0.948 36 H 0.048 0.952 37 H 0.267 0.733 38 H 0.089 0.911 39 H 0.068 0.932 40 H 0.110 0.890 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.394 -1.340 6.147 17.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.302 3.698 3 O -0.462 6.462 4 N -0.346 5.346 5 C -0.022 4.022 6 C -0.158 4.158 7 C -0.154 4.154 8 C 0.009 3.991 9 H 0.116 0.884 10 C 0.312 3.688 11 O -0.454 6.454 12 N -0.326 5.326 13 C 0.090 3.910 14 C -0.569 4.569 15 H 0.053 0.947 16 C -0.172 4.172 17 N -0.579 5.579 18 Si 0.751 3.249 19 H -0.182 1.182 20 H -0.219 1.219 21 H -0.162 1.162 22 C 0.002 3.998 23 C -0.069 4.069 24 C -0.073 4.073 25 N -0.162 5.162 26 H 0.123 0.877 27 H 0.125 0.875 28 H 0.112 0.888 29 H 0.123 0.877 30 H 0.104 0.896 31 H 0.111 0.889 32 H 0.124 0.876 33 H 0.075 0.925 34 H 0.106 0.894 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.076 0.924 38 H 0.107 0.893 39 H 0.087 0.913 40 H 0.128 0.872 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -15.588 0.687 4.897 16.353 hybrid contribution 0.779 -0.397 0.464 0.990 sum -14.808 0.290 5.361 15.752 Atomic orbital electron populations 1.21844 0.87516 1.06277 1.05675 1.21410 0.92160 0.81607 0.74596 1.90674 1.71676 1.32370 1.51440 1.48702 1.04971 1.07624 1.73351 1.22356 0.96471 0.79391 1.04009 1.22694 0.92291 0.97573 1.03257 1.22629 1.01384 0.91610 0.99822 1.21873 0.82492 0.95115 0.99606 0.88384 1.20686 0.81099 0.82482 0.84523 1.90577 1.63444 1.59906 1.31468 1.47785 1.14986 1.32498 1.37284 1.19798 0.91555 0.93133 0.86475 1.21406 1.25435 1.14535 0.95539 0.94717 1.25632 0.94294 0.94187 1.03110 1.70039 1.28829 1.21109 1.37889 0.86011 0.77966 0.80947 0.80005 1.18165 1.21900 1.16195 1.21106 0.99537 0.83834 0.95352 1.19644 1.01057 0.86185 1.00042 1.29162 0.92079 0.93596 0.92439 1.81188 1.11404 1.12746 1.10888 0.87667 0.87484 0.88792 0.87711 0.89647 0.88920 0.87587 0.92477 0.89439 0.93005 0.93464 0.92423 0.89260 0.91309 0.87240 0.84856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 10.21 71.23 0.73 -1.89 16 2 C 0.51 15.05 7.28 87.65 0.64 15.69 16 3 O -0.58 -22.75 14.97 17.75 0.27 -22.49 16 4 N -0.61 -16.76 3.12 -792.29 -2.47 -19.23 16 5 C 0.10 1.68 5.81 86.73 0.50 2.19 16 6 C -0.12 -2.29 6.95 31.78 0.22 -2.07 16 7 C -0.12 -3.54 6.49 31.98 0.21 -3.33 16 8 C 0.12 3.85 2.91 44.71 0.13 3.98 16 9 H 0.10 3.21 5.96 -2.39 -0.01 3.19 16 10 C 0.52 20.93 5.57 87.66 0.49 21.42 16 11 O -0.57 -26.00 14.44 17.76 0.26 -25.74 16 12 N -0.59 -22.92 2.46 -826.16 -2.03 -24.95 16 13 C 0.21 8.34 4.12 85.63 0.35 8.69 16 14 C -0.53 -25.82 9.20 25.60 0.24 -25.58 16 15 H 0.03 1.97 8.06 -2.91 -0.02 1.95 16 16 C 0.03 1.36 5.47 84.66 0.46 1.82 16 17 N -0.94 -52.34 13.96 21.45 0.30 -52.05 16 18 Si 0.93 36.83 27.47 68.60 1.88 38.71 16 19 H -0.26 -9.56 7.11 99.48 0.71 -8.85 16 20 H -0.29 -12.07 7.11 99.48 0.71 -11.37 16 21 H -0.24 -8.49 6.54 99.48 0.65 -7.84 16 22 C 0.13 4.38 5.40 86.38 0.47 4.85 16 23 C -0.03 -0.80 6.03 28.79 0.17 -0.62 16 24 C 0.24 7.51 15.43 89.44 1.38 8.89 16 25 N -0.48 -17.00 18.54 20.01 0.37 -16.63 16 26 H 0.10 1.09 6.60 -2.39 -0.02 1.07 16 27 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.10 1.11 8.09 -2.39 -0.02 1.09 16 30 H 0.09 1.19 8.02 -2.39 -0.02 1.17 16 31 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.06 1.92 8.05 -2.38 -0.02 1.90 16 34 H 0.09 3.15 7.38 -2.39 -0.02 3.13 16 35 H 0.05 1.91 7.13 -2.39 -0.02 1.89 16 36 H 0.05 1.74 5.15 -2.39 -0.01 1.73 16 37 H 0.27 14.02 8.31 -92.71 -0.77 13.25 16 38 H 0.09 3.03 8.07 -2.38 -0.02 3.01 16 39 H 0.07 2.57 7.37 -2.39 -0.02 2.55 16 40 H 0.11 3.33 8.14 -2.38 -0.02 3.32 16 41 H 0.13 3.17 8.14 -2.39 -0.02 3.15 16 Total: -1.00 -73.41 343.61 5.55 -67.87 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: 0.98 Total: 20.47 kcal Atomic # 6 Polarization: 28.04 SS G_CDS: 5.99 Total: 34.03 kcal Atomic # 7 Polarization: -109.02 SS G_CDS: -3.83 Total: -112.85 kcal Atomic # 8 Polarization: -48.75 SS G_CDS: 0.52 Total: -48.23 kcal Atomic # 14 Polarization: 36.83 SS G_CDS: 1.88 Total: 38.71 kcal Total: -73.41 5.55 -67.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330786351.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.047 kcal (2) G-P(sol) polarization free energy of solvation -73.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.62 seconds